Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01965

Experiment: G1M3_D3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01960 and HUW76_01965 are separated by 119 nucleotidesHUW76_01965 and HUW76_01970 are separated by 18 nucleotidesHUW76_01970 and HUW76_01975 are separated by 170 nucleotides HUW76_01960: HUW76_01960 - dihydroxyacetone kinase subunit DhaK, at 388,402 to 389,388 _01960 HUW76_01965: HUW76_01965 - glycerol kinase GlpK, at 389,508 to 391,001 _01965 HUW76_01970: HUW76_01970 - aquaporin family protein, at 391,020 to 391,751 _01970 HUW76_01975: HUW76_01975 - aldehyde dehydrogenase EutE, at 391,922 to 393,319 _01975 Position (kb) 389 390 391 392Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 388.658 kb on + strand, within HUW76_01960at 388.659 kb on - strand, within HUW76_01960at 388.659 kb on - strand, within HUW76_01960at 388.666 kb on - strand, within HUW76_01960at 388.729 kb on - strand, within HUW76_01960at 388.729 kb on - strand, within HUW76_01960at 388.729 kb on - strand, within HUW76_01960at 388.805 kb on + strand, within HUW76_01960at 388.813 kb on - strand, within HUW76_01960at 388.813 kb on - strand, within HUW76_01960at 388.813 kb on - strand, within HUW76_01960at 388.813 kb on - strand, within HUW76_01960at 388.813 kb on - strand, within HUW76_01960at 388.820 kb on - strand, within HUW76_01960at 388.859 kb on - strand, within HUW76_01960at 388.874 kb on - strand, within HUW76_01960at 388.874 kb on - strand, within HUW76_01960at 388.879 kb on - strand, within HUW76_01960at 388.879 kb on - strand, within HUW76_01960at 388.881 kb on + strand, within HUW76_01960at 388.948 kb on + strand, within HUW76_01960at 388.972 kb on - strand, within HUW76_01960at 389.012 kb on + strand, within HUW76_01960at 389.056 kb on + strand, within HUW76_01960at 389.122 kb on - strand, within HUW76_01960at 389.141 kb on + strand, within HUW76_01960at 389.149 kb on - strand, within HUW76_01960at 389.150 kb on + strand, within HUW76_01960at 389.214 kb on - strand, within HUW76_01960at 389.224 kb on - strand, within HUW76_01960at 389.224 kb on - strand, within HUW76_01960at 389.232 kb on + strand, within HUW76_01960at 389.232 kb on + strand, within HUW76_01960at 389.240 kb on - strand, within HUW76_01960at 389.240 kb on - strand, within HUW76_01960at 389.289 kb on - strand, within HUW76_01960at 389.303 kb on + strandat 389.303 kb on + strandat 389.332 kb on - strandat 389.332 kb on - strandat 389.406 kb on - strandat 389.489 kb on - strandat 389.489 kb on - strandat 389.539 kb on + strandat 389.539 kb on + strandat 389.547 kb on - strandat 389.547 kb on - strandat 389.547 kb on - strandat 389.547 kb on - strandat 389.702 kb on + strand, within HUW76_01965at 389.725 kb on + strand, within HUW76_01965at 389.791 kb on - strand, within HUW76_01965at 389.791 kb on - strand, within HUW76_01965at 389.826 kb on - strand, within HUW76_01965at 389.826 kb on - strand, within HUW76_01965at 389.826 kb on - strand, within HUW76_01965at 