Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08205

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08195 and LRK53_RS08200 are separated by 148 nucleotidesLRK53_RS08200 and LRK53_RS08205 are separated by 121 nucleotidesLRK53_RS08205 and LRK53_RS08210 are separated by 94 nucleotides LRK53_RS08195: LRK53_RS08195 - class I SAM-dependent methyltransferase, at 1,845,645 to 1,846,253 _RS08195 LRK53_RS08200: LRK53_RS08200 - endonuclease III, at 1,846,402 to 1,847,037 _RS08200 LRK53_RS08205: LRK53_RS08205 - RnfABCDGE type electron transport complex subunit B, at 1,847,159 to 1,847,761 _RS08205 LRK53_RS08210: LRK53_RS08210 - methionine--tRNA ligase, at 1,847,856 to 1,849,982 _RS08210 Position (kb) 1847 1848Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1846.191 kb on + strand, within LRK53_RS08195at 1846.191 kb on + strand, within LRK53_RS08195at 1846.192 kb on - strand, within LRK53_RS08195at 1846.192 kb on - strand, within LRK53_RS08195at 1846.275 kb on - strandat 1846.275 kb on - strandat 1846.275 kb on - strandat 1846.275 kb on - strandat 1846.369 kb on + strandat 1846.369 kb on + strandat 1846.404 kb on - strandat 1846.424 kb on + strandat 1846.424 kb on + strandat 1846.424 kb on + strandat 1846.424 kb on + strandat 1846.424 kb on + strandat 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.480 kb on + strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.481 kb on - strand, within LRK53_RS08200at 1846.484 kb on + strand, within LRK53_RS08200at 1846.484 kb on + strand, within LRK53_RS08200at 1846.484 kb on + strand, within LRK53_RS08200at 1846.663 kb on + strand, within LRK53_RS08200at 1846.663 kb on + strand, within LRK53_RS08200at 1846.663 kb on + strand, within LRK53_RS08200at 1846.814 kb on + strand, within LRK53_RS08200at 1846.814 kb on + strand, within LRK53_RS08200at 1846.814 kb on + strand, within LRK53_RS08200at 1846.814 kb on + strand, within LRK53_RS08200at 1846.814 kb on + strand, within LRK53_RS08200at 1846.814 kb on + strand, within LRK53_RS08200at 1846.814 kb on + strand, within LRK53_RS08200at 1846.814 kb on + strand, within LRK53_RS08200at 1846.814 kb on + strand, within LRK53_RS08200at 1846.814 kb on + strand, within LRK53_RS08200at 1846.814 kb on + strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.815 kb on - strand, within LRK53_RS08200at 1846.874 kb on + strand, within LRK53_RS08200at 1847.679 kb on + strand, within LRK53_RS08205at 1847.679 kb on + strand, within LRK53_RS08205at 1847.680 kb on - strand, within LRK53_RS08205at 1847.782 kb on - strandat 1847.782 kb on - strandat 1847.782 kb on - strandat 1847.782 kb on - strandat 1847.788 kb on + strandat 1847.789 kb on - strandat 1847.789 kb on - strandat 1847.789 kb on - strandat 1847.789 kb on - strandat 1847.825 kb on + strandat 1847.826 kb on - strandat 1847.826 kb on - strandat 1847.826 kb on - strandat 1847.832 kb on + strandat 1847.833 kb on - strandat 1847.839 kb on + strandat 1847.840 kb on - strandat 1847.840 kb on - strandat 1847.840 kb on - strandat 1847.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
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1,846,191 + LRK53_RS08195 0.90 +1.2
1,846,191 + LRK53_RS08195 0.90 +1.8
1,846,192 - LRK53_RS08195 0.90 -0.6
1,846,192 - LRK53_RS08195 0.90 -2.4
1,846,275 - -1.4
1,846,275 - +0.8
1,846,275 - +0.5
1,846,275 - -0.8
