Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17510

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS17495 and LRK53_RS17500 are separated by 1 nucleotidesLRK53_RS17500 and LRK53_RS17505 are separated by 45 nucleotidesLRK53_RS17505 and LRK53_RS17510 overlap by 6 nucleotidesLRK53_RS17510 and LRK53_RS17515 are separated by 560 nucleotides LRK53_RS17495: LRK53_RS17495 - hypothetical protein, at 3,836,704 to 3,837,225 _RS17495 LRK53_RS17500: LRK53_RS17500 - YciI family protein, at 3,837,227 to 3,837,601 _RS17500 LRK53_RS17505: LRK53_RS17505 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 3,837,647 to 3,838,219 _RS17505 LRK53_RS17510: LRK53_RS17510 - hypothetical protein, at 3,838,214 to 3,838,459 _RS17510 LRK53_RS17515: LRK53_RS17515 - L,D-transpeptidase family protein, at 3,839,020 to 3,840,702 _RS17515 Position (kb) 3838 3839Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3837.372 kb on + strand, within LRK53_RS17500at 3837.372 kb on + strand, within LRK53_RS17500at 3837.372 kb on + strand, within LRK53_RS17500at 3837.372 kb on + strand, within LRK53_RS17500at 3837.373 kb on - strand, within LRK53_RS17500at 3837.373 kb on - strand, within LRK53_RS17500at 3837.373 kb on - strand, within LRK53_RS17500at 3837.373 kb on - strand, within LRK53_RS17500at 3837.373 kb on - strand, within LRK53_RS17500at 3837.373 kb on - strand, within LRK53_RS17500at 3837.373 kb on - strand, within LRK53_RS17500at 3837.579 kb on + strandat 3837.579 kb on + strandat 3837.579 kb on + strandat 3837.579 kb on + strandat 3837.579 kb on + strandat 3837.579 kb on + strandat 3837.579 kb on + strandat 3837.579 kb on + strandat 3837.579 kb on + strandat 3837.579 kb on + strandat 3837.579 kb on + strandat 3837.580 kb on - strandat 3837.580 kb on - strandat 3837.580 kb on - strandat 3837.580 kb on - strandat 3837.580 kb on - strandat 3837.580 kb on - strandat 3837.580 kb on - strandat 3837.580 kb on - strandat 3837.580 kb on - strandat 3837.580 kb on - strandat 3837.580 kb on - strandat 3837.580 kb on - strandat 3837.637 kb on + strandat 3837.664 kb on + strandat 3837.665 kb on - strandat 3837.714 kb on - strand, within LRK53_RS17505at 3837.714 kb on - strand, within LRK53_RS17505at 3837.724 kb on + strand, within LRK53_RS17505at 3837.724 kb on + strand, within LRK53_RS17505at 3837.725 kb on - strand, within LRK53_RS17505at 3838.069 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.070 kb on + strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.071 kb on - strand, within LRK53_RS17505at 3838.290 kb on + strand, within LRK53_RS17510at 3838.290 kb on + strand, within LRK53_RS17510at 3838.290 kb on + strand, within LRK53_RS17510at 3838.291 