Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00225

Experiment: G1M3_D3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_00215 and HUW76_00220 are separated by 123 nucleotidesHUW76_00220 and HUW76_00225 are separated by 135 nucleotidesHUW76_00225 and HUW76_00230 are separated by 79 nucleotides HUW76_00215: HUW76_00215 - AAA family ATPase, at 43,163 to 44,794 _00215 HUW76_00220: HUW76_00220 - PepSY domain-containing protein, at 44,918 to 45,202 _00220 HUW76_00225: HUW76_00225 - PD-(D/E)XK nuclease domain-containing protein, at 45,338 to 45,556 _00225 HUW76_00230: HUW76_00230 - flavocytochrome c, at 45,636 to 47,357 _00230 Position (kb) 45 46Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 44.813 kb on - strandat 44.831 kb on + strandat 44.831 kb on + strandat 44.831 kb on + strandat 44.835 kb on + strandat 44.835 kb on + strandat 44.842 kb on + strandat 44.845 kb on + strandat 44.845 kb on + strandat 44.852 kb on + strandat 44.852 kb on + strandat 44.852 kb on + strandat 44.852 kb on + strandat 44.853 kb on - strandat 44.957 kb on + strand, within HUW76_00220at 44.958 kb on + strand, within HUW76_00220at 44.958 kb on + strand, within HUW76_00220at 45.026 kb on - strand, within HUW76_00220at 45.026 kb on - strand, within HUW76_00220at 45.107 kb on - strand, within HUW76_00220at 45.132 kb on + strand, within HUW76_00220at 45.132 kb on + strand, within HUW76_00220at 45.144 kb on + strand, within HUW76_00220at 45.144 kb on + strand, within HUW76_00220at 45.213 kb on + strandat 45.213 kb on + strandat 45.221 kb on - strandat 45.222 kb on + strandat 45.222 kb on + strandat 45.338 kb on + strandat 45.343 kb on + strandat 45.343 kb on + strandat 45.343 kb on + strandat 45.343 kb on + strandat 45.343 kb on + strandat 45.343 kb on + strandat 45.351 kb on - strandat 45.486 kb on + strand, within HUW76_00225at 45.486 kb on + strand, within HUW76_00225at 45.501 kb on + strand, within HUW76_00225at 45.540 kb on - strandat 45.596 kb on - strandat 45.596 kb on - strandat 45.598 kb on + strandat 45.603 kb on + strandat 45.611 kb on - strandat 45.675 kb on + strandat 45.683 kb on - strandat 45.683 kb on - strandat 45.683 kb on - strandat 45.690 kb on - strandat 45.695 kb on + strandat 45.695 kb on + strandat 45.719 kb on + strandat 45.719 kb on + strandat 45.719 kb on - strandat 45.719 kb on - strandat 45.727 kb on + strandat 45.727 kb on + strandat 45.732 kb on + strandat 45.732 kb on + strandat 45.732 kb on + strandat 45.732 kb on + strandat 45.732 kb on + strandat 45.732 kb on + strandat 45.732 kb on + strandat 45.732 kb on + strandat 45.740 kb on - strandat 45.740 kb on - strandat 45.740 kb on - strandat 45.740 kb on - strandat 45.740 kb on - strandat 45.740 kb on - strandat 45.740 kb on - strandat 45.745 kb on - strandat 45.745 kb on - strandat 45.746 kb on - strandat 45.746 kb on - strandat 45.759 kb on + strandat 45.767 kb on - strandat 45.767 kb on - strandat 45.767 kb on - strandat 45.888 kb on - strand, within HUW76_00230at 45.888 kb on - strand, within HUW76_00230at 45.888 kb on - strand, within HUW76_00230at 45.916 kb on - strand, within HUW76_00230at 45.961 kb on + strand, within HUW76_00230at 45.972 kb on - strand, within HUW76_00230at 45.972 kb on - strand, within HUW76_00230at 45.978 kb on - strand, within HUW76_00230at 45.987 kb on + strand, within HUW76_00230at 45.987 kb on + strand, within HUW76_00230at 45.995 kb on - strand, within HUW76_00230at 45.995 kb on - strand, within HUW76_00230at 45.995 kb on - strand, within HUW76_00230at 46.051 kb on + strand, within HUW76_00230at 46.051 kb on + strand, within HUW76_00230at 46.064 kb on - strand, within HUW76_00230at 46.064 kb on - strand, within HUW76_00230at 46.064 kb on - strand, within HUW76_00230at 46.090 kb on + strand, within HUW76_00230at 46.098 kb on - strand, within HUW76_00230at 46.157 kb on + strand, within HUW76_00230at 46.165 kb on - strand, within HUW76_00230at 46.207 kb on + strand, within HUW76_00230at 46.207 kb on + strand, within HUW76_00230at 46.207 kb on + strand, within HUW76_00230at 46.207 kb on + strand, within HUW76_00230at 46.207 kb on + strand, within HUW76_00230at 46.215 kb on - strand, within HUW76_00230at 46.215 kb on - strand, within HUW76_00230at 46.227 kb on + strand, within HUW76_00230at 46.227 kb on + strand, within HUW76_00230at 46.341 kb on - strand, within HUW76_00230at 46.341 kb on - strand, within HUW76_00230at 46.365 kb on - strand, within HUW76_00230at 46.372 kb on - strand, within HUW76_00230at 46.375 kb on + strand, within HUW76_00230at 46.375 kb on + strand, within HUW76_00230at 46.399 kb on + strand, within HUW76_00230at 46.468 kb on + strand, within HUW76_00230at 46.475 kb on + strand, within HUW76_00230at 46.537 kb on + strand, within HUW76_00230at 46.541 kb on + strand, within HUW76_00230at 46.544 kb on + strand, within HUW76_00230at 46.549 kb on - strand, within HUW76_00230at 46.549 kb on - strand, within HUW76_00230at 46.550 kb on - strand, within HUW76_00230at 46.550 kb on - strand, within HUW76_00230