389.867 kb on - strand, within HUW76_01965at 389.920 kb on + strand, within HUW76_01965at 389.925 kb on + strand, within HUW76_01965at 389.925 kb on + strand, within HUW76_01965at 389.925 kb on + strand, within HUW76_01965at 389.925 kb on + strand, within HUW76_01965at 389.933 kb on - strand, within HUW76_01965at 389.933 kb on - strand, within HUW76_01965at 389.933 kb on - strand, within HUW76_01965at 389.933 kb on - strand, within HUW76_01965at 389.989 kb on - strand, within HUW76_01965at 390.022 kb on + strand, within HUW76_01965at 390.030 kb on - strand, within HUW76_01965at 390.060 kb on - strand, within HUW76_01965at 390.060 kb on - strand, within HUW76_01965at 390.060 kb on - strand, within HUW76_01965at 390.060 kb on - strand, within HUW76_01965at 390.068 kb on - strand, within HUW76_01965at 390.068 kb on - strand, within HUW76_01965at 390.068 kb on - strand, within HUW76_01965at 390.068 kb on - strand, within HUW76_01965at 390.147 kb on - strand, within HUW76_01965at 390.157 kb on - strand, within HUW76_01965at 390.157 kb on - strand, within HUW76_01965at 390.157 kb on - strand, within HUW76_01965at 390.157 kb on - strand, within HUW76_01965at 390.171 kb on + strand, within HUW76_01965at 390.171 kb on + strand, within HUW76_01965at 390.178 kb on + strand, within HUW76_01965at 390.189 kb on - strand, within HUW76_01965at 390.195 kb on + strand, within HUW76_01965at 390.217 kb on + strand, within HUW76_01965at 390.264 kb on + strand, within HUW76_01965at 390.376 kb on + strand, within HUW76_01965at 390.434 kb on + strand, within HUW76_01965at 390.442 kb on - strand, within HUW76_01965at 390.442 kb on - strand, within HUW76_01965at 390.447 kb on - strand, within HUW76_01965at 390.448 kb on + strand, within HUW76_01965at 390.461 kb on - strand, within HUW76_01965at 390.469 kb on - strand, within HUW76_01965at 390.469 kb on - strand, within HUW76_01965at 390.556 kb on - strand, within HUW76_01965at 390.556 kb on - strand, within HUW76_01965at 390.617 kb on + strand, within HUW76_01965at 390.617 kb on + strand, within HUW76_01965at 390.617 kb on + strand, within HUW76_01965at 390.630 kb on - strand, within HUW76_01965at 390.630 kb on - strand, within HUW76_01965at 390.630 kb on - strand, within HUW76_01965at 390.630 kb on - strand, within HUW76_01965at 390.630 kb on - strand, within HUW76_01965at 390.630 kb on - strand, within HUW76_01965at 390.630 kb on - strand, within HUW76_01965at 390.694 kb on - strand, within HUW76_01965at 390.694 kb on - strand, within HUW76_01965at 390.704 kb on + strand, within HUW76_01965at 390.704 kb on + strand, within HUW76_01965at 390.712 kb on - strand, within HUW76_01965at 390.722 kb on - strand, within HUW76_01965at 390.722 kb on - strand, within HUW76_01965at 390.722 kb on - strand, within HUW76_01965at 390.754 kb on - strand, within HUW76_01965at 390.809 kb on - strand, within HUW76_01965at 390.809 kb on - strand, within HUW76_01965at 390.857 kb on + strandat 390.857 kb on + strandat 390.864 kb on + strandat 390.872 kb on - strandat 390.872 kb on - strandat 390.872 kb on - strandat 390.877 kb on - strandat 390.877 kb on - strandat 390.880 kb on - strandat 390.880 kb on - strandat 390.927 kb on - strandat 390.927 kb on - strandat 390.967 kb on + strandat 390.967 kb on + strandat 390.967 kb on + strandat 390.967 kb on + strandat 390.972 kb on + strandat 390.972 kb on + strandat 390.977 kb on + strandat 390.985 kb on - strandat 390.985 kb on - strandat 391.047 kb on + strandat 391.055 kb on - strandat 391.055 kb on - strandat 391.055 kb on - strandat 391.055 kb on - strandat 391.122 kb on + strand, within HUW76_01970at 391.123 kb on + strand, within HUW76_01970at 391.123 kb on + strand, within HUW76_01970at 391.131 kb on - strand, within HUW76_01970at 391.131 kb on - strand, within HUW76_01970at 391.131 kb on - strand, within HUW76_01970at 391.150 kb on - strand, within HUW76_01970at 391.150 kb on - strand, within HUW76_01970at 391.163 kb on + strand, within HUW76_01970at 391.188 kb on - strand, within HUW76_01970at 391.188 kb on - strand, within HUW76_01970at 391.210 kb on + strand, within HUW76_01970at 391.227 kb on - strand, within HUW76_01970at 391.227 kb on - strand, within HUW76_01970at 391.255 kb on + strand, within HUW76_01970at 391.295 kb on + strand, within HUW76_01970at 391.304 kb on - strand, within HUW76_01970at 391.360 kb on - strand, within HUW76_01970at 391.383 kb on - strand, within HUW76_01970at 391.383 kb on - strand, within HUW76_01970at 391.393 kb on - strand, within HUW76_01970at 391.410 kb on - strand, within HUW76_01970at 391.419 kb on + strand, within HUW76_01970at 391.427 kb on - strand, within HUW76_01970at 391.443 kb on + strand, within HUW76_01970at 391.443 kb on + strand, within HUW76_01970at 391.451 kb on - strand, within HUW76_01970at 391.473 kb on + strand, within HUW76_01970at 391.476 kb on - strand, within HUW76_01970at 391.476 kb on - strand, within HUW76_01970at 391.533 kb on + strand, within HUW76_01970at 391.547 kb on - strand, within HUW76_01970at 391.559 kb on + strand, within HUW76_01970at 391.567 kb on - strand, within HUW76_01970at 391.569 kb on + strand, within HUW76_01970at 391.569 kb on + strand, within HUW76_01970at 391.583 kb on + strand, within HUW76_01970at 391.593 kb on + strand, within HUW76_01970at 391.593 kb on + strand, within HUW76_01970at 391.629 kb on + strand, within HUW76_01970at 391.629 kb on + strand, within HUW76_01970at 391.635 kb on + strand, within HUW76_01970at 391.635 kb on + strand, within HUW76_01970at 391.635 kb on + strand, within HUW76_01970at 391.643 kb on - strand, within HUW76_01970at 391.649 kb on - strand, within HUW76_01970at 391.658 kb on + strand, within HUW76_01970at 391.666 kb on - strand, within HUW76_01970at 391.666 kb on - strand, within HUW76_01970at 391.690 kb on + strandat 391.744 kb on - strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.956 kb on - strandat 391.982 kb on - strandat 391.984 kb on + strandat 391.984 kb on + strandat 391.990 kb on + strandat 391.991 kb on + strandat 391.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M3_D3
