Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_08715

Experiment: G1M3_D3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_08700 and HUW76_08705 are separated by 42 nucleotidesHUW76_08705 and HUW76_08710 are separated by 88 nucleotidesHUW76_08710 and HUW76_08715 are separated by 50 nucleotidesHUW76_08715 and HUW76_08720 overlap by 4 nucleotidesHUW76_08720 and HUW76_08725 are separated by 10 nucleotides HUW76_08700: HUW76_08700 - aspartate/glutamate racemase family protein, at 1,825,541 to 1,826,314 _08700 HUW76_08705: HUW76_08705 - 50S ribosomal protein L19, at 1,826,357 to 1,826,707 _08705 HUW76_08710: HUW76_08710 - hypothetical protein, at 1,826,796 to 1,826,993 _08710 HUW76_08715: HUW76_08715 - histidinol-phosphatase HisJ family protein, at 1,827,044 to 1,827,820 _08715 HUW76_08720: HUW76_08720 - orotate phosphoribosyltransferase, at 1,827,817 to 1,828,434 _08720 HUW76_08725: HUW76_08725 - hypothetical protein, at 1,828,445 to 1,829,329 _08725 Position (kb) 1827 1828Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1826.102 kb on - strand, within HUW76_08700at 1826.107 kb on - strand, within HUW76_08700at 1826.107 kb on - strand, within HUW76_08700at 1826.150 kb on + strand, within HUW76_08700at 1826.150 kb on + strand, within HUW76_08700at 1826.150 kb on + strand, within HUW76_08700at 1826.152 kb on + strand, within HUW76_08700at 1826.152 kb on + strand, within HUW76_08700at 1826.152 kb on + strand, within HUW76_08700at 1826.158 kb on - strand, within HUW76_08700at 1826.158 kb on - strand, within HUW76_08700at 1826.158 kb on - strand, within HUW76_08700at 1826.160 kb on - strand, within HUW76_08700at 1826.160 kb on - strand, within HUW76_08700at 1826.160 kb on - strand, within HUW76_08700at 1826.160 kb on - strand, within HUW76_08700at 1826.160 kb on - strand, within HUW76_08700at 1826.160 kb on - strand, within HUW76_08700at 1826.162 kb on + strand, within HUW76_08700at 1826.162 kb on + strand, within HUW76_08700at 1826.162 kb on + strand, within HUW76_08700at 1826.162 kb on + strand, within HUW76_08700at 1826.162 kb on + strand, within HUW76_08700at 1826.170 kb on - strand, within HUW76_08700at 1826.170 kb on - strand, within HUW76_08700at 1826.170 kb on - strand, within HUW76_08700at 1826.200 kb on + strand, within HUW76_08700at 1826.200 kb on + strand, within HUW76_08700at 1826.208 kb on - strand, within HUW76_08700at 1826.221 kb on + strand, within HUW76_08700at 1826.221 kb on + strand, within HUW76_08700at 1826.253 kb on - strandat 1826.253 kb on - strandat 1826.294 kb on - strandat 1826.294 kb on - strandat 1826.424 kb on - strand, within HUW76_08705at 1827.298 kb on + strand, within HUW76_08715at 1827.298 kb on + strand, within HUW76_08715at 1827.306 kb on - strand, within HUW76_08715at 1827.438 kb on - strand, within HUW76_08715at 1827.454 kb on - strand, within HUW76_08715at 1827.454 kb on - strand, within HUW76_08715at 1827.516 kb on - strand, within HUW76_08715at 1827.715 kb on + strand, within HUW76_08715at 1827.715 kb on - strand, within HUW76_08715at 1827.769 kb on - strandat 1827.769 kb on - strandat 1827.805 kb on - strandat 1827.878 kb on - strandat 1827.878 kb on - strandat 1827.990 kb on + strand, within HUW76_08720at 1827.990 kb on + strand, within HUW76_08720at 1828.029 kb on - strand, within HUW76_08720at 1828.082 kb on + strand, within HUW76_08720at 1828.090 kb on - strand, within HUW76_08720at 1828.090 kb on - strand, within HUW76_08720at 1828.129 kb on + strand, within HUW76_08720at 1828.129 kb on + strand, within HUW76_08720at 1828.137 kb on - strand, within HUW76_08720at 1828.137 kb on - strand, within HUW76_08720at 1828.137 kb on - strand, within HUW76_08720at 1828.137 kb on - strand, within HUW76_08720at 1828.150 kb on - strand, within HUW76_08720at 1828.163 kb on - strand, within HUW76_08720at 1828.163 kb on - strand, within HUW76_08720at 1828.165 kb on + strand, within HUW76_08720at 1828.168 kb on - strand, within HUW76_08720at 1828.168 kb on - strand, within HUW76_08720at 1828.170 kb on + strand, within HUW76_08720at 1828.170 kb on + strand, within HUW76_08720at 1828.180 kb on + strand, within HUW76_08720at 1828.238 kb on + strand, within HUW76_08720at 1828.238 kb on + strand, within HUW76_08720at 1828.240 kb on + strand, within HUW76_08720at 1828.240 kb on + strand, within HUW76_08720at 1828.295 kb on + strand, within HUW76_08720at 1828.295 kb on + strand, within HUW76_08720at 1828.295 kb on + strand, within HUW76_08720at 1828.295 kb on + strand, within HUW76_08720at 1828.295 kb on + strand, within HUW76_08720at 1828.303 kb on - strand, within HUW76_08720at 1828.303 kb on - strand, within HUW76_08720at 1828.309 kb on - strand, within HUW76_08720at 1828.324 kb on + strand, within HUW76_08720at 1828.324 kb on + strand, within HUW76_08720at 1828.332 kb on - strand, within HUW76_08720at 1828.332 kb on - strand, within HUW76_08720at 1828.332 kb on - strand, within HUW76_08720at 1828.504 kb on + strandat 1828.504 kb on + strandat 1828.504 kb on + strandat 1828.512 kb on - strandat 1828.512 kb on - strandat 1828.512 kb on - strandat 1828.512 kb on - strandat 1828.595 kb on - strand, within HUW76_08725at 1828.595 kb on - strand, within HUW76_08725at 1828.602 kb on - strand, within HUW76_08725at 1828.602 kb on - strand, within HUW76_08725at 1828.632 kb on - strand, within HUW76_08725at 1828.632 kb on - strand, within HUW76_08725at 1828.632 kb on - strand, within HUW76_08725at 1828.718 kb on + strand, within HUW76_08725at 1828.718 kb on + strand, within HUW76_08725at 1828.718 kb on + strand, within HUW76_08725at 1828.718 kb on + strand, within HUW76_08725at 1828.718 kb on - strand, within HUW76_08725at 1828.718 kb on - strand, within HUW76_08725

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M3_D3
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1,826,102 - HUW76_08700 0.72 -1.4
1,826,107 - HUW76_08700 0.73 +0.7
1,826,107 - HUW76_08700 0.73 +1.0
1,826,150 + HUW76_08700 0.79 +2.5
1,826,150 + HUW76_08700 0.79 +0.3
1,826,150 + HUW76_08700 0.79 -1.1
1,826,152 + HUW76_08700 0.79 +2.5
1,826,152 + HUW76_08700 0.79 +0.2
1,826,152 + HUW76_08700 0.79 -0.2
1,826,158 - HUW76_08700 0.80 -2.2
1,826,158 - HUW76_08700 0.80 -0.0
