Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03705

Experiment: G1M3_D3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03695 and HUW76_03700 are separated by 74 nucleotidesHUW76_03700 and HUW76_03705 are separated by 1 nucleotidesHUW76_03705 and HUW76_03710 are separated by 2 nucleotides HUW76_03695: HUW76_03695 - DUF1858 domain-containing protein, at 738,154 to 738,348 _03695 HUW76_03700: HUW76_03700 - phosphatidate cytidylyltransferase, at 738,423 to 739,226 _03700 HUW76_03705: HUW76_03705 - CDP-alcohol phosphatidyltransferase family protein, at 739,228 to 739,827 _03705 HUW76_03710: HUW76_03710 - alpha/beta fold hydrolase, at 739,830 to 741,530 _03710 Position (kb) 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 738.240 kb on - strand, within HUW76_03695at 738.273 kb on - strand, within HUW76_03695at 738.326 kb on - strand, within HUW76_03695at 738.326 kb on - strand, within HUW76_03695at 738.336 kb on - strandat 738.385 kb on + strandat 738.385 kb on - strandat 738.385 kb on - strandat 738.475 kb on + strandat 738.475 kb on + strandat 738.477 kb on - strandat 738.477 kb on - strandat 738.480 kb on + strandat 738.480 kb on + strandat 738.480 kb on + strandat 738.480 kb on + strandat 738.480 kb on + strandat 738.483 kb on - strandat 738.488 kb on - strandat 738.488 kb on - strandat 738.489 kb on + strandat 738.489 kb on + strandat 738.593 kb on - strand, within HUW76_03700at 738.593 kb on - strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.667 kb on - strand, within HUW76_03700at 738.667 kb on - strand, within HUW76_03700at 738.667 kb on - strand, within HUW76_03700at 738.667 kb on - strand, within HUW76_03700at 738.667 kb on - strand, within HUW76_03700at 738.750 kb on - strand, within HUW76_03700at 738.750 kb on - strand, within HUW76_03700at 738.806 kb on - strand, within HUW76_03700at 738.817 kb on - strand, within HUW76_03700at 738.817 kb on - strand, within HUW76_03700at 738.881 kb on + strand, within HUW76_03700at 738.881 kb on + strand, within HUW76_03700at 738.881 kb on + strand, within HUW76_03700at 738.889 kb on - strand, within HUW76_03700at 739.258 kb on + strandat 739.258 kb on + strandat 739.258 kb on + strandat 739.258 kb on + strandat 739.258 kb on + strandat 739.258 kb on + strandat 739.266 kb on - strandat 739.266 kb on - strandat 739.381 kb on + strand, within HUW76_03705at 739.413 kb on + strand, within HUW76_03705at 739.428 kb on + strand, within HUW76_03705at 739.428 kb on + strand, within HUW76_03705at 739.436 kb on - strand, within HUW76_03705at 739.456 kb on - strand, within HUW76_03705at 739.477 kb on - strand, within HUW76_03705at 739.477 kb on - strand, within HUW76_03705at 739.601 kb on - strand, within HUW76_03705at 739.721 kb on - strand, within HUW76_03705at 739.721 kb on - strand, within HUW76_03705at 739.828 kb on + strandat 739.833 kb on + strandat 739.878 kb on - strandat 739.878 kb on - strandat 739.951 kb on + strandat 739.951 kb on + strandat 739.965 kb on - strandat 739.965 kb on - strandat 740.000 kb on + strand, within HUW76_03710at 740.019 kb on + strand, within HUW76_03710at 740.019 kb on + strand, within HUW76_03710at 740.027 kb on - strand, within HUW76_03710at 740.027 kb on - strand, within HUW76_03710at 740.027 kb on - strand, within HUW76_03710at 740.031 kb on + strand, within HUW76_03710at 740.031 kb on + strand, within HUW76_03710at 740.039 kb on - strand, within HUW76_03710at 740.039 kb on - strand, within HUW76_03710at 740.130 kb on - strand, within HUW76_03710at 740.130 kb on - strand, within HUW76_03710at 740.137 kb on + strand, within HUW76_03710at 740.144 kb on - strand, within HUW76_03710at 740.145 kb on - strand, within HUW76_03710at 740.145 kb on - strand, within HUW76_03710at 740.286 kb on - strand, within HUW76_03710at 740.286 kb on - strand, within HUW76_03710at 740.389 kb on + strand, within HUW76_03710at 740.405 kb on - strand, within HUW76_03710at 740.405 kb on - strand, within HUW76_03710at 740.447 kb on + strand, within HUW76_03710at 740.455 kb on - strand, within HUW76_03710at 740.553 kb on + strand, within HUW76_03710at 740.553 kb on + strand, within HUW76_03710at 740.560 kb on - strand, within HUW76_03710at 740.562 kb on - strand, within HUW76_03710at 740.562 kb on - strand, within HUW76_03710at 740.573 kb on + strand, within HUW76_03710at 740.650 kb on - strand, within HUW76_03710at 740.652 kb on + strand, within HUW76_03710at 740.652 kb on + strand, within HUW76_03710at 740.652 kb on - strand, within HUW76_03710at 740.652 kb on - strand, within HUW76_03710at 740.694 kb on - strand, within HUW76_03710at 740.694 kb on - strand, within HUW76_03710at 740.694 kb on - strand, within HUW76_03710at 740.694 kb on - strand, within HUW76_03710

