Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09805

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09790 and LRK53_RS09795 are separated by 302 nucleotidesLRK53_RS09795 and LRK53_RS09800 are separated by 93 nucleotidesLRK53_RS09800 and LRK53_RS09805 are separated by 62 nucleotidesLRK53_RS09805 and LRK53_RS09810 are separated by 89 nucleotides LRK53_RS09790: LRK53_RS09790 - tRNA-Cys, at 2,200,157 to 2,200,230 _RS09790 LRK53_RS09795: LRK53_RS09795 - HU family DNA-binding protein, at 2,200,533 to 2,200,913 _RS09795 LRK53_RS09800: LRK53_RS09800 - tRNA-Leu, at 2,201,007 to 2,201,090 _RS09800 LRK53_RS09805: LRK53_RS09805 - TraB/GumN family protein, at 2,201,153 to 2,202,388 _RS09805 LRK53_RS09810: LRK53_RS09810 - carbon-nitrogen hydrolase, at 2,202,478 to 2,203,368 _RS09810 Position (kb) 2201 2202 2203Strain fitness (log2 ratio) -2 -1 0 1 2at 2200.398 kb on - strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.515 kb on - strandat 2200.515 kb on - strandat 2200.515 kb on - strandat 2200.515 kb on - strandat 2201.126 kb on + strandat 2201.126 kb on + strandat 2201.126 kb on + strandat 2201.126 kb on + strandat 2201.127 kb on - strandat 2201.127 kb on - strandat 2201.127 kb on - strandat 2201.127 kb on - strandat 2201.127 kb on - strandat 2201.127 kb on - strandat 2201.127 kb on - strandat 2201.127 kb on - strandat 2201.190 kb on + strandat 2201.190 kb on + strandat 2201.190 kb on + strandat 2201.190 kb on + strandat 2201.191 kb on - strandat 2201.191 kb on - strandat 2201.191 kb on - strandat 2201.191 kb on - strandat 2201.191 kb on - strandat 2201.543 kb on + strand, within LRK53_RS09805at 2201.543 kb on + strand, within LRK53_RS09805at 2201.543 kb on + strand, within LRK53_RS09805at 2201.543 kb on + strand, within LRK53_RS09805at 2201.543 kb on + strand, within LRK53_RS09805at 2201.544 kb on - strand, within LRK53_RS09805at 2201.787 kb on + strand, within LRK53_RS09805at 2201.787 kb on + strand, within LRK53_RS09805at 2201.788 kb on - strand, within LRK53_RS09805at 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.300 kb on + strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strandat 2202.301 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
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2,200,398 - -1.9
2,200,496 + +0.2
2,200,496 + +1.2
2,200,496 + +0.0
2,200,496 + -2.7
2,200,496 + -1.8
2,200,496 + -0.9
2,200,496 + -0.1
2,200,496 + -0.8
2,200,496 + -0.1
2,200,497 - -1.3
2,200,497 - +0.2
2,200,497 - -0.8
2,200,497 - +2.2
2,200,497 - -1.0
2,200,497 - +1.2
2,200,497 - +0.4
2,200,497 - +0.2
2,200,514 + -0.2
2,200,514 + -1.9
2,200,514 + +0.6
2,200,514 + +0.2
2,200,514 + +0.4
2,200,514 + -0.4
2,200,514 + -0.4
2,200,514 + -0.8
2,200,515 - +0.5
2,200,515 - +1.2
2,200,515 - -0.7
2,200,515 - -0.1
2,201,126 + +0.2
2,201,126 + -0.6
2,201,126 + +2.2
2,201,126 + +2.2
2,201,127 - +0.5
2,201,127 - +0.2
2,201,127 - -0.9
2,201,127 - -0.4
2,201,127 - -1.1
2,201,127 - +1.2
2,201,127 - +0.9
2,201,127 - +1.2
2,201,190 + -0.8
2,201,190 + -0.2
2,201,190 + -0.8
2,201,190 + +0.2
2,201,191 - -0.6
2,201,191 - -0.8
2,201,191 - -0.9
2,201,191 - +0.5
2,201,191 - -2.3
2,201,543 + LRK53_RS09805 0.32 -2.4
2,201,543 + LRK53_RS09805 0.32 -2.2
2,201,543 + LRK53_RS09805 0.32 -1.0
2,201,543 + LRK53_RS09805 0.32 -0.9
2,201,543 + LRK53_RS09805 0.32 -1.3
2,201,544 - LRK53_RS09805 0.32 -1.1
2,201,787 + LRK53_RS09805 0.51 -1.1
2,201,787 + LRK53_RS09805 0.51 -0.9
2,201,788 - LRK53_RS09805 0.51 -1.4
2,202,300 + +0.4
2,202,300 + +0.2
2,202,300 + +1.8
2,202,300 + +0.2
2,202,300 + -1.4
2,202,300 + -0.4
2,202,300 + +0.2
2,202,300 + -1.3
2,202,300 + -1.5
2,202,300 + -0.9
2,202,300 + +1.2
2,202,300 + -0.2
2,202,300 + +0.7
2,202,300 + -1.6
2,202,300 + -0.4
2,202,300 + -1.1
2,202,300 + -0.8
2,202,300 + -1.1
2,202,300 + +0.6
2,202,300 + +0.1
2,202,300 + +0.2
2,202,300 + -1.4
2,202,300 + -0.9
2,202,301 - -1.2
2,202,301 - -0.9
2,202,301 - -0.6
2,202,301 - -0.3
2,202,301 - +0.1
2,202,301 - -0.4
2,202,301 - -1.0
2,202,301 - +0.8
2,202,301 - -1.0
2,202,301 - -0.8
2,202,301 - -1.4
2,202,301 - -1.7
2,202,301 - +0.2
2,202,301 - +0.1
2,202,301 - -0.8
2,202,301 - -1.1
2,202,301 - +0.2
2,202,301 - -1.2
2,202,301 - -0.0
2,202,301 - -1.1
2,202,301 - -0.1
2,202,301 - +0.2
2,202,301 - -0.2

Or see this region's nucleotide sequence