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388,658 + HUW76_01960 0.26 -0.8
388,659 - HUW76_01960 0.26 +1.1
388,659 - HUW76_01960 0.26 -0.6
388,666 - HUW76_01960 0.27 -0.4
388,729 - HUW76_01960 0.33 +0.7
388,729 - HUW76_01960 0.33 +0.1
388,729 - HUW76_01960 0.33 +0.4
388,805 + HUW76_01960 0.41 +0.6
388,813 - HUW76_01960 0.42 -1.1
388,813 - HUW76_01960 0.42 +0.2
388,813 - HUW76_01960 0.42 +0.4
388,813 - HUW76_01960 0.42 -0.0
388,813 - HUW76_01960 0.42 +1.3
388,820 - HUW76_01960 0.42 -0.7
388,859 - HUW76_01960 0.46 +0.5
388,874 - HUW76_01960 0.48 +0.1
388,874 - HUW76_01960 0.48 +0.2
388,879 - HUW76_01960 0.48 +0.6
388,879 - HUW76_01960 0.48 -0.4
388,881 + HUW76_01960 0.49 -0.9
388,948 + HUW76_01960 0.55 +0.8
388,972 - HUW76_01960 0.58 -0.7
389,012 + HUW76_01960 0.62 +0.3
389,056 + HUW76_01960 0.66 +0.2
389,122 - HUW76_01960 0.73 -0.3
389,141 + HUW76_01960 0.75 +0.7
389,149 - HUW76_01960 0.76 -0.1
389,150 + HUW76_01960 0.76 +1.3
389,214 - HUW76_01960 0.82 -0.3
389,224 - HUW76_01960 0.83 +0.7
389,224 - HUW76_01960 0.83 -0.3
389,232 + HUW76_01960 0.84 +1.2
389,232 + HUW76_01960 0.84 +1.8
389,240 - HUW76_01960 0.85 +1.0
389,240 - HUW76_01960 0.85 +1.8
389,289 - HUW76_01960 0.90 +0.3
389,303 + +0.1
389,303 + +0.8
389,332 - -0.4
389,332 - -0.2
389,406 - -1.0
389,489 - -0.4
389,489 - -0.8
389,539 + -2.1
389,539 + -0.4
389,547 - +0.1
389,547 - -0.4
389,547 - -0.4
389,547 - +0.3
389,702 + HUW76_01965 0.13 +0.6
389,725 + HUW76_01965 0.15 -1.4
389,791 - HUW76_01965 0.19 -1.6
389,791 - HUW76_01965 0.19 +0.0
389,826 - HUW76_01965 0.21 -0.1
389,826 - HUW76_01965 0.21 +2.6
389,826 - HUW76_01965 0.21 -0.7
389,867 - HUW76_01965 0.24 -1.8
389,920 + HUW76_01965 0.28 -1.7
389,925 + HUW76_01965 0.28 +0.4
389,925 + HUW76_01965 0.28 -0.1
389,925 + HUW76_01965 0.28 -1.0
389,925 + HUW76_01965 0.28 +0.8
389,933 - HUW76_01965 0.28 -0.3
389,933 - HUW76_01965 0.28 -1.4
389,933 - HUW76_01965 0.28 -1.0
389,933 - HUW76_01965 0.28 +0.7
389,989 - HUW76_01965 0.32 -1.5
390,022 + HUW76_01965 0.34 +0.3
390,030 - HUW76_01965 0.35 -1.2
390,060 - HUW76_01965 0.37 +0.3
390,060 - HUW76_01965 0.37 -0.1
390,060 - HUW76_01965 0.37 -0.3
390,060 - HUW76_01965 0.37 +1.9
390,068 - HUW76_01965 0.37 +0.8
390,068 - HUW76_01965 0.37 -0.8
390,068 - HUW76_01965 0.37 +0.7
390,068 - HUW76_01965 0.37 -0.1
390,147 - HUW76_01965 0.43 -0.3
390,157 - HUW76_01965 0.43 -2.9
390,157 - HUW76_01965 0.43 -1.1
390,157 - HUW76_01965 0.43 -0.3
390,157 - HUW76_01965 0.43 +0.7
390,171 + HUW76_01965 0.44 -1.2
390,171 + HUW76_01965 0.44 -0.6
390,178 + HUW76_01965 0.45 -0.1
390,189 - HUW76_01965 0.46 -0.3
390,195 + HUW76_01965 0.46 -0.7
390,217 + HUW76_01965 0.47 +1.3
390,264 + HUW76_01965 0.51 -3.6
390,376 + HUW76_01965 0.58 -0.7
390,434 + HUW76_01965 0.62 -2.5
390,442 - HUW76_01965 0.63 +0.3
390,442 - HUW76_01965 0.63 -1.8
390,447 - HUW76_01965 0.63 -0.4
390,448 + HUW76_01965 0.63 -0.4
