Experiment: G1M3_D3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_03530 and HUW76_03535 overlap by 8 nucleotides HUW76_03535 and HUW76_03540 are separated by 54 nucleotides HUW76_03540 and HUW76_03545 overlap by 1 nucleotides HUW76_03545 and HUW76_03550 are separated by 314 nucleotides
HUW76_03530: HUW76_03530 - ABC transporter ATP-binding protein, at 708,874 to 709,881
_03530
HUW76_03535: HUW76_03535 - ATP-binding cassette domain-containing protein, at 709,874 to 710,848
_03535
HUW76_03540: HUW76_03540 - Txe/YoeB family addiction module toxin, at 710,903 to 711,169
_03540
HUW76_03545: HUW76_03545 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 711,169 to 711,435
_03545
HUW76_03550: HUW76_03550 - hypothetical protein, at 711,750 to 712,226
_03550
Position (kb) 709
710
711 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 708.920 kb on + strand at 708.920 kb on + strand at 708.938 kb on - strand at 708.967 kb on + strand at 708.967 kb on + strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.979 kb on + strand, within HUW76_03530 at 708.979 kb on + strand, within HUW76_03530 at 708.986 kb on + strand, within HUW76_03530 at 708.994 kb on - strand, within HUW76_03530 at 708.994 kb on - strand, within HUW76_03530 at 709.005 kb on + strand, within HUW76_03530 at 709.005 kb on + strand, within HUW76_03530 at 709.186 kb on + strand, within HUW76_03530 at 709.186 kb on + strand, within HUW76_03530 at 709.196 kb on - strand, within HUW76_03530 at 709.220 kb on + strand, within HUW76_03530 at 709.269 kb on + strand, within HUW76_03530 at 709.269 kb on + strand, within HUW76_03530 at 709.269 kb on + strand, within HUW76_03530 at 709.269 kb on + strand, within HUW76_03530 at 709.269 kb on + strand, within HUW76_03530 at 709.269 kb on + strand, within HUW76_03530 at 709.277 kb on - strand, within HUW76_03530 at 709.277 kb on - strand, within HUW76_03530 at 709.277 kb on - strand, within HUW76_03530 at 709.277 kb on - strand, within HUW76_03530 at 709.416 kb on + strand, within HUW76_03530 at 709.416 kb on + strand, within HUW76_03530 at 709.416 kb on + strand, within HUW76_03530 at 709.416 kb on + strand, within HUW76_03530 at 709.416 kb on + strand, within HUW76_03530 at 709.416 kb on + strand, within HUW76_03530 at 709.424 kb on - strand, within HUW76_03530 at 709.424 kb on - strand, within HUW76_03530 at 709.427 kb on + strand, within HUW76_03530 at 709.427 kb on + strand, within HUW76_03530 at 709.610 kb on + strand, within HUW76_03530 at 709.620 kb on + strand, within HUW76_03530 at 709.620 kb on + strand, within HUW76_03530 at 709.620 kb on + strand, within HUW76_03530 at 709.620 kb on + strand, within HUW76_03530 at 709.620 kb on + strand, within HUW76_03530 at 709.620 kb on + strand, within HUW76_03530 at 709.620 kb on + strand, within HUW76_03530 at 709.628 kb on - strand, within HUW76_03530 at 709.671 