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M3_D3
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44,813 - -1.4
44,831 + +0.6
44,831 + +1.3
44,831 + -0.0
44,835 + +1.1
44,835 + -1.1
44,842 + -0.8
44,845 + -0.3
44,845 + -0.7
44,852 + +0.5
44,852 + +0.6
44,852 + +0.6
44,852 + -3.8
44,853 - -3.1
44,957 + HUW76_00220 0.14 +0.8
44,958 + HUW76_00220 0.14 -0.5
44,958 + HUW76_00220 0.14 +1.4
45,026 - HUW76_00220 0.38 -0.4
45,026 - HUW76_00220 0.38 +0.9
45,107 - HUW76_00220 0.66 +0.9
45,132 + HUW76_00220 0.75 +1.0
45,132 + HUW76_00220 0.75 +1.2
45,144 + HUW76_00220 0.79 +1.6
45,144 + HUW76_00220 0.79 +0.1
45,213 + +0.9
45,213 + +0.5
45,221 - +1.9
45,222 + +0.8
45,222 + +0.4
45,338 + -0.2
45,343 + -0.6
45,343 + +0.3
45,343 + -0.3
45,343 + +1.9
45,343 + +1.6
45,343 + -0.5
45,351 - -0.3
45,486 + HUW76_00225 0.68 +0.3
45,486 + HUW76_00225 0.68 -0.2
45,501 + HUW76_00225 0.74 +0.2
45,540 - +0.5
45,596 - -0.5
45,596 - -1.2
45,598 + +0.0
45,603 + +0.7
45,611 - -1.8
45,675 + -1.3
45,683 - -1.6
45,683 - +0.1
45,683 - -0.2
45,690 - -0.4
45,695 + -0.3
45,695 + -2.2
45,719 + +0.6
45,719 + +0.6
45,719 - -1.1
45,719 - -1.3
45,727 + +0.3
45,727 + +0.6
45,732 + +1.3
45,732 + +0.5
45,732 + -1.9
45,732 + -1.1
45,732 + -0.2
45,732 + -0.3
45,732 + -0.1
45,732 + +0.2
45,740 - +2.0
45,740 - +0.2
45,740 - +3.9
45,740 - +2.0
45,740 - +1.0
45,740 - +1.9
45,740 - +1.1
45,745 - -0.6
45,745 - -2.6
45,746 - -1.4
45,746 - -0.4
45,759 + +0.2
45,767 - -0.6
45,767 - +0.8
45,767 - -1.0
45,888 - HUW76_00230 0.15 +0.6
45,888 - HUW76_00230 0.15 -0.8
45,888 - HUW76_00230 0.15 -2.1
45,916 - HUW76_00230 0.16 +0.7
45,961 + HUW76_00230 0.19 +0.2
45,972 - HUW76_00230 0.20 -0.4
45,972 - HUW76_00230 0.20 +0.6
45,978 - HUW76_00230 0.20 -0.1
45,987 + HUW76_00230 0.20 +0.1
45,987 + HUW76_00230 0.20 +0.4
45,995 - HUW76_00230 0.21 -0.9
45,995 - HUW76_00230 0.21 +0.9
45,995 - HUW76_00230 0.21 -1.6
46,051 + HUW76_00230 0.24 +1.2
46,051 + HUW76_00230 0.24 -0.2
46,064 - HUW76_00230 0.25 -0.7
46,064 - HUW76_00230 0.25 -1.2
46,064 - HUW76_00230 0.25 -1.9
46,090 + HUW76_00230 0.26 +0.9
46,098 - HUW76_00230 0.27 +1.3
46,157 + HUW76_00230 0.30 +0.4
46,165 - HUW76_00230 0.31 +0.9
46,207 + HUW76_00230 0.33 -0.7
46,207 + HUW76_00230 0.33 -1.9
46,207 + HUW76_00230 0.33 +0.6
46,207 + HUW76_00230 0.33 -0.0
46,207 + HUW76_00230 0.33 +0.5
46,215 - HUW76_00230 0.34 -0.1
46,215 - HUW76_00230 0.34 +0.0
46,227 + HUW76_00230 0.34 -0.5
46,227 + HUW76_00230 0.34 +0.7
46,341 - HUW76_00230 0.41 +1.3
46,341 - HUW76_00230 0.41 -1.8
46,365 - HUW76_00230 0.42 -0.4
46,372 - HUW76_00230 0.43 -0.8
46,375 + HUW76_00230 0.43 +0.2
46,375 + HUW76_00230 0.43 +0.9
46,399 + HUW76_00230 0.44 +0.6
46,468 + HUW76_00230 0.48 -1.6
46,475 + HUW76_00230 0.49 +0.7
46,537 + HUW76_00230 0.52 -0.3
46,541 + HUW76_00230 0.53 -0.1
46,544 + HUW76_00230 0.53 -0.9
46,549 - HUW76_00230 0.53 -1.1
46,549 - HUW76_00230 0.53 +0.7
46,550 - HUW76_00230 0.53 -2.2
46,550 - HUW76_00230 0.53 +0.8

Or see this region's nucleotide sequence