Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS17370 and LRK53_RS17375 are separated by 189 nucleotides LRK53_RS17375 and LRK53_RS17380 are separated by 11 nucleotides LRK53_RS17380 and LRK53_RS17385 are separated by 41 nucleotides
LRK53_RS17370: LRK53_RS17370 - biotin--[acetyl-CoA-carboxylase] ligase, at 3,814,044 to 3,815,033
_RS17370
LRK53_RS17375: LRK53_RS17375 - hypothetical protein, at 3,815,223 to 3,815,546
_RS17375
LRK53_RS17380: LRK53_RS17380 - zinc-dependent peptidase, at 3,815,558 to 3,816,352
_RS17380
LRK53_RS17385: LRK53_RS17385 - ATP-binding protein, at 3,816,394 to 3,817,815
_RS17385
Position (kb)
3815
3816
3817 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3815.110 kb on - strand at 3815.161 kb on - strand at 3815.201 kb on + strand at 3815.243 kb on + strand at 3815.243 kb on + strand at 3815.243 kb on + strand at 3815.429 kb on + strand, within LRK53_RS17375 at 3815.429 kb on + strand, within LRK53_RS17375 at 3815.759 kb on + strand, within LRK53_RS17380 at 3815.759 kb on + strand, within LRK53_RS17380 at 3815.759 kb on + strand, within LRK53_RS17380 at 3815.759 kb on + strand, within LRK53_RS17380 at 3815.760 kb on - strand, within LRK53_RS17380 at 3815.760 kb on - strand, within LRK53_RS17380 at 3815.850 kb on - strand, within LRK53_RS17380 at 3815.850 kb on - strand, within LRK53_RS17380 at 3816.008 kb on + strand, within LRK53_RS17380 at 3816.008 kb on + strand, within LRK53_RS17380 at 3816.008 kb on + strand, within LRK53_RS17380 at 3816.008 kb on + strand, within LRK53_RS17380 at 3816.008 kb on + strand, within LRK53_RS17380 at 3816.008 kb on + strand, within LRK53_RS17380 at 3816.009 kb on - strand, within LRK53_RS17380 at 3816.009 kb on - strand, within LRK53_RS17380 at 3816.009 kb on - strand, within LRK53_RS17380 at 3816.009 kb on - strand, within LRK53_RS17380 at 3816.009 kb on - strand, within LRK53_RS17380 at 3816.009 kb on - strand, within LRK53_RS17380 at 3816.009 kb on - strand, within LRK53_RS17380 at 3816.128 kb on + strand, within LRK53_RS17380 at 3816.128 kb on + strand, within LRK53_RS17380 at 3816.128 kb on + strand, within LRK53_RS17380 at 3816.129 kb on - strand, within LRK53_RS17380 at 3816.129 kb on - strand, within LRK53_RS17380 at 3816.129 kb on - strand, within LRK53_RS17380 at 3816.182 kb on + strand, within LRK53_RS17380 at 3816.183 kb on - strand, within LRK53_RS17380 at 3816.183 kb on - strand, within LRK53_RS17380 at 3816.206 kb on + strand, within LRK53_RS17380 at 3816.206 kb on + strand, within LRK53_RS17380 at 3816.206 kb on + strand, within LRK53_RS17380 at 3816.207 kb on - strand, within LRK53_RS17380 at 3816.233 kb on + strand, within LRK53_RS17380 at 3816.234 kb on - strand, within LRK53_RS17380 at 3816.234 kb on - strand, within LRK53_RS17380 at 3816.234 kb on - strand, within LRK53_RS17380 at 3816.234 kb on - strand, within LRK53_RS17380 at 3816.296 kb on + strand at 3816.296 kb on + strand at 3816.296 kb on + strand at 3816.296 kb on + strand at 3816.296 kb on + strand at 3816.296 kb on + strand at 3816.296 kb on + strand at 3816.296 kb on + strand at 3816.296 kb on + strand at 3816.296 kb on + strand at 3816.297 kb on - strand at 3816.297 kb on - strand at 3816.297 kb on - strand at 3816.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM remove 3,815,110 - -1.7 3,815,161 - +0.1 3,815,201 + -1.2 3,815,243 + -1.9 3,815,243 + -1.4 3,815,243 + -1.8 3,815,429 + LRK53_RS17375 0.64 -0.9 3,815,429 + LRK53_RS17375 0.64 -1.4 3,815,759 + LRK53_RS17380 0.25 +2.1 3,815,759 + LRK53_RS17380 0.25 -1.4 3,815,759 + LRK53_RS17380 0.25 -0.9 3,815,759 + LRK53_RS17380 0.25 -0.4 3,815,760 - LRK53_RS17380 0.25 -0.4 3,815,760 - LRK53_RS17380 0.25 +1.1 3,815,850 - LRK53_RS17380 0.37 -2.1 3,815,850 - LRK53_RS17380 0.37 +0.7 3,816,008 + LRK53_RS17380 0.57 +0.1 3,816,008 + LRK53_RS17380 0.57 -0.9 3,816,008 + LRK53_RS17380 0.57 +0.2 3,816,008 + LRK53_RS17380 0.57 +0.1 3,816,008 + LRK53_RS17380 0.57 -0.2 3,816,008 + LRK53_RS17380 0.57 -0.3 3,816,009 - LRK53_RS17380 0.57 +1.7 3,816,009 - LRK53_RS17380 0.57 -1.3 3,816,009 - LRK53_RS17380 0.57 +0.7 3,816,009 - LRK53_RS17380 0.57 +0.4 3,816,009 - LRK53_RS17380 0.57 -1.2 3,816,009 - LRK53_RS17380 0.57 +0.7 3,816,009 - LRK53_RS17380 0.57 +0.4 3,816,128 + LRK53_RS17380 0.72 -0.2 3,816,128 + LRK53_RS17380 0.72 +0.1 3,816,128 + LRK53_RS17380 0.72 +1.1 3,816,129 - LRK53_RS17380 0.72 -0.1 3,816,129 - LRK53_RS17380 0.72 +0.1 3,816,129 - LRK53_RS17380 0.72 +0.7 3,816,182 + LRK53_RS17380 0.78 +1.1 3,816,183 - LRK53_RS17380 0.79 -0.7 3,816,183 - LRK53_RS17380 0.79 -1.2 3,816,206 + LRK53_RS17380 0.82 +1.1 3,816,206 + LRK53_RS17380 0.82 -1.4 3,816,206 + LRK53_RS17380 0.82 -1.4 3,816,207 - LRK53_RS17380 0.82 +0.1 3,816,233 + LRK53_RS17380 0.85 -0.9 3,816,234 - LRK53_RS17380 0.85 +0.1 3,816,234 - LRK53_RS17380 0.85 -0.9 3,816,234 - LRK53_RS17380 0.85 +1.4 3,816,234 - LRK53_RS17380 0.85 -1.2 3,816,296 + -1.6 3,816,296 + -1.7 3,816,296 + -0.4 3,816,296 + +0.1 3,816,296 + -2.1 3,816,296 + -0.2 3,816,296 + -0.3 3,816,296 + -0.8 3,816,296 + -0.5 3,816,296 + -1.2 3,816,297 - -0.7 3,816,297 - -0.7 3,816,297 - +0.1 3,816,297 - -1.4
Or see this region's nucleotide sequence