Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14950

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14940 and LRK53_RS14945 are separated by 13 nucleotidesLRK53_RS14945 and LRK53_RS14950 are separated by 234 nucleotidesLRK53_RS14950 and LRK53_RS14955 overlap by 4 nucleotidesLRK53_RS14955 and LRK53_RS14960 are separated by 16 nucleotidesLRK53_RS14960 and LRK53_RS14965 overlap by 11 nucleotides LRK53_RS14940: LRK53_RS14940 - response regulator, at 3,269,299 to 3,269,661 _RS14940 LRK53_RS14945: LRK53_RS14945 - STAS domain-containing protein, at 3,269,675 to 3,270,070 _RS14945 LRK53_RS14950: LRK53_RS14950 - flagellar hook-length control protein FliK, at 3,270,305 to 3,271,447 _RS14950 LRK53_RS14955: LRK53_RS14955 - hypothetical protein, at 3,271,444 to 3,271,704 _RS14955 LRK53_RS14960: LRK53_RS14960 - DUF2802 domain-containing protein, at 3,271,721 to 3,272,068 _RS14960 LRK53_RS14965: LRK53_RS14965 - chemotaxis protein CheW, at 3,272,058 to 3,272,537 _RS14965 Position (kb) 3270 3271 3272Strain fitness (log2 ratio) -1 0 1 2at 3269.444 kb on + strand, within LRK53_RS14940at 3269.444 kb on + strand, within LRK53_RS14940at 3269.444 kb on + strand, within LRK53_RS14940at 3269.444 kb on + strand, within LRK53_RS14940at 3269.444 kb on + strand, within LRK53_RS14940at 3269.444 kb on + strand, within LRK53_RS14940at 3269.444 kb on + strand, within LRK53_RS14940at 3269.444 kb on + strand, within LRK53_RS14940at 3269.444 kb on + strand, within LRK53_RS14940at 3269.444 kb on + strand, within LRK53_RS14940at 3269.444 kb on + strand, within LRK53_RS14940at 3269.444 kb on + strand, within LRK53_RS14940at 3269.445 kb on - strand, within LRK53_RS14940at 3269.445 kb on - strand, within LRK53_RS14940at 3269.445 kb on - strand, within LRK53_RS14940at 3269.445 kb on - strand, within LRK53_RS14940at 3269.445 kb on - strand, within LRK53_RS14940at 3269.445 kb on - strand, within LRK53_RS14940at 3269.445 kb on - strand, within LRK53_RS14940at 3269.445 kb on - strand, within LRK53_RS14940at 3269.445 kb on - strand, within LRK53_RS14940at 3269.445 kb on - strand, within LRK53_RS14940at 3271.275 kb on + strand, within LRK53_RS14950at 3271.275 kb on + strand, within LRK53_RS14950at 3271.362 kb on + strandat 3271.363 kb on - strandat 3271.459 kb on + strandat 3271.460 kb on - strandat 3271.652 kb on - strand, within LRK53_RS14955at 3271.684 kb on + strandat 3271.684 kb on + strandat 3271.685 kb on - strandat 3271.685 kb on - strandat 3271.839 kb on + strand, within LRK53_RS14960at 3271.839 kb on + strand, within LRK53_RS14960at 3271.840 kb on - strand, within LRK53_RS14960at 3272.376 kb on + strand, within LRK53_RS14965at 3272.377 kb on - strand, within LRK53_RS14965

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
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3,269,444 + LRK53_RS14940 0.40 -1.1
3,269,444 + LRK53_RS14940 0.40 +1.3
3,269,444 + LRK53_RS14940 0.40 +0.7
3,269,444 + LRK53_RS14940 0.40 -1.1
3,269,444 + LRK53_RS14940 0.40 -1.2
3,269,444 + LRK53_RS14940 0.40 +0.5
3,269,444 + LRK53_RS14940 0.40 +2.6
3,269,444 + LRK53_RS14940 0.40 +0.3
3,269,444 + LRK53_RS14940 0.40 -0.3
3,269,444 + LRK53_RS14940 0.40 -0.5
3,269,444 + LRK53_RS14940 0.40 -0.3
3,269,444 + LRK53_RS14940 0.40 -0.3
3,269,445 - LRK53_RS14940 0.40 -1.7
3,269,445 - LRK53_RS14940 0.40 -0.1
3,269,445 - LRK53_RS14940 0.40 +0.3
3,269,445 - LRK53_RS14940 0.40 -1.2
3,269,445 - LRK53_RS14940 0.40 -0.3
3,269,445 - LRK53_RS14940 0.40 +0.0
3,269,445 - LRK53_RS14940 0.40 +1.3
3,269,445 - LRK53_RS14940 0.40 +0.3
3,269,445 - LRK53_RS14940 0.40 -1.3
3,269,445 - LRK53_RS14940 0.40 -1.1
3,271,275 + LRK53_RS14950 0.85 -0.7
3,271,275 + LRK53_RS14950 0.85 -1.7
3,271,362 + -0.3
3,271,363 - +1.0
3,271,459 + -0.5
3,271,460 - +1.3
3,271,652 - LRK53_RS14955 0.80 +1.3
3,271,684 + -0.7
3,271,684 + -0.1
3,271,685 - +1.3
3,271,685 - +0.7
3,271,839 + LRK53_RS14960 0.34 +0.3
3,271,839 + LRK53_RS14960 0.34 +0.3
3,271,840 - LRK53_RS14960 0.34 -0.4
3,272,376 + LRK53_RS14965 0.66 +0.7
3,272,377 - LRK53_RS14965 0.66 +0.3

Or see this region's nucleotide sequence