kb on + strand, within HUW76_03530 at 709.671 kb on + strand, within HUW76_03530 at 709.695 kb on + strand, within HUW76_03530 at 709.703 kb on - strand, within HUW76_03530 at 709.703 kb on - strand, within HUW76_03530 at 709.749 kb on + strand, within HUW76_03530 at 709.749 kb on + strand, within HUW76_03530 at 709.757 kb on + strand, within HUW76_03530 at 709.759 kb on + strand, within HUW76_03530 at 709.759 kb on + strand, within HUW76_03530 at 709.762 kb on + strand, within HUW76_03530 at 709.762 kb on + strand, within HUW76_03530 at 709.765 kb on - strand, within HUW76_03530 at 709.765 kb on - strand, within HUW76_03530 at 709.770 kb on - strand, within HUW76_03530 at 709.772 kb on - strand, within HUW76_03530 at 709.831 kb on + strand at 709.831 kb on + strand at 709.831 kb on + strand at 709.831 kb on + strand at 709.832 kb on - strand at 709.839 kb on - strand at 709.886 kb on - strand at 709.892 kb on - strand at 709.892 kb on - strand at 709.975 kb on + strand, within HUW76_03535 at 709.975 kb on + strand, within HUW76_03535 at 709.975 kb on + strand, within HUW76_03535 at 709.975 kb on + strand, within HUW76_03535 at 709.975 kb on + strand, within HUW76_03535 at 709.981 kb on + strand, within HUW76_03535 at 709.981 kb on + strand, within HUW76_03535 at 709.983 kb on - strand, within HUW76_03535 at 709.983 kb on - strand, within HUW76_03535 at 709.983 kb on - strand, within HUW76_03535 at 709.983 kb on - strand, within HUW76_03535 at 709.983 kb on - strand, within HUW76_03535 at 709.983 kb on - strand, within HUW76_03535 at 709.983 kb on - strand, within HUW76_03535 at 710.256 kb on + strand, within HUW76_03535 at 710.264 kb on + strand, within HUW76_03535 at 710.264 kb on - strand, within HUW76_03535 at 710.264 kb on - strand, within HUW76_03535 at 710.264 kb on - strand, within HUW76_03535 at 710.277 kb on + strand, within HUW76_03535 at 710.288 kb on + strand, within HUW76_03535 at 710.288 kb on + strand, within HUW76_03535 at 710.305 kb on + strand, within HUW76_03535 at 710.305 kb on + strand, within HUW76_03535 at 710.368 kb on - strand, within HUW76_03535 at 710.387 kb on - strand, within HUW76_03535 at 710.387 kb on - strand, within HUW76_03535 at 710.409 kb on + strand, within HUW76_03535 at 710.409 kb on + strand, within HUW76_03535 at 710.409 kb on + strand, within HUW76_03535 at 710.409 kb on + strand, within HUW76_03535 at 710.409 kb on + strand, within HUW76_03535 at 710.417 kb on - strand, within HUW76_03535 at 710.417 kb on - strand, within HUW76_03535 at 710.417 kb on - strand, within HUW76_03535 at 710.419 kb on + strand, within HUW76_03535 at 710.477 kb on + strand, within HUW76_03535 at 710.485 kb on + strand, within HUW76_03535 at 710.485 kb on - strand, within HUW76_03535 at 710.537 kb on - strand, within HUW76_03535 at 710.550 kb on - strand, within HUW76_03535 at 710.602 kb on + strand, within HUW76_03535 at 710.602 kb on + strand, within HUW76_03535 at 710.602 kb on + strand, within HUW76_03535 at 710.602 kb on + strand, within HUW76_03535 at 710.622 kb on - strand, within HUW76_03535 at 710.622 kb on - strand, within HUW76_03535 at 710.625 kb on + strand, within HUW76_03535 at 710.628 kb on - strand, within HUW76_03535 at 710.664 kb on + strand, within HUW76_03535 at 710.672 kb on - strand, within HUW76_03535 at 710.672 kb on - strand, within HUW76_03535 at 710.738 kb on - strand, within HUW76_03535 at 710.790 kb on - strand at 710.809 kb on + strand at 710.922 kb on + strand at 710.922 kb on + strand at 710.922 kb on + strand at 710.922 kb on + strand at 710.938 kb on - strand, within HUW76_03540 at 710.978 kb on - strand, within HUW76_03540 at 710.978 kb on - strand, within HUW76_03540 at 710.999 kb on + strand, within HUW76_03540 at 711.004 kb on - strand, within HUW76_03540 at 711.007 kb on - strand, within HUW76_03540 at 711.007 kb on - strand, within HUW76_03540 at 711.007 kb on - strand, within HUW76_03540 at 711.033 kb on + strand, within HUW76_03540 at 711.045 kb on - strand, within HUW76_03540 at 711.047 kb on + strand, within HUW76_03540 at 711.102 kb on - strand, within HUW76_03540 at 711.102 kb on - strand, within HUW76_03540 at 711.104 kb on + strand, within HUW76_03540 at 711.104 kb on + strand, within HUW76_03540 at 711.104 kb on + strand, within HUW76_03540 at 711.104 kb on + strand, within HUW76_03540 at 711.138 kb on + strand, within HUW76_03540 at 711.138 kb on + strand, within HUW76_03540 at 711.172 kb on + strand at 711.172 kb on + strand at 711.189 kb on - strand at 711.241 kb on + strand, within HUW76_03545 at 711.241 kb on + strand, within HUW76_03545 at 711.269 kb on - strand, within HUW76_03545 at 711.283 kb on - strand, within HUW76_03545 at 711.283 kb on - strand, within HUW76_03545 at 711.290 kb on + strand, within HUW76_03545 at 711.358 kb on + strand, within HUW76_03545 at 711.493 kb on + strand at 711.501 kb on - strand at 711.501 kb on - strand at 711.583 kb on - strand at 711.587 kb on + strand at 711.664 kb on + strand at 711.664 kb on + strand at 711.672 kb on - strand at 711.719 kb on - strand at 711.719 kb on - strand at 711.779 kb on - strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.791 kb on + strand at 711.791 kb on + strand at 711.791 kb on + strand at 711.791 kb on + strand at 711.799 kb on - strand, within HUW76_03550 at 711.799 kb on - strand, within HUW76_03550 at 711.805 kb on + strand, within HUW76_03550 at 711.805 kb on + strand, within HUW76_03550 at 711.813 kb on - strand, within HUW76_03550 at 711.813 kb on - strand, within HUW76_03550 at 711.813 kb on - strand, within HUW76_03550
Per-strain Table