390,461 - HUW76_01965 0.64 -1.4
390,469 - HUW76_01965 0.64 -1.2
390,469 - HUW76_01965 0.64 -0.7
390,556 - HUW76_01965 0.70 +1.2
390,556 - HUW76_01965 0.70 -0.3
390,617 + HUW76_01965 0.74 +0.3
390,617 + HUW76_01965 0.74 +0.2
390,617 + HUW76_01965 0.74 +0.2
390,630 - HUW76_01965 0.75 +0.9
390,630 - HUW76_01965 0.75 +0.1
390,630 - HUW76_01965 0.75 +0.2
390,630 - HUW76_01965 0.75 -3.8
390,630 - HUW76_01965 0.75 -1.2
390,630 - HUW76_01965 0.75 +0.1
390,630 - HUW76_01965 0.75 -0.2
390,694 - HUW76_01965 0.79 -0.1
390,694 - HUW76_01965 0.79 -0.7
390,704 + HUW76_01965 0.80 -0.5
390,704 + HUW76_01965 0.80 -2.9
390,712 - HUW76_01965 0.81 -0.1
390,722 - HUW76_01965 0.81 -0.2
390,722 - HUW76_01965 0.81 -0.3
390,722 - HUW76_01965 0.81 +3.2
390,754 - HUW76_01965 0.83 -2.2
390,809 - HUW76_01965 0.87 -0.7
390,809 - HUW76_01965 0.87 -0.1
390,857 + -3.2
390,857 + +0.8
390,864 + -1.3
390,872 - -1.3
390,872 - -0.1
390,872 - +0.5
390,877 - +0.6
390,877 - +0.2
390,880 - -0.1
390,880 - +1.8
390,927 - -0.8
390,927 - -0.4
390,967 + -1.2
390,967 + -0.3
390,967 + +0.1
390,967 + +0.1
390,972 + +0.2
390,972 + +0.9
390,977 + -0.9
390,985 - +0.9
390,985 - -1.1
391,047 + +0.0
391,055 - -0.3
391,055 - -1.6
391,055 - -1.3
391,055 - -0.2
391,122 + HUW76_01970 0.14 -1.9
391,123 + HUW76_01970 0.14 -0.5
391,123 + HUW76_01970 0.14 -1.0
391,131 - HUW76_01970 0.15 -0.2
391,131 - HUW76_01970 0.15 +1.6
391,131 - HUW76_01970 0.15 -1.5
391,150 - HUW76_01970 0.18 +0.2
391,150 - HUW76_01970 0.18 -1.7
391,163 + HUW76_01970 0.20 -0.4
391,188 - HUW76_01970 0.23 -1.0
391,188 - HUW76_01970 0.23 -0.3
391,210 + HUW76_01970 0.26 -0.9
391,227 - HUW76_01970 0.28 -0.8
391,227 - HUW76_01970 0.28 +2.4
391,255 + HUW76_01970 0.32 -0.4
391,295 + HUW76_01970 0.38 -1.8
391,304 - HUW76_01970 0.39 +0.3
391,360 - HUW76_01970 0.46 -0.7
391,383 - HUW76_01970 0.50 -1.0
391,383 - HUW76_01970 0.50 +3.6
391,393 - HUW76_01970 0.51 -1.4
391,410 - HUW76_01970 0.53 -2.0
391,419 + HUW76_01970 0.55 -3.0
391,427 - HUW76_01970 0.56 +0.2
391,443 + HUW76_01970 0.58 +0.3
391,443 + HUW76_01970 0.58 +1.5
391,451 - HUW76_01970 0.59 -1.0
391,473 + HUW76_01970 0.62 -1.4
391,476 - HUW76_01970 0.62 -1.6
391,476 - HUW76_01970 0.62 -1.9
391,533 + HUW76_01970 0.70 +0.8
391,547 - HUW76_01970 0.72 -2.9
391,559 + HUW76_01970 0.74 +2.0
391,567 - HUW76_01970 0.75 +0.0
391,569 + HUW76_01970 0.75 -0.3
391,569 + HUW76_01970 0.75 -1.7
391,583 + HUW76_01970 0.77 -0.6
391,593 + HUW76_01970 0.78 -0.8
391,593 + HUW76_01970 0.78 +2.3
391,629 + HUW76_01970 0.83 -2.4
391,629 + HUW76_01970 0.83 -1.8
391,635 + HUW76_01970 0.84 +0.4
391,635 + HUW76_01970 0.84 -2.6
391,635 + HUW76_01970 0.84 -1.4
391,643 - HUW76_01970 0.85 +1.2
391,649 - HUW76_01970 0.86 -1.9
391,658 + HUW76_01970 0.87 -1.5
391,666 - HUW76_01970 0.88 -0.5
391,666 - HUW76_01970 0.88 -0.7
391,690 + -3.1
391,744 - -0.6
391,840 + +1.2
391,840 + -1.0
391,956 - +0.3
391,982 - +0.7
391,984 + -2.4
391,984 + -1.6
391,990 + -0.0
391,991 + +0.4
391,991 - -4.0

Or see this region's nucleotide sequence