Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09790 and LRK53_RS09795 are separated by 302 nucleotides LRK53_RS09795 and LRK53_RS09800 are separated by 93 nucleotides LRK53_RS09800 and LRK53_RS09805 are separated by 62 nucleotides LRK53_RS09805 and LRK53_RS09810 are separated by 89 nucleotides
LRK53_RS09790: LRK53_RS09790 - tRNA-Cys, at 2,200,157 to 2,200,230
_RS09790
LRK53_RS09795: LRK53_RS09795 - HU family DNA-binding protein, at 2,200,533 to 2,200,913
_RS09795
LRK53_RS09800: LRK53_RS09800 - tRNA-Leu, at 2,201,007 to 2,201,090
_RS09800
LRK53_RS09805: LRK53_RS09805 - TraB/GumN family protein, at 2,201,153 to 2,202,388
_RS09805
LRK53_RS09810: LRK53_RS09810 - carbon-nitrogen hydrolase, at 2,202,478 to 2,203,368
_RS09810
Position (kb)
2201
2202
2203 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2200.398 kb on - strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.515 kb on - strand at 2200.515 kb on - strand at 2200.515 kb on - strand at 2200.515 kb on - strand at 2201.126 kb on + strand at 2201.126 kb on + strand at 2201.126 kb on + strand at 2201.126 kb on + strand at 2201.127 kb on - strand at 2201.127 kb on - strand at 2201.127 kb on - strand at 2201.127 kb on - strand at 2201.127 kb on - strand at 2201.127 kb on - strand at 2201.127 kb on - strand at 2201.127 kb on - strand at 2201.190 kb on + strand at 2201.190 kb on + strand at 2201.190 kb on + strand at 2201.190 kb on + strand at 2201.191 kb on - strand at 2201.191 kb on - strand at 2201.191 kb on - strand at 2201.191 kb on - strand at 2201.191 kb on - strand at 2201.543 kb on + strand, within LRK53_RS09805 at 2201.543 kb on + strand, within LRK53_RS09805 at 2201.543 kb on + strand, within LRK53_RS09805 at 2201.543 kb on + strand, within LRK53_RS09805 at 2201.543 kb on + strand, within LRK53_RS09805 at 2201.544 kb on - strand, within LRK53_RS09805 at 2201.787 kb on + strand, within LRK53_RS09805 at 2201.787 kb on + strand, within LRK53_RS09805 at 2201.788 kb on - strand, within LRK53_RS09805 at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.300 kb on + strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand at 2202.301 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM remove 2,200,398 - -1.9 2,200,496 + +0.2 2,200,496 + +1.2 2,200,496 + +0.0 2,200,496 + -2.7 2,200,496 + -1.8 2,200,496 + -0.9 2,200,496 + -0.1 2,200,496 + -0.8 2,200,496 + -0.1 2,200,497 - -1.3 2,200,497 - +0.2 2,200,497 - -0.8 2,200,497 - +2.2 2,200,497 - -1.0 2,200,497 - +1.2 2,200,497 - +0.4 2,200,497 - +0.2 2,200,514 + -0.2 2,200,514 + -1.9 2,200,514 + +0.6 2,200,514 + +0.2 2,200,514 + +0.4 2,200,514 + -0.4 2,200,514 + -0.4 2,200,514 + -0.8 2,200,515 - +0.5 2,200,515 - +1.2 2,200,515 - -0.7 2,200,515 - -0.1 2,201,126 + +0.2 2,201,126 + -0.6 2,201,126 + +2.2 2,201,126 + +2.2 2,201,127 - +0.5 2,201,127 - +0.2 2,201,127 - -0.9 2,201,127 - -0.4 2,201,127 - -1.1 2,201,127 - +1.2 2,201,127 - +0.9 2,201,127 - +1.2 2,201,190 + -0.8 2,201,190 + -0.2 2,201,190 + -0.8 2,201,190 + +0.2 2,201,191 - -0.6 2,201,191 - -0.8 2,201,191 - -0.9 2,201,191 - +0.5 2,201,191 - -2.3 2,201,543 + LRK53_RS09805 0.32 -2.4 2,201,543 + LRK53_RS09805 0.32 -2.2 2,201,543 + LRK53_RS09805 0.32 -1.0 2,201,543 + LRK53_RS09805 0.32 -0.9 2,201,543 + LRK53_RS09805 0.32 -1.3 2,201,544 - LRK53_RS09805 0.32 -1.1 2,201,787 + LRK53_RS09805 0.51 -1.1 2,201,787 + LRK53_RS09805 0.51 -0.9 2,201,788 - LRK53_RS09805 0.51 -1.4 2,202,300 + +0.4 2,202,300 + +0.2 2,202,300 + +1.8 2,202,300 + +0.2 2,202,300 + -1.4 2,202,300 + -0.4 2,202,300 + +0.2 2,202,300 + -1.3 2,202,300 + -1.5 2,202,300 + -0.9 2,202,300 + +1.2 2,202,300 + -0.2 2,202,300 + +0.7 2,202,300 + -1.6 2,202,300 + -0.4 2,202,300 + -1.1 2,202,300 + -0.8 2,202,300 + -1.1 2,202,300 + +0.6 2,202,300 + +0.1 2,202,300 + +0.2 2,202,300 + -1.4 2,202,300 + -0.9 2,202,301 - -1.2 2,202,301 - -0.9 2,202,301 - -0.6 2,202,301 - -0.3 2,202,301 - +0.1 2,202,301 - -0.4 2,202,301 - -1.0 2,202,301 - +0.8 2,202,301 - -1.0 2,202,301 - -0.8 2,202,301 - -1.4 2,202,301 - -1.7 2,202,301 - +0.2 2,202,301 - +0.1 2,202,301 - -0.8 2,202,301 - -1.1 2,202,301 - +0.2 2,202,301 - -1.2 2,202,301 - -0.0 2,202,301 - -1.1 2,202,301 - -0.1 2,202,301 - +0.2 2,202,301 - -0.2
Or see this region's nucleotide sequence