1,826,158 - HUW76_08700 0.80 -1.1
1,826,160 - HUW76_08700 0.80 -0.8
1,826,160 - HUW76_08700 0.80 +0.4
1,826,160 - HUW76_08700 0.80 +0.0
1,826,160 - HUW76_08700 0.80 -1.8
1,826,160 - HUW76_08700 0.80 +1.4
1,826,160 - HUW76_08700 0.80 -0.3
1,826,162 + HUW76_08700 0.80 -0.3
1,826,162 + HUW76_08700 0.80 +0.6
1,826,162 + HUW76_08700 0.80 +1.5
1,826,162 + HUW76_08700 0.80 +0.8
1,826,162 + HUW76_08700 0.80 +0.3
1,826,170 - HUW76_08700 0.81 +0.5
1,826,170 - HUW76_08700 0.81 -1.3
1,826,170 - HUW76_08700 0.81 -2.1
1,826,200 + HUW76_08700 0.85 +1.5
1,826,200 + HUW76_08700 0.85 +0.2
1,826,208 - HUW76_08700 0.86 -2.7
1,826,221 + HUW76_08700 0.88 +0.5
1,826,221 + HUW76_08700 0.88 -0.4
1,826,253 - +0.5
1,826,253 - -0.5
1,826,294 - -0.1
1,826,294 - -1.1
1,826,424 - HUW76_08705 0.19 -1.0
1,827,298 + HUW76_08715 0.33 -1.1
1,827,298 + HUW76_08715 0.33 -0.3
1,827,306 - HUW76_08715 0.34 +0.4
1,827,438 - HUW76_08715 0.51 +0.1
1,827,454 - HUW76_08715 0.53 -0.3
1,827,454 - HUW76_08715 0.53 -0.5
1,827,516 - HUW76_08715 0.61 -1.2
1,827,715 + HUW76_08715 0.86 -2.5
1,827,715 - HUW76_08715 0.86 +0.7
1,827,769 - +1.2
1,827,769 - +1.3
1,827,805 - -0.7
1,827,878 - -4.0
1,827,878 - -2.6
1,827,990 + HUW76_08720 0.28 -4.0
1,827,990 + HUW76_08720 0.28 -2.9
1,828,029 - HUW76_08720 0.34 -4.2
1,828,082 + HUW76_08720 0.43 -4.3
1,828,090 - HUW76_08720 0.44 -3.4
1,828,090 - HUW76_08720 0.44 -4.1
1,828,129 + HUW76_08720 0.50 -2.6
1,828,129 + HUW76_08720 0.50 -2.4
1,828,137 - HUW76_08720 0.52 -3.3
1,828,137 - HUW76_08720 0.52 -4.4
1,828,137 - HUW76_08720 0.52 -1.3
1,828,137 - HUW76_08720 0.52 +1.5
1,828,150 - HUW76_08720 0.54 -4.5
1,828,163 - HUW76_08720 0.56 -3.5
1,828,163 - HUW76_08720 0.56 -2.6
1,828,165 + HUW76_08720 0.56 -2.2
1,828,168 - HUW76_08720 0.57 -4.0
1,828,168 - HUW76_08720 0.57 -3.8
1,828,170 + HUW76_08720 0.57 +0.7
1,828,170 + HUW76_08720 0.57 +0.7
1,828,180 + HUW76_08720 0.59 -4.1
1,828,238 + HUW76_08720 0.68 +0.9
1,828,238 + HUW76_08720 0.68 -1.5
1,828,240 + HUW76_08720 0.68 -2.2
1,828,240 + HUW76_08720 0.68 -0.9
1,828,295 + HUW76_08720 0.77 -2.8
1,828,295 + HUW76_08720 0.77 -1.5
1,828,295 + HUW76_08720 0.77 -4.5
1,828,295 + HUW76_08720 0.77 -2.4
1,828,295 + HUW76_08720 0.77 -1.5
1,828,303 - HUW76_08720 0.79 -2.6
1,828,303 - HUW76_08720 0.79 -4.9
1,828,309 - HUW76_08720 0.80 -4.7
1,828,324 + HUW76_08720 0.82 +2.1
1,828,324 + HUW76_08720 0.82 -2.0
1,828,332 - HUW76_08720 0.83 -4.0
1,828,332 - HUW76_08720 0.83 -3.8
1,828,332 - HUW76_08720 0.83 -2.7
1,828,504 + -3.4
1,828,504 + -2.6
1,828,504 + -0.3
1,828,512 - -0.0
1,828,512 - -0.3
1,828,512 - -2.4
1,828,512 - -0.3
1,828,595 - HUW76_08725 0.17 +0.7
1,828,595 - HUW76_08725 0.17 +0.7
1,828,602 - HUW76_08725 0.18 -0.2
1,828,602 - HUW76_08725 0.18 -1.8
1,828,632 - HUW76_08725 0.21 +0.2
1,828,632 - HUW76_08725 0.21 +0.2
1,828,632 - HUW76_08725 0.21 -2.9
1,828,718 + HUW76_08725 0.31 -1.3
1,828,718 + HUW76_08725 0.31 -1.7
1,828,718 + HUW76_08725 0.31 +0.4
1,828,718 + HUW76_08725 0.31 -0.5
1,828,718 - HUW76_08725 0.31 +0.4
1,828,718 - HUW76_08725 0.31 -1.9

Or see this region's nucleotide sequence