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M3_D3
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738,240 - HUW76_03695 0.44 +2.2
738,273 - HUW76_03695 0.61 +2.1
738,326 - HUW76_03695 0.88 +2.3
738,326 - HUW76_03695 0.88 +2.4
738,336 - +2.5
738,385 + +0.5
738,385 - -0.8
738,385 - -0.7
738,475 + +1.2
738,475 + -0.4
738,477 - -0.7
738,477 - -0.5
738,480 + +1.3
738,480 + +0.7
738,480 + +1.0
738,480 + +0.1
738,480 + +0.8
738,483 - +0.4
738,488 - +1.6
738,488 - +0.6
738,489 + +0.3
738,489 + +2.4
738,593 - HUW76_03700 0.21 -0.4
738,593 - HUW76_03700 0.21 -0.8
738,659 + HUW76_03700 0.29 +1.1
738,659 + HUW76_03700 0.29 +2.7
738,659 + HUW76_03700 0.29 +1.3
738,659 + HUW76_03700 0.29 +1.9
738,659 + HUW76_03700 0.29 +0.3
738,659 + HUW76_03700 0.29 +2.3
738,659 + HUW76_03700 0.29 +2.0
738,659 + HUW76_03700 0.29 -0.1
738,659 + HUW76_03700 0.29 +0.5
738,667 - HUW76_03700 0.30 +0.2
738,667 - HUW76_03700 0.30 -2.0
738,667 - HUW76_03700 0.30 +1.1
738,667 - HUW76_03700 0.30 -0.5
738,667 - HUW76_03700 0.30 -0.6
738,750 - HUW76_03700 0.41 -0.4
738,750 - HUW76_03700 0.41 +1.1
738,806 - HUW76_03700 0.48 -0.4
738,817 - HUW76_03700 0.49 +0.1
738,817 - HUW76_03700 0.49 +0.3
738,881 + HUW76_03700 0.57 +0.0
738,881 + HUW76_03700 0.57 -0.4
738,881 + HUW76_03700 0.57 +0.0
738,889 - HUW76_03700 0.58 -0.0
739,258 + -0.8
739,258 + +0.3
739,258 + +0.9
739,258 + +0.9
739,258 + +0.2
739,258 + +0.3
739,266 - +0.1
739,266 - +0.1
739,381 + HUW76_03705 0.26 +0.4
739,413 + HUW76_03705 0.31 +0.4
739,428 + HUW76_03705 0.33 +1.1
739,428 + HUW76_03705 0.33 +0.5
739,436 - HUW76_03705 0.35 -0.8
739,456 - HUW76_03705 0.38 -0.3
739,477 - HUW76_03705 0.41 -2.7
739,477 - HUW76_03705 0.41 +0.1
739,601 - HUW76_03705 0.62 +1.1
739,721 - HUW76_03705 0.82 -0.3
739,721 - HUW76_03705 0.82 +0.5
739,828 + +1.4
739,833 + +3.2
739,878 - -0.2
739,878 - +0.8
739,951 + +0.5
739,951 + -1.8
739,965 - -2.9
739,965 - -0.9
740,000 + HUW76_03710 0.10 +0.4
740,019 + HUW76_03710 0.11 +1.0
740,019 + HUW76_03710 0.11 +0.6
740,027 - HUW76_03710 0.12 -1.3
740,027 - HUW76_03710 0.12 -0.1
740,027 - HUW76_03710 0.12 -1.7
740,031 + HUW76_03710 0.12 +1.6
740,031 + HUW76_03710 0.12 +0.2
740,039 - HUW76_03710 0.12 -1.1
740,039 - HUW76_03710 0.12 -0.4
740,130 - HUW76_03710 0.18 +0.1
740,130 - HUW76_03710 0.18 -1.3
740,137 + HUW76_03710 0.18 +0.5
740,144 - HUW76_03710 0.18 -2.4
740,145 - HUW76_03710 0.19 +0.6
740,145 - HUW76_03710 0.19 -2.2
740,286 - HUW76_03710 0.27 -1.7
740,286 - HUW76_03710 0.27 -1.7
740,389 + HUW76_03710 0.33 -1.9
740,405 - HUW76_03710 0.34 -2.9
740,405 - HUW76_03710 0.34 -1.4
740,447 + HUW76_03710 0.36 +0.4
740,455 - HUW76_03710 0.37 -1.4
740,553 + HUW76_03710 0.43 +1.3
740,553 + HUW76_03710 0.43 -0.1
740,560 - HUW76_03710 0.43 -1.5
740,562 - HUW76_03710 0.43 +0.2
740,562 - HUW76_03710 0.43 -1.3
740,573 + HUW76_03710 0.44 -0.8
740,650 - HUW76_03710 0.48 -1.2
740,652 + HUW76_03710 0.48 +0.9
740,652 + HUW76_03710 0.48 -0.6
740,652 - HUW76_03710 0.48 +0.7
740,652 - HUW76_03710 0.48 -0.3
740,694 - HUW76_03710 0.51 -0.9
740,694 - HUW76_03710 0.51 -1.9
740,694 - HUW76_03710 0.51 -0.4
740,694 - HUW76_03710 0.51 -1.4

Or see this region's nucleotide sequence