kb on - strand, within LRK53_RS17510at 3838.343 kb on + strand, within LRK53_RS17510at 3838.343 kb on + strand, within LRK53_RS17510at 3838.463 kb on + strandat 3838.463 kb on + strandat 3838.961 kb on + strandat 3838.961 kb on + strandat 3838.962 kb on - strandat 3839.102 kb on + strandat 3839.102 kb on + strandat 3839.102 kb on + strandat 3839.102 kb on + strandat 3839.102 kb on + strandat 3839.103 kb on - strandat 3839.103 kb on - strandat 3839.103 kb on - strandat 3839.156 kb on + strandat 3839.156 kb on + strandat 3839.156 kb on + strandat 3839.156 kb on + strandat 3839.157 kb on - strandat 3839.157 kb on - strandat 3839.157 kb on - strandat 3839.157 kb on - strandat 3839.157 kb on - strandat 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.366 kb on + strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.367 kb on - strand, within LRK53_RS17515at 3839.368 kb on + strand, within LRK53_RS17515at 3839.368 kb on + strand, within LRK53_RS17515at 3839.369 kb on - strand, within LRK53_RS17515at 3839.369 kb on - strand, within LRK53_RS17515at 3839.369 kb on - strand, within LRK53_RS17515at 3839.375 kb on + strand, within LRK53_RS17515

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
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3,837,372 + LRK53_RS17500 0.39 +1.2
3,837,372 + LRK53_RS17500 0.39 +0.7
3,837,372 + LRK53_RS17500 0.39 -0.9
3,837,372 + LRK53_RS17500 0.39 -0.1
3,837,373 - LRK53_RS17500 0.39 +0.6
3,837,373 - LRK53_RS17500 0.39 +1.5
3,837,373 - LRK53_RS17500 0.39 -0.5
3,837,373 - LRK53_RS17500 0.39 +0.2
3,837,373 - LRK53_RS17500 0.39 -0.9
3,837,373 - LRK53_RS17500 0.39 -0.5
3,837,373 - LRK53_RS17500 0.39 +0.1
3,837,579 + +0.5
3,837,579 + -0.1
3,837,579 + +0.5
3,837,579 + +0.5
3,837,579 + -1.3
3,837,579 + -1.3
3,837,579 + -1.4
3,837,579 + -0.5
3,837,579 + +0.1
3,837,579 + -0.7
3,837,579 + +1.0
3,837,580 - -0.3
3,837,580 - -0.5
3,837,580 - +0.3
3,837,580 - +1.5
3,837,580 - +3.5
3,837,580 - +0.6
3,837,580 - -1.9
3,837,580 - +2.5
3,837,580 - -2.0
3,837,580 - -0.1
3,837,580 - -1.1
3,837,580 - -0.1
3,837,637 + +2.5
3,837,664 + -0.2
3,837,665 - -0.8
3,837,714 - LRK53_RS17505 0.12 -0.1
3,837,714 - LRK53_RS17505 0.12 -0.5
3,837,724 + LRK53_RS17505 0.13 -0.9
3,837,724 + LRK53_RS17505 0.13 -0.5
3,837,725 - LRK53_RS17505 0.14 -0.1
3,838,069 + LRK53_RS17505 0.74 +2.5
3,838,070 + LRK53_RS17505 0.74 +0.9
3,838,070 + LRK53_RS17505 0.74 -0.1
3,838,070 + LRK53_RS17505 0.74 -0.3
3,838,070 + LRK53_RS17505 0.74 -0.4
3,838,070 + LRK53_RS17505 0.74 +0.5
3,838,070 + LRK53_RS17505 0.74 -1.3
3,838,070 + LRK53_RS17505 0.74 -0.5
3,838,070 + LRK53_RS17505 0.74 +0.2
3,838,070 + LRK53_RS17505 0.74 -2.0
3,838,070 + LRK53_RS17505 0.74 -0.5
