Experiment: R2A_PIPES with Cobalt chloride 512 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09160 and LRK53_RS09165 are separated by 292 nucleotides LRK53_RS09165 and LRK53_RS09170 overlap by 4 nucleotides
LRK53_RS09160: LRK53_RS09160 - 2-oxoglutarate dehydrogenase E1 component, at 2,047,926 to 2,050,766
_RS09160
LRK53_RS09165: LRK53_RS09165 - GNAT family N-acetyltransferase, at 2,051,059 to 2,052,009
_RS09165
LRK53_RS09170: LRK53_RS09170 - cupin domain-containing protein, at 2,052,006 to 2,053,199
_RS09170
Position (kb)
2051
2052
2053 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2050.892 kb on - strand at 2050.892 kb on - strand at 2050.892 kb on - strand at 2050.892 kb on - strand at 2050.951 kb on + strand at 2050.952 kb on - strand at 2050.968 kb on + strand at 2050.968 kb on + strand at 2050.968 kb on + strand at 2050.968 kb on + strand at 2050.969 kb on - strand at 2050.969 kb on - strand at 2050.969 kb on - strand at 2051.202 kb on - strand, within LRK53_RS09165 at 2051.202 kb on - strand, within LRK53_RS09165 at 2051.355 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.423 kb on + strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.424 kb on - strand, within LRK53_RS09165 at 2051.599 kb on + strand, within LRK53_RS09165 at 2051.599 kb on + strand, within LRK53_RS09165 at 2051.599 kb on + strand, within LRK53_RS09165 at 2051.599 kb on + strand, within LRK53_RS09165 at 2051.600 kb on - strand, within LRK53_RS09165 at 2051.600 kb on - strand, within LRK53_RS09165 at 2051.600 kb on - strand, within LRK53_RS09165 at 2051.600 kb on - strand, within LRK53_RS09165 at 2051.600 kb on - strand, within LRK53_RS09165 at 2051.600 kb on - strand, within LRK53_RS09165 at 2051.600 kb on - strand, within LRK53_RS09165 at 2051.600 kb on - strand, within LRK53_RS09165 at 2051.600 kb on - strand, within LRK53_RS09165 at 2051.654 kb on + strand, within LRK53_RS09165 at 2052.170 kb on - strand, within LRK53_RS09170 at 2052.604 kb on + strand, within LRK53_RS09170 at 2052.605 kb on - strand, within LRK53_RS09170 at 2052.605 kb on - strand, within LRK53_RS09170 at 2052.605 kb on - strand, within LRK53_RS09170 at 2052.760 kb on + strand, within LRK53_RS09170 at 2052.761 kb on - strand, within LRK53_RS09170 at 2052.802 kb on + strand, within LRK53_RS09170 at 2052.850 kb on + strand, within LRK53_RS09170 at 2052.850 kb on + strand, within LRK53_RS09170
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM remove 2,050,892 - +0.3 2,050,892 - -0.6 2,050,892 - -0.7 2,050,892 - +0.3 2,050,951 + -0.5 2,050,952 - -1.0 2,050,968 + +0.9 2,050,968 + -0.6 2,050,968 + -0.4 2,050,968 + -0.4 2,050,969 - -0.1 2,050,969 - -0.2 2,050,969 - -0.7 2,051,202 - LRK53_RS09165 0.15 -1.4 2,051,202 - LRK53_RS09165 0.15 -0.1 2,051,355 + LRK53_RS09165 0.31 -0.4 2,051,423 + LRK53_RS09165 0.38 -0.1 2,051,423 + LRK53_RS09165 0.38 -1.7 2,051,423 + LRK53_RS09165 0.38 -1.1 2,051,423 + LRK53_RS09165 0.38 -0.3 2,051,423 + LRK53_RS09165 0.38 -0.1 2,051,423 + LRK53_RS09165 0.38 -1.9 2,051,423 + LRK53_RS09165 0.38 +0.6 2,051,423 + LRK53_RS09165 0.38 -2.3 2,051,423 + LRK53_RS09165 0.38 -0.6 2,051,423 + LRK53_RS09165 0.38 -0.7 2,051,423 + LRK53_RS09165 0.38 -1.7 2,051,423 + LRK53_RS09165 0.38 -1.1 2,051,423 + LRK53_RS09165 0.38 -0.7 2,051,423 + LRK53_RS09165 0.38 +0.2 2,051,423 + LRK53_RS09165 0.38 -0.5 2,051,423 + LRK53_RS09165 0.38 +1.5 2,051,423 + LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 -1.7 2,051,424 - LRK53_RS09165 0.38 +0.6 2,051,424 - LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 -1.7 2,051,424 - LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 +1.5 2,051,424 - LRK53_RS09165 0.38 +0.0 2,051,424 - LRK53_RS09165 0.38 -1.3 2,051,424 - LRK53_RS09165 0.38 +0.9 2,051,424 - LRK53_RS09165 0.38 -1.4 2,051,424 - LRK53_RS09165 0.38 -1.1 2,051,424 - LRK53_RS09165 0.38 -1.1 2,051,424 - LRK53_RS09165 0.38 -1.7 2,051,424 - LRK53_RS09165 0.38 -1.3 2,051,424 - LRK53_RS09165 0.38 -1.1 2,051,424 - LRK53_RS09165 0.38 -0.7 2,051,424 - LRK53_RS09165 0.38 -2.8 2,051,424 - LRK53_RS09165 0.38 -1.1 2,051,424 - LRK53_RS09165 0.38 -1.9 2,051,424 - LRK53_RS09165 0.38 -1.9 2,051,424 - LRK53_RS09165 0.38 -1.1 2,051,424 - LRK53_RS09165 0.38 -2.7 2,051,424 - LRK53_RS09165 0.38 +0.3 2,051,424 - LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 -1.4 2,051,424 - LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 -0.1 2,051,424 - LRK53_RS09165 0.38 -0.7 2,051,424 - LRK53_RS09165 0.38 -1.4 2,051,599 + LRK53_RS09165 0.57 -0.9 2,051,599 + LRK53_RS09165 0.57 -2.1 2,051,599 + LRK53_RS09165 0.57 -1.0 2,051,599 + LRK53_RS09165 0.57 -0.9 2,051,600 - LRK53_RS09165 0.57 -0.1 2,051,600 - LRK53_RS09165 0.57 +0.5 2,051,600 - LRK53_RS09165 0.57 -0.5 2,051,600 - LRK53_RS09165 0.57 -1.9 2,051,600 - LRK53_RS09165 0.57 +1.7 2,051,600 - LRK53_RS09165 0.57 -0.8 2,051,600 - LRK53_RS09165 0.57 +0.3 2,051,600 - LRK53_RS09165 0.57 +0.9 2,051,600 - LRK53_RS09165 0.57 -3.3 2,051,654 + LRK53_RS09165 0.63 -1.4 2,052,170 - LRK53_RS09170 0.14 -0.7 2,052,604 + LRK53_RS09170 0.50 -0.9 2,052,605 - LRK53_RS09170 0.50 -0.7 2,052,605 - LRK53_RS09170 0.50 +2.5 2,052,605 - LRK53_RS09170 0.50 -0.7 2,052,760 + LRK53_RS09170 0.63 -0.1 2,052,761 - LRK53_RS09170 0.63 +0.9 2,052,802 + LRK53_RS09170 0.67 -0.9 2,052,850 + LRK53_RS09170 0.71 -1.1 2,052,850 + LRK53_RS09170 0.71 -0.7
Or see this region's nucleotide sequence