Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09165

Experiment: R2A_PIPES with Cobalt chloride 512 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS09160 and LRK53_RS09165 are separated by 292 nucleotidesLRK53_RS09165 and LRK53_RS09170 overlap by 4 nucleotides LRK53_RS09160: LRK53_RS09160 - 2-oxoglutarate dehydrogenase E1 component, at 2,047,926 to 2,050,766 _RS09160 LRK53_RS09165: LRK53_RS09165 - GNAT family N-acetyltransferase, at 2,051,059 to 2,052,009 _RS09165 LRK53_RS09170: LRK53_RS09170 - cupin domain-containing protein, at 2,052,006 to 2,053,199 _RS09170 Position (kb) 2051 2052 2053Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2050.892 kb on - strandat 2050.892 kb on - strandat 2050.892 kb on - strandat 2050.892 kb on - strandat 2050.951 kb on + strandat 2050.952 kb on - strandat 2050.968 kb on + strandat 2050.968 kb on + strandat 2050.968 kb on + strandat 2050.968 kb on + strandat 2050.969 kb on - strandat 2050.969 kb on - strandat 2050.969 kb on - strandat 2051.202 kb on - strand, within LRK53_RS09165at 2051.202 kb on - strand, within LRK53_RS09165at 2051.355 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.423 kb on + strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.424 kb on - strand, within LRK53_RS09165at 2051.599 kb on + strand, within LRK53_RS09165at 2051.599 kb on + strand, within LRK53_RS09165at 2051.599 kb on + strand, within LRK53_RS09165at 2051.599 kb on + strand, within LRK53_RS09165at 2051.600 kb on - strand, within LRK53_RS09165at 2051.600 kb on - strand, within LRK53_RS09165at 2051.600 kb on - strand, within LRK53_RS09165at 2051.600 kb on - strand, within LRK53_RS09165at 2051.600 kb on - strand, within LRK53_RS09165at 2051.600 kb on - strand, within LRK53_RS09165at 2051.600 kb on - strand, within LRK53_RS09165at 2051.600 kb on - strand, within LRK53_RS09165at 2051.600 kb on - strand, within LRK53_RS09165at 2051.654 kb on + strand, within LRK53_RS09165at 2052.170 kb on - strand, within LRK53_RS09170at 2052.604 kb on + strand, within LRK53_RS09170at 2052.605 kb on - strand, within LRK53_RS09170at 2052.605 kb on - strand, within LRK53_RS09170at 2052.605 kb on - strand, within LRK53_RS09170at 2052.760 kb on + strand, within LRK53_RS09170at 2052.761 kb on - strand, within LRK53_RS09170at 2052.802 kb on + strand, within LRK53_RS09170at 2052.850 kb on + strand, within LRK53_RS09170at 2052.850 kb on + strand, within LRK53_RS09170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
remove
2,050,892 - +0.3
2,050,892 - -0.6
2,050,892 - -0.7
2,050,892 - +0.3
2,050,951 + -0.5
2,050,952 - -1.0
2,050,968 + +0.9
2,050,968 + -0.6
2,050,968 + -0.4
2,050,968 + -0.4
2,050,969 - -0.1
2,050,969 - -0.2
2,050,969 - -0.7
2,051,202 - LRK53_RS09165 0.15 -1.4
2,051,202 - LRK53_RS09165 0.15 -0.1
2,051,355 + LRK53_RS09165 0.31 -0.4
2,051,423 + LRK53_RS09165 0.38 -0.1
2,051,423 + LRK53_RS09165 0.38 -1.7
2,051,423 + LRK53_RS09165 0.38 -1.1
2,051,423 + LRK53_RS09165 0.38 -0.3
2,051,423 + LRK53_RS09165 0.38 -0.1
2,051,423 + LRK53_RS09165 0.38 -1.9
2,051,423 + LRK53_RS09165 0.38 +0.6
2,051,423 + LRK53_RS09165 0.38 -2.3
2,051,423 + LRK53_RS09165 0.38 -0.6
2,051,423 + LRK53_RS09165 0.38 -0.7
2,051,423 + LRK53_RS09165 0.38 -1.7
2,051,423 + LRK53_RS09165 0.38 -1.1
2,051,423 + LRK53_RS09165 0.38 -0.7
2,051,423 + LRK53_RS09165 0.38 +0.2
2,051,423 + LRK53_RS09165 0.38 -0.5
2,051,423 + LRK53_RS09165 0.38 +1.5
2,051,423 + LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 -1.7
2,051,424 - LRK53_RS09165 0.38 +0.6
2,051,424 - LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 -1.7
2,051,424 - LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 +1.5
2,051,424 - LRK53_RS09165 0.38 +0.0
2,051,424 - LRK53_RS09165 0.38 -1.3
2,051,424 - LRK53_RS09165 0.38 +0.9
2,051,424 - LRK53_RS09165 0.38 -1.4
2,051,424 - LRK53_RS09165 0.38 -1.1
2,051,424 - LRK53_RS09165 0.38 -1.1
2,051,424 - LRK53_RS09165 0.38 -1.7
2,051,424 - LRK53_RS09165 0.38 -1.3
2,051,424 - LRK53_RS09165 0.38 -1.1
2,051,424 - LRK53_RS09165 0.38 -0.7
2,051,424 - LRK53_RS09165 0.38 -2.8
2,051,424 - LRK53_RS09165 0.38 -1.1
2,051,424 - LRK53_RS09165 0.38 -1.9
2,051,424 - LRK53_RS09165 0.38 -1.9
2,051,424 - LRK53_RS09165 0.38 -1.1
2,051,424 - LRK53_RS09165 0.38 -2.7
2,051,424 - LRK53_RS09165 0.38 +0.3
2,051,424 - LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 -1.4
2,051,424 - LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 -0.1
2,051,424 - LRK53_RS09165 0.38 -0.7
2,051,424 - LRK53_RS09165 0.38 -1.4
2,051,599 + LRK53_RS09165 0.57 -0.9
2,051,599 + LRK53_RS09165 0.57 -2.1
2,051,599 + LRK53_RS09165 0.57 -1.0
2,051,599 + LRK53_RS09165 0.57 -0.9
2,051,600 - LRK53_RS09165 0.57 -0.1
2,051,600 - LRK53_RS09165 0.57 +0.5
2,051,600 - LRK53_RS09165 0.57 -0.5
2,051,600 - LRK53_RS09165 0.57 -1.9
2,051,600 - LRK53_RS09165 0.57 +1.7
2,051,600 - LRK53_RS09165 0.57 -0.8
2,051,600 - LRK53_RS09165 0.57 +0.3
2,051,600 - LRK53_RS09165 0.57 +0.9
2,051,600 - LRK53_RS09165 0.57 -3.3
2,051,654 + LRK53_RS09165 0.63 -1.4
2,052,170 - LRK53_RS09170 0.14 -0.7
2,052,604 + LRK53_RS09170 0.50 -0.9
2,052,605 - LRK53_RS09170 0.50 -0.7
2,052,605 - LRK53_RS09170 0.50 +2.5
2,052,605 - LRK53_RS09170 0.50 -0.7
2,052,760 + LRK53_RS09170 0.63 -0.1
2,052,761 - LRK53_RS09170 0.63 +0.9
2,052,802 + LRK53_RS09170 0.67 -0.9
2,052,850 + LRK53_RS09170 0.71 -1.1
2,052,850 + LRK53_RS09170 0.71 -0.7

Or see this region's nucleotide sequence