3,838,070 + LRK53_RS17505 0.74 +0.2
3,838,070 + LRK53_RS17505 0.74 -2.0
3,838,070 + LRK53_RS17505 0.74 +0.5
3,838,070 + LRK53_RS17505 0.74 -2.5
3,838,070 + LRK53_RS17505 0.74 +0.5
3,838,070 + LRK53_RS17505 0.74 +1.5
3,838,071 - LRK53_RS17505 0.74 +1.5
3,838,071 - LRK53_RS17505 0.74 -0.5
3,838,071 - LRK53_RS17505 0.74 +0.5
3,838,071 - LRK53_RS17505 0.74 +0.5
3,838,071 - LRK53_RS17505 0.74 +2.0
3,838,071 - LRK53_RS17505 0.74 -1.7
3,838,071 - LRK53_RS17505 0.74 -0.6
3,838,071 - LRK53_RS17505 0.74 +0.1
3,838,071 - LRK53_RS17505 0.74 +2.5
3,838,071 - LRK53_RS17505 0.74 -0.8
3,838,071 - LRK53_RS17505 0.74 +1.5
3,838,071 - LRK53_RS17505 0.74 +2.2
3,838,071 - LRK53_RS17505 0.74 +0.2
3,838,071 - LRK53_RS17505 0.74 -0.5
3,838,071 - LRK53_RS17505 0.74 +0.5
3,838,071 - LRK53_RS17505 0.74 -1.5
3,838,071 - LRK53_RS17505 0.74 -0.3
3,838,071 - LRK53_RS17505 0.74 -0.9
3,838,071 - LRK53_RS17505 0.74 -0.5
3,838,071 - LRK53_RS17505 0.74 +0.3
3,838,071 - LRK53_RS17505 0.74 +0.5
3,838,071 - LRK53_RS17505 0.74 +0.1
3,838,290 + LRK53_RS17510 0.31 -1.3
3,838,290 + LRK53_RS17510 0.31 -1.4
3,838,290 + LRK53_RS17510 0.31 -1.1
3,838,291 - LRK53_RS17510 0.31 -1.3
3,838,343 + LRK53_RS17510 0.52 -0.6
3,838,343 + LRK53_RS17510 0.52 -0.9
3,838,463 + -0.5
3,838,463 + +0.1
3,838,961 + +0.9
3,838,961 + +1.5
3,838,962 - -0.1
3,839,102 + -0.8
3,839,102 + -0.9
3,839,102 + +2.0
3,839,102 + -1.1
3,839,102 + -0.7
3,839,103 - -1.2
3,839,103 - -1.7
3,839,103 - +0.5
3,839,156 + +0.1
3,839,156 + -0.3
3,839,156 + +0.1
3,839,156 + -0.3
3,839,157 - +1.5
3,839,157 - -0.4
3,839,157 - -1.1
3,839,157 - -0.7
3,839,157 - -0.1
3,839,366 + LRK53_RS17515 0.21 -0.9
3,839,366 + LRK53_RS17515 0.21 -2.4
3,839,366 + LRK53_RS17515 0.21 -1.1
3,839,366 + LRK53_RS17515 0.21 +3.0
3,839,366 + LRK53_RS17515 0.21 -0.9
3,839,366 + LRK53_RS17515 0.21 +0.9
3,839,366 + LRK53_RS17515 0.21 +0.7
3,839,366 + LRK53_RS17515 0.21 +0.3
3,839,366 + LRK53_RS17515 0.21 -0.5
3,839,366 + LRK53_RS17515 0.21 -1.2
3,839,366 + LRK53_RS17515 0.21 -0.7
3,839,366 + LRK53_RS17515 0.21 -2.4
3,839,366 + LRK53_RS17515 0.21 -0.9
3,839,366 + LRK53_RS17515 0.21 +1.0
3,839,366 + LRK53_RS17515 0.21 +3.0
3,839,366 + LRK53_RS17515 0.21 -0.1
3,839,366 + LRK53_RS17515 0.21 +0.7
3,839,366 + LRK53_RS17515 0.21 -0.5
3,839,366 + LRK53_RS17515 0.21 -1.5
3,839,366 + LRK53_RS17515 0.21 -0.3
3,839,366 + LRK53_RS17515 0.21 -1.1
3,839,366 + LRK53_RS17515 0.21 +0.5
3,839,366 + LRK53_RS17515 0.21 -0.5
3,839,366 + LRK53_RS17515 0.21 -1.5
3,839,366 + LRK53_RS17515 0.21 +0.2
3,839,366 + LRK53_RS17515 0.21 +0.5
3,839,366 + LRK53_RS17515 0.21 +0.1
3,839,366 + LRK53_RS17515 0.21 -0.1
3,839,366 + LRK53_RS17515 0.21 +1.5
3,839,366 + LRK53_RS17515 0.21 -1.0
