Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17380

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS17370 and LRK53_RS17375 are separated by 189 nucleotidesLRK53_RS17375 and LRK53_RS17380 are separated by 11 nucleotidesLRK53_RS17380 and LRK53_RS17385 are separated by 41 nucleotides LRK53_RS17370: LRK53_RS17370 - biotin--[acetyl-CoA-carboxylase] ligase, at 3,814,044 to 3,815,033 _RS17370 LRK53_RS17375: LRK53_RS17375 - hypothetical protein, at 3,815,223 to 3,815,546 _RS17375 LRK53_RS17380: LRK53_RS17380 - zinc-dependent peptidase, at 3,815,558 to 3,816,352 _RS17380 LRK53_RS17385: LRK53_RS17385 - ATP-binding protein, at 3,816,394 to 3,817,815 _RS17385 Position (kb) 3815 3816 3817Strain fitness (log2 ratio) -2 -1 0 1 2at 3815.110 kb on - strandat 3815.161 kb on - strandat 3815.201 kb on + strandat 3815.243 kb on + strandat 3815.243 kb on + strandat 3815.243 kb on + strandat 3815.429 kb on + strand, within LRK53_RS17375at 3815.429 kb on + strand, within LRK53_RS17375at 3815.759 kb on + strand, within LRK53_RS17380at 3815.759 kb on + strand, within LRK53_RS17380at 3815.759 kb on + strand, within LRK53_RS17380at 3815.759 kb on + strand, within LRK53_RS17380at 3815.760 kb on - strand, within LRK53_RS17380at 3815.760 kb on - strand, within LRK53_RS17380at 3815.850 kb on - strand, within LRK53_RS17380at 3815.850 kb on - strand, within LRK53_RS17380at 3816.008 kb on + strand, within LRK53_RS17380at 3816.008 kb on + strand, within LRK53_RS17380at 3816.008 kb on + strand, within LRK53_RS17380at 3816.008 kb on + strand, within LRK53_RS17380at 3816.008 kb on + strand, within LRK53_RS17380at 3816.008 kb on + strand, within LRK53_RS17380at 3816.009 kb on - strand, within LRK53_RS17380at 3816.009 kb on - strand, within LRK53_RS17380at 3816.009 kb on - strand, within LRK53_RS17380at 3816.009 kb on - strand, within LRK53_RS17380at 3816.009 kb on - strand, within LRK53_RS17380at 3816.009 kb on - strand, within LRK53_RS17380at 3816.009 kb on - strand, within LRK53_RS17380at 3816.128 kb on + strand, within LRK53_RS17380at 3816.128 kb on + strand, within LRK53_RS17380at 3816.128 kb on + strand, within LRK53_RS17380at 3816.129 kb on - strand, within LRK53_RS17380at 3816.129 kb on - strand, within LRK53_RS17380at 3816.129 kb on - strand, within LRK53_RS17380at 3816.182 kb on + strand, within LRK53_RS17380at 3816.183 kb on - strand, within LRK53_RS17380at 3816.183 kb on - strand, within LRK53_RS17380at 3816.206 kb on + strand, within LRK53_RS17380at 3816.206 kb on + strand, within LRK53_RS17380at 3816.206 kb on + strand, within LRK53_RS17380at 3816.207 kb on - strand, within LRK53_RS17380at 3816.233 kb on + strand, within LRK53_RS17380at 3816.234 kb on - strand, within LRK53_RS17380at 3816.234 kb on - strand, within LRK53_RS17380at 3816.234 kb on - strand, within LRK53_RS17380at 3816.234 kb on - strand, within LRK53_RS17380at 3816.296 kb on + strandat 3816.296 kb on + strandat 3816.296 kb on + strandat 3816.296 kb on + strandat 3816.296 kb on + strandat 3816.296 kb on + strandat 3816.296 kb on + strandat 3816.296 kb on + strandat 3816.296 kb on + strandat 3816.296 kb on + strandat 3816.297 kb on - strandat 3816.297 kb on - strandat 3816.297 kb on - strandat 3816.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
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3,815,110 - -1.7
3,815,161 - +0.1
3,815,201 + -1.2
3,815,243 + -1.9
3,815,243 + -1.4
3,815,243 + -1.8
3,815,429 + LRK53_RS17375 0.64 -0.9
3,815,429 + LRK53_RS17375 0.64 -1.4
3,815,759 + LRK53_RS17380 0.25 +2.1
3,815,759 + LRK53_RS17380 0.25 -1.4
3,815,759 + LRK53_RS17380 0.25 -0.9
3,815,759 + LRK53_RS17380 0.25 -0.4
3,815,760 - LRK53_RS17380 0.25 -0.4
3,815,760 - LRK53_RS17380 0.25 +1.1
3,815,850 - LRK53_RS17380 0.37 -2.1
3,815,850 - LRK53_RS17380 0.37 +0.7
3,816,008 + LRK53_RS17380 0.57 +0.1
3,816,008 + LRK53_RS17380 0.57 -0.9
3,816,008 + LRK53_RS17380 0.57 +0.2
3,816,008 + LRK53_RS17380 0.57 +0.1
3,816,008 + LRK53_RS17380 0.57 -0.2
3,816,008 + LRK53_RS17380 0.57 -0.3
3,816,009 - LRK53_RS17380 0.57 +1.7
3,816,009 - LRK53_RS17380 0.57 -1.3
3,816,009 - LRK53_RS17380 0.57 +0.7
3,816,009 - LRK53_RS17380 0.57 +0.4
3,816,009 - LRK53_RS17380 0.57 -1.2
3,816,009 - LRK53_RS17380 0.57 +0.7
3,816,009 - LRK53_RS17380 0.57 +0.4
3,816,128 + LRK53_RS17380 0.72 -0.2
3,816,128 + LRK53_RS17380 0.72 +0.1
3,816,128 + LRK53_RS17380 0.72 +1.1
3,816,129 - LRK53_RS17380 0.72 -0.1
3,816,129 - LRK53_RS17380 0.72 +0.1
3,816,129 - LRK53_RS17380 0.72 +0.7
3,816,182 + LRK53_RS17380 0.78 +1.1
3,816,183 - LRK53_RS17380 0.79 -0.7
3,816,183 - LRK53_RS17380 0.79 -1.2
3,816,206 + LRK53_RS17380 0.82 +1.1
3,816,206 + LRK53_RS17380 0.82 -1.4
3,816,206 + LRK53_RS17380 0.82 -1.4
3,816,207 - LRK53_RS17380 0.82 +0.1
3,816,233 + LRK53_RS17380 0.85 -0.9
3,816,234 - LRK53_RS17380 0.85 +0.1
3,816,234 - LRK53_RS17380 0.85 -0.9
3,816,234 - LRK53_RS17380 0.85 +1.4
3,816,234 - LRK53_RS17380 0.85 -1.2
3,816,296 + -1.6
3,816,296 + -1.7
3,816,296 + -0.4
3,816,296 + +0.1
3,816,296 + -2.1
3,816,296 + -0.2
3,816,296 + -0.3
3,816,296 + -0.8
3,816,296 + -0.5
3,816,296 + -1.2
3,816,297 - -0.7
3,816,297 - -0.7
3,816,297 - +0.1
3,816,297 - -1.4

Or see this region's nucleotide sequence