Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18275

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18270 and LRK53_RS18275 are separated by 888 nucleotidesLRK53_RS18275 and LRK53_RS18280 are separated by 32 nucleotides LRK53_RS18270: LRK53_RS18270 - ATP-binding domain-containing protein, at 31,564 to 31,725 _RS18270 LRK53_RS18275: LRK53_RS18275 - UvrD-helicase domain-containing protein, at 32,614 to 33,210 _RS18275 LRK53_RS18280: LRK53_RS18280 - hypothetical protein, at 33,243 to 33,995 _RS18280 Position (kb) 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1at 31.901 kb on + strandat 31.901 kb on + strandat 31.901 kb on + strandat 31.902 kb on - strandat 31.902 kb on - strandat 31.902 kb on - strandat 31.902 kb on - strandat 32.060 kb on + strandat 32.168 kb on + strandat 32.168 kb on + strandat 32.168 kb on + strandat 32.168 kb on + strandat 32.168 kb on + strandat 32.168 kb on + strandat 32.169 kb on - strandat 32.169 kb on - strandat 32.169 kb on - strandat 32.169 kb on - strandat 32.169 kb on - strandat 32.169 kb on - strandat 32.477 kb on + strandat 32.477 kb on + strandat 32.477 kb on + strandat 32.477 kb on + strandat 32.541 kb on - strandat 32.564 kb on + strandat 32.564 kb on + strandat 32.565 kb on - strandat 32.565 kb on - strandat 32.678 kb on + strand, within LRK53_RS18275at 32.678 kb on + strand, within LRK53_RS18275at 32.678 kb on + strand, within LRK53_RS18275at 32.678 kb on + strand, within LRK53_RS18275at 32.678 kb on + strand, within LRK53_RS18275at 32.678 kb on + strand, within LRK53_RS18275at 32.678 kb on + strand, within LRK53_RS18275at 32.679 kb on - strand, within LRK53_RS18275at 32.679 kb on - strand, within LRK53_RS18275at 32.679 kb on - strand, within LRK53_RS18275at 32.679 kb on - strand, within LRK53_RS18275at 32.691 kb on - strand, within LRK53_RS18275at 32.793 kb on - strand, within LRK53_RS18275at 32.793 kb on - strand, within LRK53_RS18275at 32.905 kb on + strand, within LRK53_RS18275at 32.905 kb on + strand, within LRK53_RS18275at 32.905 kb on + strand, within LRK53_RS18275at 32.906 kb on - strand, within LRK53_RS18275at 32.906 kb on - strand, within LRK53_RS18275at 32.906 kb on - strand, within LRK53_RS18275at 33.416 kb on - strand, within LRK53_RS18280at 33.416 kb on - strand, within LRK53_RS18280at 33.416 kb on - strand, within LRK53_RS18280at 33.416 kb on - strand, within LRK53_RS18280at 33.416 kb on - strand, within LRK53_RS18280at 33.416 kb on - strand, within LRK53_RS18280at 33.416 kb on - strand, within LRK53_RS18280at 33.535 kb on + strand, within LRK53_RS18280at 33.536 kb on - strand, within LRK53_RS18280at 33.536 kb on - strand, within LRK53_RS18280at 33.575 kb on + strand, within LRK53_RS18280at 33.576 kb on - strand, within LRK53_RS18280at 33.576 kb on - strand, within LRK53_RS18280at 33.576 kb on - strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.577 kb on + strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.578 kb on - strand, within LRK53_RS18280at 33.760 kb on + strand, within LRK53_RS18280at 33.769 kb on + strand, within LRK53_RS18280at 33.769 kb on + strand, within LRK53_RS18280at 33.805 kb on + strand, within LRK53_RS18280at 33.806 kb on - strand, within LRK53_RS18280at 33.806 kb on - strand, within LRK53_RS18280at 33.806 kb on - strand, within LRK53_RS18280at 33.811 kb on + strand, within LRK53_RS18280at 33.811 kb on + strand, within LRK53_RS18280at 33.811 kb on + strand, within LRK53_RS18280at 33.812 kb on - strand, within LRK53_RS18280at 33.812 kb on - strand, within LRK53_RS18280at 33.812 kb on - strand, within LRK53_RS18280at 33.812 kb on - strand, within LRK53_RS18280at 33.845 kb on - strand, within LRK53_RS18280at 33.845 kb on - strand, within LRK53_RS18280at 33.845 kb on - strand, within LRK53_RS18280at 33.845 kb on - strand, within LRK53_RS18280at 33.845 kb on - strand, within LRK53_RS18280at 34.017 kb on - strandat 34.068 kb on + strandat 34.149 kb on - strandat 34.194 kb on + strandat 34.194 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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31,901 + -2.6