3,839,366 + LRK53_RS17515 0.21 +1.2
3,839,366 + LRK53_RS17515 0.21 +1.5
3,839,366 + LRK53_RS17515 0.21 -0.5
3,839,366 + LRK53_RS17515 0.21 -0.9
3,839,366 + LRK53_RS17515 0.21 +0.2
3,839,366 + LRK53_RS17515 0.21 +1.5
3,839,366 + LRK53_RS17515 0.21 -0.9
3,839,366 + LRK53_RS17515 0.21 -0.7
3,839,366 + LRK53_RS17515 0.21 +0.1
3,839,367 - LRK53_RS17515 0.21 +1.2
3,839,367 - LRK53_RS17515 0.21 -0.9
3,839,367 - LRK53_RS17515 0.21 +1.5
3,839,367 - LRK53_RS17515 0.21 -1.1
3,839,367 - LRK53_RS17515 0.21 -0.1
3,839,367 - LRK53_RS17515 0.21 +0.5
3,839,367 - LRK53_RS17515 0.21 -0.5
3,839,367 - LRK53_RS17515 0.21 +0.5
3,839,367 - LRK53_RS17515 0.21 -1.2
3,839,367 - LRK53_RS17515 0.21 +0.1
3,839,367 - LRK53_RS17515 0.21 +2.5
3,839,367 - LRK53_RS17515 0.21 -1.0
3,839,367 - LRK53_RS17515 0.21 -0.5
3,839,367 - LRK53_RS17515 0.21 -1.3
3,839,367 - LRK53_RS17515 0.21 +0.5
3,839,367 - LRK53_RS17515 0.21 -0.1
3,839,367 - LRK53_RS17515 0.21 +0.5
3,839,367 - LRK53_RS17515 0.21 +0.5
3,839,367 - LRK53_RS17515 0.21 -0.3
3,839,367 - LRK53_RS17515 0.21 -0.1
3,839,367 - LRK53_RS17515 0.21 -0.1
3,839,367 - LRK53_RS17515 0.21 -1.3
3,839,367 - LRK53_RS17515 0.21 -0.3
3,839,367 - LRK53_RS17515 0.21 -0.5
3,839,367 - LRK53_RS17515 0.21 +1.5
3,839,367 - LRK53_RS17515 0.21 +0.1
3,839,367 - LRK53_RS17515 0.21 +3.0
3,839,367 - LRK53_RS17515 0.21 -1.4
3,839,367 - LRK53_RS17515 0.21 -1.3
3,839,367 - LRK53_RS17515 0.21 -1.1
3,839,367 - LRK53_RS17515 0.21 +1.5
3,839,367 - LRK53_RS17515 0.21 +0.9
3,839,367 - LRK53_RS17515 0.21 +1.5
3,839,367 - LRK53_RS17515 0.21 -0.4
3,839,367 - LRK53_RS17515 0.21 -2.3
3,839,367 - LRK53_RS17515 0.21 -0.1
3,839,367 - LRK53_RS17515 0.21 +0.9
3,839,367 - LRK53_RS17515 0.21 +0.5
3,839,367 - LRK53_RS17515 0.21 +1.0
3,839,367 - LRK53_RS17515 0.21 -0.9
3,839,367 - LRK53_RS17515 0.21 +1.5
3,839,367 - LRK53_RS17515 0.21 -0.1
3,839,367 - LRK53_RS17515 0.21 -1.7
3,839,367 - LRK53_RS17515 0.21 +1.5
3,839,367 - LRK53_RS17515 0.21 +0.2
3,839,367 - LRK53_RS17515 0.21 -1.2
3,839,367 - LRK53_RS17515 0.21 +0.5
3,839,367 - LRK53_RS17515 0.21 -0.9
3,839,367 - LRK53_RS17515 0.21 -1.1
3,839,367 - LRK53_RS17515 0.21 +0.9
3,839,367 - LRK53_RS17515 0.21 +0.1
3,839,367 - LRK53_RS17515 0.21 +0.3
3,839,367 - LRK53_RS17515 0.21 +3.0
3,839,367 - LRK53_RS17515 0.21 -1.1
3,839,367 - LRK53_RS17515 0.21 -0.9
3,839,367 - LRK53_RS17515 0.21 +0.2
3,839,367 - LRK53_RS17515 0.21 -0.5
3,839,367 - LRK53_RS17515 0.21 -0.1
3,839,368 + LRK53_RS17515 0.21 -0.5
3,839,368 + LRK53_RS17515 0.21 +0.5
3,839,369 - LRK53_RS17515 0.21 +0.5
3,839,369 - LRK53_RS17515 0.21 -1.6
3,839,369 - LRK53_RS17515 0.21 -1.5
3,839,375 + LRK53_RS17515 0.21 -0.9

Or see this region's nucleotide sequence