Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16290

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS16280 and LRK53_RS16285 are separated by 26 nucleotidesLRK53_RS16285 and LRK53_RS16290 are separated by 42 nucleotidesLRK53_RS16290 and LRK53_RS16300 are separated by 752 nucleotides LRK53_RS16280: LRK53_RS16280 - cell division protein FtsL, at 3,586,267 to 3,586,506 _RS16280 LRK53_RS16285: LRK53_RS16285 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 3,586,533 to 3,587,459 _RS16285 LRK53_RS16290: LRK53_RS16290 - division/cell wall cluster transcriptional repressor MraZ, at 3,587,502 to 3,587,957 _RS16290 LRK53_RS16300: LRK53_RS16300 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 3,588,710 to 3,589,540 _RS16300 Position (kb) 3587 3588Strain fitness (log2 ratio) -2 -1 0 1 2at 3587.504 kb on - strandat 3587.504 kb on - strandat 3587.504 kb on - strandat 3587.798 kb on - strand, within LRK53_RS16290at 3587.837 kb on - strand, within LRK53_RS16290at 3587.837 kb on - strand, within LRK53_RS16290at 3587.837 kb on - strand, within LRK53_RS16290at 3587.837 kb on - strand, within LRK53_RS16290at 3587.837 kb on - strand, within LRK53_RS16290at 3587.837 kb on - strand, within LRK53_RS16290at 3587.837 kb on - strand, within LRK53_RS16290at 3587.837 kb on - strand, within LRK53_RS16290at 3587.837 kb on - strand, within LRK53_RS16290at 3587.837 kb on - strand, within LRK53_RS16290at 3588.650 kb on + strandat 3588.650 kb on + strandat 3588.650 kb on + strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.651 kb on - strandat 3588.721 kb on - strandat 3588.721 kb on - strandat 3588.721 kb on - strandat 3588.721 kb on - strandat 3588.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
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3,587,504 - -0.1
3,587,504 - +0.9
3,587,504 - -0.7
3,587,798 - LRK53_RS16290 0.65 -1.0
3,587,837 - LRK53_RS16290 0.73 -2.2
3,587,837 - LRK53_RS16290 0.73 +0.6
3,587,837 - LRK53_RS16290 0.73 +0.3
3,587,837 - LRK53_RS16290 0.73 -2.5
3,587,837 - LRK53_RS16290 0.73 -1.5
3,587,837 - LRK53_RS16290 0.73 +1.3
3,587,837 - LRK53_RS16290 0.73 -1.8
3,587,837 - LRK53_RS16290 0.73 -0.2
3,587,837 - LRK53_RS16290 0.73 -1.0
3,587,837 - LRK53_RS16290 0.73 -0.2
3,588,650 + +0.3
3,588,650 + +0.9
3,588,650 + -0.2
3,588,651 - +1.3
3,588,651 - -0.7
3,588,651 - -0.7
3,588,651 - -0.7
3,588,651 - +0.1
3,588,651 - -0.7
3,588,651 - +0.0
3,588,651 - -1.1
3,588,651 - -1.0
3,588,651 - +1.8
3,588,651 - -0.5
3,588,651 - +0.3
3,588,651 - -0.2
3,588,651 - -0.5
3,588,651 - -0.7
3,588,721 - -0.7
3,588,721 - -0.7
3,588,721 - -0.5
3,588,721 - -0.5
3,588,721 - -0.2

Or see this region's nucleotide sequence