Position Strand Gene LocusTag Fraction G1M3_D3 remove 708,920 + -1.2 708,920 + -1.8 708,938 - -1.1 708,967 + -1.5 708,967 + -1.2 708,974 - +0.7 708,974 - -2.0 708,979 + HUW76_03530 0.10 -2.1 708,979 + HUW76_03530 0.10 -1.9 708,986 + HUW76_03530 0.11 -1.3 708,994 - HUW76_03530 0.12 +0.5 708,994 - HUW76_03530 0.12 +1.1 709,005 + HUW76_03530 0.13 -0.7 709,005 + HUW76_03530 0.13 +0.6 709,186 + HUW76_03530 0.31 -3.0 709,186 + HUW76_03530 0.31 -1.7 709,196 - HUW76_03530 0.32 +0.4 709,220 + HUW76_03530 0.34 -0.3 709,269 + HUW76_03530 0.39 -0.8 709,269 + HUW76_03530 0.39 -2.6 709,269 + HUW76_03530 0.39 -1.6 709,269 + HUW76_03530 0.39 -1.3 709,269 + HUW76_03530 0.39 -1.4 709,269 + HUW76_03530 0.39 -0.4 709,277 - HUW76_03530 0.40 -2.3 709,277 - HUW76_03530 0.40 -2.5 709,277 - HUW76_03530 0.40 -3.5 709,277 - HUW76_03530 0.40 +1.2 709,416 + HUW76_03530 0.54 -2.7 709,416 + HUW76_03530 0.54 -1.9 709,416 + HUW76_03530 0.54 -2.0 709,416 + HUW76_03530 0.54 +0.3 709,416 + HUW76_03530 0.54 -1.0 709,416 + HUW76_03530 0.54 -1.0 709,424 - HUW76_03530 0.55 +0.6 709,424 - HUW76_03530 0.55 -0.5 709,427 + HUW76_03530 0.55 -2.0 709,427 + HUW76_03530 0.55 -1.2 709,610 + HUW76_03530 0.73 -2.3 709,620 + HUW76_03530 0.74 +0.9 709,620 + HUW76_03530 0.74 -0.2 709,620 + HUW76_03530 0.74 -1.0 709,620 + HUW76_03530 0.74 -1.8 709,620 + HUW76_03530 0.74 +0.4 709,620 + HUW76_03530 0.74 +0.6 709,620 + HUW76_03530 0.74 -1.1 709,628 - HUW76_03530 0.75 -1.3 709,671 + HUW76_03530 0.79 -0.5 709,671 + HUW76_03530 0.79 -0.5 709,695 + HUW76_03530 0.81 -1.0 709,703 - HUW76_03530 0.82 -3.3 709,703 - HUW76_03530 0.82 -0.5 709,749 + HUW76_03530 0.87 -0.5 709,749 + HUW76_03530 0.87 -2.5 709,757 + HUW76_03530 0.88 -2.0 709,759 + HUW76_03530 0.88 -0.6 709,759 + HUW76_03530 0.88 -2.9 709,762 + HUW76_03530 0.88 -0.8 709,762 + HUW76_03530 0.88 -0.7 709,765 - HUW76_03530 0.88 -1.5 709,765 - HUW76_03530 0.88 -1.0 709,770 - HUW76_03530 0.89 -2.0 709,772 - HUW76_03530 0.89 -2.9 709,831 + -0.8 709,831 + +1.1 709,831 + -0.4 709,831 + -0.4 709,832 - +0.1 709,839 - -1.6 709,886 - -3.3 709,892 - -2.2 709,892 - -0.3 709,975 + HUW76_03535 0.10 +0.1 709,975 + HUW76_03535 0.10 -0.6 709,975 + HUW76_03535 0.10 -0.2 709,975 + HUW76_03535 0.10 -1.1 709,975 + HUW76_03535 0.10 -2.2 709,981 + HUW76_03535 0.11 -2.2 709,981 + HUW76_03535 0.11 -1.1 709,983 - HUW76_03535 0.11 -1.0 709,983 - HUW76_03535 0.11 -0.4 709,983 - HUW76_03535 0.11 -3.1 709,983 - HUW76_03535 0.11 -2.3 709,983 - HUW76_03535 0.11 +0.4 709,983 - HUW76_03535 0.11 +1.1 709,983 - HUW76_03535 0.11 +0.2 710,256 + HUW76_03535 0.39 -0.2 710,264 + HUW76_03535 0.40 -1.6 710,264 - HUW76_03535 0.40 -1.2 710,264 - HUW76_03535 0.40 +0.4 710,264 - HUW76_03535 0.40 -2.5 710,277 + HUW76_03535 0.41 -0.7 710,288 + HUW76_03535 0.42 -2.1 710,288 + HUW76_03535 0.42 -0.3 710,305 + HUW76_03535 0.44 -1.3 710,305 + HUW76_03535 0.44 -0.9 710,368 - HUW76_03535 0.51 -2.8 710,387 - HUW76_03535 0.53 -1.5 710,387 - HUW76_03535 0.53 -0.6 710,409 + HUW76_03535 0.55 -1.0 710,409 + HUW76_03535 0.55 -1.6 