Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11300

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS11290 and LRK53_RS11295 are separated by 78 nucleotidesLRK53_RS11295 and LRK53_RS11300 overlap by 4 nucleotidesLRK53_RS11300 and LRK53_RS11305 overlap by 14 nucleotides LRK53_RS11290: LRK53_RS11290 - FAD-binding oxidoreductase, at 2,516,532 to 2,517,821 _RS11290 LRK53_RS11295: LRK53_RS11295 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 2,517,900 to 2,518,775 _RS11295 LRK53_RS11300: LRK53_RS11300 - polysaccharide biosynthesis protein, at 2,518,772 to 2,520,670 _RS11300 LRK53_RS11305: LRK53_RS11305 - glycosyltransferase family 4 protein, at 2,520,657 to 2,521,679 _RS11305 Position (kb) 2518 2519 2520 2521Strain fitness (log2 ratio) -2 -1 0 1 2at 2517.794 kb on - strandat 2517.794 kb on - strandat 2517.794 kb on - strandat 2517.796 kb on + strandat 2517.796 kb on + strandat 2517.796 kb on + strandat 2517.796 kb on + strandat 2517.796 kb on + strandat 2517.796 kb on + strandat 2517.796 kb on + strandat 2517.796 kb on + strandat 2517.796 kb on + strandat 2517.796 kb on + strandat 2517.796 kb on + strandat 2517.796 kb on + strandat 2517.797 kb on - strandat 2517.797 kb on - strandat 2517.797 kb on - strandat 2517.797 kb on - strandat 2517.797 kb on - strandat 2517.797 kb on - strandat 2517.797 kb on - strandat 2518.866 kb on - strandat 2518.999 kb on - strand, within LRK53_RS11300at 2518.999 kb on - strand, within LRK53_RS11300at 2518.999 kb on - strand, within LRK53_RS11300at 2519.229 kb on + strand, within LRK53_RS11300at 2519.382 kb on + strand, within LRK53_RS11300at 2519.382 kb on + strand, within LRK53_RS11300at 2519.383 kb on - strand, within LRK53_RS11300at 2519.383 kb on - strand, within LRK53_RS11300at 2520.110 kb on - strand, within LRK53_RS11300at 2520.191 kb on + strand, within LRK53_RS11300at 2520.191 kb on + strand, within LRK53_RS11300at 2520.191 kb on + strand, within LRK53_RS11300at 2520.191 kb on + strand, within LRK53_RS11300at 2520.192 kb on - strand, within LRK53_RS11300at 2520.192 kb on - strand, within LRK53_RS11300at 2520.328 kb on - strand, within LRK53_RS11300at 2520.370 kb on - strand, within LRK53_RS11300at 2520.565 kb on - strandat 2520.659 kb on - strandat 2520.675 kb on + strandat 2520.675 kb on + strandat 2520.676 kb on - strandat 2520.773 kb on - strand, within LRK53_RS11305at 2520.833 kb on - strand, within LRK53_RS11305

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
remove
2,517,794 - -1.9
2,517,794 - +1.2
2,517,794 - -0.4
2,517,796 + -2.0
2,517,796 + +0.4
2,517,796 + +1.2
2,517,796 + +2.2
2,517,796 + -0.4
2,517,796 + -0.6
2,517,796 + -1.1
2,517,796 + +0.2
2,517,796 + -0.4
2,517,796 + +0.5
2,517,796 + +1.2
2,517,796 + -2.0
2,517,797 - -0.2
2,517,797 - +0.2
2,517,797 - -0.7
2,517,797 - +0.5
2,517,797 - +0.6
2,517,797 - -1.0
2,517,797 - -0.7
2,518,866 - +0.0
2,518,999 - LRK53_RS11300 0.12 +1.2
2,518,999 - LRK53_RS11300 0.12 +0.2
2,518,999 - LRK53_RS11300 0.12 +1.2
2,519,229 + LRK53_RS11300 0.24 -0.4
2,519,382 + LRK53_RS11300 0.32 -1.4
2,519,382 + LRK53_RS11300 0.32 +0.2
2,519,383 - LRK53_RS11300 0.32 +0.5
2,519,383 - LRK53_RS11300 0.32 -0.4
2,520,110 - LRK53_RS11300 0.70 -1.7
2,520,191 + LRK53_RS11300 0.75 -1.1
2,520,191 + LRK53_RS11300 0.75 -0.8
2,520,191 + LRK53_RS11300 0.75 -0.4
2,520,191 + LRK53_RS11300 0.75 +1.2
2,520,192 - LRK53_RS11300 0.75 +0.2
2,520,192 - LRK53_RS11300 0.75 +2.2
2,520,328 - LRK53_RS11300 0.82 -1.1
2,520,370 - LRK53_RS11300 0.84 +0.1
2,520,565 - -0.4
2,520,659 - -0.6
2,520,675 + +1.2
2,520,675 + +0.6
2,520,676 - +0.5
2,520,773 - LRK53_RS11305 0.11 -0.4
2,520,833 - LRK53_RS11305 0.17 -0.8

Or see this region's nucleotide sequence