Experiment: G1M3_D3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_07575 and HUW76_07580 are separated by 401 nucleotides HUW76_07580 and HUW76_07585 are separated by 190 nucleotides HUW76_07585 and HUW76_07590 are separated by 2 nucleotides HUW76_07590 and HUW76_07595 are separated by 23 nucleotides
HUW76_07575: HUW76_07575 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 1,589,361 to 1,590,080
_07575
HUW76_07580: HUW76_07580 - HrgC protein, at 1,590,482 to 1,590,769
_07580
HUW76_07585: HUW76_07585 - alanine racemase, at 1,590,960 to 1,592,039
_07585
HUW76_07590: HUW76_07590 - DUF368 domain-containing protein, at 1,592,042 to 1,592,818
_07590
HUW76_07595: HUW76_07595 - prolipoprotein diacylglyceryl transferase, at 1,592,842 to 1,593,729
_07595
Position (kb)
1590
1591
1592
1593 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1590.212 kb on - strand at 1590.212 kb on - strand at 1590.212 kb on - strand at 1590.212 kb on - strand at 1590.212 kb on - strand at 1590.212 kb on - strand at 1590.219 kb on - strand at 1590.219 kb on - strand at 1590.359 kb on - strand at 1590.359 kb on - strand at 1590.359 kb on - strand at 1590.359 kb on - strand at 1590.416 kb on - strand at 1590.473 kb on + strand at 1590.543 kb on + strand, within HUW76_07580 at 1590.543 kb on + strand, within HUW76_07580 at 1590.549 kb on - strand, within HUW76_07580 at 1590.551 kb on + strand, within HUW76_07580 at 1590.551 kb on + strand, within HUW76_07580 at 1590.559 kb on - strand, within HUW76_07580 at 1590.559 kb on - strand, within HUW76_07580 at 1590.588 kb on - strand, within HUW76_07580 at 1590.611 kb on + strand, within HUW76_07580 at 1590.614 kb on - strand, within HUW76_07580 at 1590.633 kb on + strand, within HUW76_07580 at 1590.647 kb on - strand, within HUW76_07580 at 1590.647 kb on - strand, within HUW76_07580 at 1590.692 kb on - strand, within HUW76_07580 at 1590.698 kb on + strand, within HUW76_07580 at 1590.706 kb on + strand, within HUW76_07580 at 1590.706 kb on + strand, within HUW76_07580 at 1590.760 kb on - strand at 1592.415 kb on + strand, within HUW76_07590 at 1592.688 kb on + strand, within HUW76_07590
Per-strain Table
Position Strand Gene LocusTag Fraction G1M3_D3 remove 1,590,212 - +1.9 1,590,212 - +0.8 1,590,212 - -1.4 1,590,212 - -0.5 1,590,212 - +1.0 1,590,212 - +0.6 1,590,219 - +0.3 1,590,219 - +1.0 1,590,359 - +1.6 1,590,359 - +1.0 1,590,359 - -0.6 1,590,359 - +0.3 1,590,416 - -1.4 1,590,473 + -2.2 1,590,543 + HUW76_07580 0.21 -1.0 1,590,543 + HUW76_07580 0.21 +0.3 1,590,549 - HUW76_07580 0.23 -0.5 1,590,551 + HUW76_07580 0.24 +0.2 1,590,551 + HUW76_07580 0.24 +0.2 1,590,559 - HUW76_07580 0.27 +0.6 1,590,559 - HUW76_07580 0.27 -0.2 1,590,588 - HUW76_07580 0.37 -0.0 1,590,611 + HUW76_07580 0.45 -1.8 1,590,614 - HUW76_07580 0.46 +2.0 1,590,633 + HUW76_07580 0.52 -1.1 1,590,647 - HUW76_07580 0.57 +0.7 1,590,647 - HUW76_07580 0.57 -1.0 1,590,692 - HUW76_07580 0.73 -0.0 1,590,698 + HUW76_07580 0.75 -0.3 1,590,706 + HUW76_07580 0.78 -1.5 1,590,706 + HUW76_07580 0.78 -0.1 1,590,760 - -1.6 1,592,415 + HUW76_07590 0.48 +1.2 1,592,688 + HUW76_07590 0.83 +0.4
Or see this region's nucleotide sequence