31,901 + -0.2
31,901 + +0.5
31,902 - -2.3
31,902 - -0.5
31,902 - -0.2
31,902 - -0.5
32,060 + -0.9
32,168 + -1.3
32,168 + +0.5
32,168 + +0.1
32,168 + -1.7
32,168 + -0.5
32,168 + -1.5
32,169 - +1.1
32,169 - -0.7
32,169 - +1.1
32,169 - -0.7
32,169 - -0.3
32,169 - -0.8
32,477 + -0.2
32,477 + -1.8
32,477 + -1.1
32,477 + -2.3
32,541 - -1.8
32,564 + -2.3
32,564 + +1.1
32,565 - -0.1
32,565 - -1.2
32,678 + LRK53_RS18275 0.11 -0.5
32,678 + LRK53_RS18275 0.11 +1.1
32,678 + LRK53_RS18275 0.11 +0.5
32,678 + LRK53_RS18275 0.11 -0.2
32,678 + LRK53_RS18275 0.11 -0.2
32,678 + LRK53_RS18275 0.11 -2.1
32,678 + LRK53_RS18275 0.11 -1.5
32,679 - LRK53_RS18275 0.11 -0.6
32,679 - LRK53_RS18275 0.11 -0.6
32,679 - LRK53_RS18275 0.11 -0.7
32,679 - LRK53_RS18275 0.11 -0.5
32,691 - LRK53_RS18275 0.13 -0.8
32,793 - LRK53_RS18275 0.30 +0.5
32,793 - LRK53_RS18275 0.30 -1.3
32,905 + LRK53_RS18275 0.49 -1.5
32,905 + LRK53_RS18275 0.49 +1.1
32,905 + LRK53_RS18275 0.49 -0.3
32,906 - LRK53_RS18275 0.49 -0.9
32,906 - LRK53_RS18275 0.49 +0.6
32,906 - LRK53_RS18275 0.49 -0.3
33,416 - LRK53_RS18280 0.23 -1.5
33,416 - LRK53_RS18280 0.23 -1.1
33,416 - LRK53_RS18280 0.23 -0.6
33,416 - LRK53_RS18280 0.23 -0.9
33,416 - LRK53_RS18280 0.23 -1.9
33,416 - LRK53_RS18280 0.23 +0.3
33,416 - LRK53_RS18280 0.23 +0.3
33,535 + LRK53_RS18280 0.39 -0.1
33,536 - LRK53_RS18280 0.39 +0.3
33,536 - LRK53_RS18280 0.39 -1.7
33,575 + LRK53_RS18280 0.44 -1.3
33,576 - LRK53_RS18280 0.44 -0.2
33,576 - LRK53_RS18280 0.44 -0.9
33,576 - LRK53_RS18280 0.44 -1.0
33,577 + LRK53_RS18280 0.44 +1.6
33,577 + LRK53_RS18280 0.44 -1.5
33,577 + LRK53_RS18280 0.44 -0.7
33,577 + LRK53_RS18280 0.44 -1.5
33,577 + LRK53_RS18280 0.44 -1.5
33,577 + LRK53_RS18280 0.44 -1.7
33,577 + LRK53_RS18280 0.44 +1.1
33,577 + LRK53_RS18280 0.44 +1.6
33,577 + LRK53_RS18280 0.44 -0.7
33,577 + LRK53_RS18280 0.44 -0.9
33,577 + LRK53_RS18280 0.44 -2.4
33,577 + LRK53_RS18280 0.44 -0.9
33,577 + LRK53_RS18280 0.44 +0.3
33,577 + LRK53_RS18280 0.44 -1.8
33,577 + LRK53_RS18280 0.44 -0.4
33,577 + LRK53_RS18280 0.44 -1.7
33,577 + LRK53_RS18280 0.44 -0.6
33,578 - LRK53_RS18280 0.44 -0.9
33,578 - LRK53_RS18280 0.44 -0.5
33,578 - LRK53_RS18280 0.44 -2.9
33,578 - LRK53_RS18280 0.44 +0.1
33,578 - LRK53_RS18280 0.44 -0.5
33,578 - LRK53_RS18280 0.44 -0.4
33,578 - LRK53_RS18280 0.44 +1.7
33,578 - LRK53_RS18280 0.44 -2.1
33,578 - LRK53_RS18280 0.44 -0.5
33,578 - LRK53_RS18280 0.44 +0.5
33,578 - LRK53_RS18280 0.44 -0.5
33,578 - LRK53_RS18280 0.44 -0.5
33,578 - LRK53_RS18280 0.44 +0.1
33,578 - LRK53_RS18280 0.44 -1.3
33,578 - LRK53_RS18280 0.44 +1.1
33,578 - LRK53_RS18280 0.44 +0.1
33,760 + LRK53_RS18280 0.69 -0.4
33,769 + LRK53_RS18280 0.70 -0.2
33,769 + LRK53_RS18280 0.70 -1.9
33,805 + LRK53_RS18280 0.75 +0.1
33,806 - LRK53_RS18280 0.75 -1.9
33,806 - LRK53_RS18280 0.75 -0.5
33,806 - LRK53_RS18280 0.75 -1.7
33,811 + LRK53_RS18280 0.75 -1.9
33,811 + LRK53_RS18280 0.75 -1.6
33,811 + LRK53_RS18280 0.75 -0.3
33,812 - LRK53_RS18280 0.76 -0.9
33,812 - LRK53_RS18280 0.76 -0.9
33,812 - LRK53_RS18280 0.76 +1.1
33,812 - LRK53_RS18280 0.76 -1.3
33,845 - LRK53_RS18280 0.80 +0.7
33,845 - LRK53_RS18280 0.80 +0.1
33,845 - LRK53_RS18280 0.80 +0.2
33,845 - LRK53_RS18280 0.80 -1.2
33,845 - LRK53_RS18280 0.80 -1.5
34,017 - -1.7
34,068 + -1.3
34,149 - +0.4
34,194 + -0.3
34,194 + -1.3

Or see this region's nucleotide sequence