710,409 + HUW76_03535 0.55 -2.7 710,409 + HUW76_03535 0.55 -0.8 710,409 + HUW76_03535 0.55 -2.2 710,417 - HUW76_03535 0.56 -1.1 710,417 - HUW76_03535 0.56 -1.2 710,417 - HUW76_03535 0.56 +2.2 710,419 + HUW76_03535 0.56 -0.4 710,477 + HUW76_03535 0.62 -3.0 710,485 + HUW76_03535 0.63 -0.3 710,485 - HUW76_03535 0.63 +2.2 710,537 - HUW76_03535 0.68 +0.3 710,550 - HUW76_03535 0.69 -3.1 710,602 + HUW76_03535 0.75 -2.8 710,602 + HUW76_03535 0.75 -1.4 710,602 + HUW76_03535 0.75 -1.3 710,602 + HUW76_03535 0.75 -3.2 710,622 - HUW76_03535 0.77 -1.6 710,622 - HUW76_03535 0.77 -0.2 710,625 + HUW76_03535 0.77 -1.9 710,628 - HUW76_03535 0.77 -1.0 710,664 + HUW76_03535 0.81 -0.5 710,672 - HUW76_03535 0.82 -2.1 710,672 - HUW76_03535 0.82 -0.1 710,738 - HUW76_03535 0.89 +0.4 710,790 - -1.4 710,809 + +0.6 710,922 + -0.0 710,922 + +1.3 710,922 + +0.4 710,922 + +1.1 710,938 - HUW76_03540 0.13 +0.1 710,978 - HUW76_03540 0.28 -0.1 710,978 - HUW76_03540 0.28 -0.7 710,999 + HUW76_03540 0.36 -2.3 711,004 - HUW76_03540 0.38 +0.6 711,007 - HUW76_03540 0.39 -0.4 711,007 - HUW76_03540 0.39 +0.3 711,007 - HUW76_03540 0.39 +0.1 711,033 + HUW76_03540 0.49 -0.1 711,045 - HUW76_03540 0.53 -1.1 711,047 + HUW76_03540 0.54 -0.2 711,102 - HUW76_03540 0.75 +0.5 711,102 - HUW76_03540 0.75 +0.1 711,104 + HUW76_03540 0.75 -2.1 711,104 + HUW76_03540 0.75 -0.3 711,104 + HUW76_03540 0.75 -1.0 711,104 + HUW76_03540 0.75 -0.8 711,138 + HUW76_03540 0.88 +1.5 711,138 + HUW76_03540 0.88 +0.2 711,172 + +1.7 711,172 + -1.3 711,189 - +1.4 711,241 + HUW76_03545 0.27 +1.0 711,241 + HUW76_03545 0.27 -2.1 711,269 - HUW76_03545 0.37 -1.0 711,283 - HUW76_03545 0.43 -0.1 711,283 - HUW76_03545 0.43 +0.8 711,290 + HUW76_03545 0.45 -1.5 711,358 + HUW76_03545 0.71 -0.3 711,493 + +0.4 711,501 - -1.1 711,501 - -1.0 711,583 - -1.1 711,587 + -0.2 711,664 + -0.2 711,664 + +0.1 711,672 - +0.1 711,719 - -0.5 711,719 - +0.2 711,779 - -0.6 711,781 + +0.4 711,781 + -0.6 711,781 + +0.3 711,781 + -1.2 711,781 + -0.0 711,781 + -2.1 711,781 + -1.7 711,781 + +0.3 711,781 + -1.2 711,781 + -2.0 711,781 + +0.8 711,781 + +0.5 711,781 + +0.2 711,781 + -0.0 711,781 + -0.2 711,781 + +1.1 711,781 + +1.2 711,781 + +0.8 711,781 + +0.0 711,781 + +0.2 711,781 + -1.2 711,781 + +0.5 711,781 + -0.0 711,781 + -0.3 711,781 + +0.7 711,781 + -0.1 711,781 + +2.7 711,781 + +0.7 711,781 + +1.1 711,789 - -0.8 711,789 - +0.2 711,789 - +0.9 711,789 - +0.6 711,789 - +0.8 711,789 - -2.4 711,789 - +0.8 711,789 - -0.1 711,789 - +1.2 711,789 - +0.6 711,789 - +0.3 711,789 - +0.1 711,789 - +1.9 711,789 - -0.3 711,791 + +1.0 711,791 + -0.1 711,791 + +0.0 711,791 + +1.4 711,799 - HUW76_03550 0.10 +0.1 711,799 - HUW76_03550 0.10 -0.4 711,805 + HUW76_03550 0.12 +0.6 711,805 + HUW76_03550 0.12 +0.7 711,813 - HUW76_03550 0.13 -0.2 711,813 - HUW76_03550 0.13 +0.4 711,813 - HUW76_03550 0.13 -0.9
Or see this region's nucleotide sequence