1,846,369 + +0.2
1,846,369 + -0.5
1,846,404 - -0.4
1,846,424 + -1.3
1,846,424 + -1.8
1,846,424 + -0.6
1,846,424 + -1.0
1,846,424 + +0.1
1,846,480 + LRK53_RS08200 0.12 -1.5
1,846,480 + LRK53_RS08200 0.12 -0.2
1,846,480 + LRK53_RS08200 0.12 -0.4
1,846,480 + LRK53_RS08200 0.12 +1.2
1,846,480 + LRK53_RS08200 0.12 -0.1
1,846,480 + LRK53_RS08200 0.12 -0.4
1,846,480 + LRK53_RS08200 0.12 +2.2
1,846,480 + LRK53_RS08200 0.12 +0.6
1,846,480 + LRK53_RS08200 0.12 -0.4
1,846,480 + LRK53_RS08200 0.12 +1.2
1,846,480 + LRK53_RS08200 0.12 +0.8
1,846,480 + LRK53_RS08200 0.12 -0.1
1,846,480 + LRK53_RS08200 0.12 -0.8
1,846,480 + LRK53_RS08200 0.12 +0.2
1,846,480 + LRK53_RS08200 0.12 +0.8
1,846,480 + LRK53_RS08200 0.12 -0.8
1,846,480 + LRK53_RS08200 0.12 +0.2
1,846,480 + LRK53_RS08200 0.12 -0.8
1,846,480 + LRK53_RS08200 0.12 -0.8
1,846,480 + LRK53_RS08200 0.12 +1.2
1,846,480 + LRK53_RS08200 0.12 +3.5
1,846,480 + LRK53_RS08200 0.12 -0.4
1,846,480 + LRK53_RS08200 0.12 +0.2
1,846,480 + LRK53_RS08200 0.12 -0.0
1,846,480 + LRK53_RS08200 0.12 -0.1
1,846,480 + LRK53_RS08200 0.12 +1.2
1,846,480 + LRK53_RS08200 0.12 -1.1
1,846,480 + LRK53_RS08200 0.12 +0.2
1,846,481 - LRK53_RS08200 0.12 -0.8
1,846,481 - LRK53_RS08200 0.12 +0.6
1,846,481 - LRK53_RS08200 0.12 -1.1
1,846,481 - LRK53_RS08200 0.12 -0.6
1,846,481 - LRK53_RS08200 0.12 -0.6
1,846,481 - LRK53_RS08200 0.12 +1.2
1,846,481 - LRK53_RS08200 0.12 -0.4
1,846,481 - LRK53_RS08200 0.12 +0.5
1,846,481 - LRK53_RS08200 0.12 +0.6
1,846,481 - LRK53_RS08200 0.12 -2.1
1,846,481 - LRK53_RS08200 0.12 -1.2
1,846,481 - LRK53_RS08200 0.12 +0.8
1,846,481 - LRK53_RS08200 0.12 +0.2
1,846,481 - LRK53_RS08200 0.12 +1.2
1,846,481 - LRK53_RS08200 0.12 -0.2
1,846,481 - LRK53_RS08200 0.12 -0.6
1,846,481 - LRK53_RS08200 0.12 -0.4
1,846,481 - LRK53_RS08200 0.12 -0.8
1,846,481 - LRK53_RS08200 0.12 -0.6
1,846,481 - LRK53_RS08200 0.12 -1.1
1,846,481 - LRK53_RS08200 0.12 -0.6
1,846,481 - LRK53_RS08200 0.12 +0.5
1,846,481 - LRK53_RS08200 0.12 -1.4
1,846,481 - LRK53_RS08200 0.12 +1.2
1,846,481 - LRK53_RS08200 0.12 -0.4
1,846,481 - LRK53_RS08200 0.12 +0.7
1,846,481 - LRK53_RS08200 0.12 +0.2
1,846,481 - LRK53_RS08200 0.12 +0.5
1,846,484 + LRK53_RS08200 0.13 +2.2
1,846,484 + LRK53_RS08200 0.13 -1.6
1,846,484 + LRK53_RS08200 0.13 -0.5
1,846,663 + LRK53_RS08200 0.41 -0.9
1,846,663 + LRK53_RS08200 0.41 +0.6
1,846,663 + LRK53_RS08200 0.41 -0.7
1,846,814 + LRK53_RS08200 0.65 -0.6
1,846,814 + LRK53_RS08200 0.65 -0.4
1,846,814 + LRK53_RS08200 0.65 -0.4
1,846,814 + LRK53_RS08200 0.65 -0.4
1,846,814 + LRK53_RS08200 0.65 -1.8
1,846,814 + LRK53_RS08200 0.65 -0.5
1,846,814 + LRK53_RS08200 0.65 -0.8
1,846,814 + LRK53_RS08200 0.65 +0.6
1,846,814 + LRK53_RS08200 0.65 +0.5
1,846,814 + LRK53_RS08200 0.65 -1.1
1,846,814 + LRK53_RS08200 0.65 +0.2
1,846,815 - LRK53_RS08200 0.65 -0.2
1,846,815 - LRK53_RS08200 0.65 +1.0
1,846,815 - LRK53_RS08200 0.65 -0.8
1,846,815 - LRK53_RS08200 0.65 -1.1
1,846,815 - LRK53_RS08200 0.65 -0.8
1,846,815 - LRK53_RS08200 0.65 +1.2
1,846,815 - LRK53_RS08200 0.65 +0.2
1,846,815 - LRK53_RS08200 0.65 -0.4
1,846,815 - LRK53_RS08200 0.65 -2.1
1,846,815 - LRK53_RS08200 0.65 -0.8
1,846,815 - LRK53_RS08200 0.65 -0.1
1,846,815 - LRK53_RS08200 0.65 -0.8
1,846,815 - LRK53_RS08200 0.65 +0.6
1,846,874 + LRK53_RS08200 0.74 -1.1
1,847,679 + LRK53_RS08205 0.86 -0.7
1,847,679 + LRK53_RS08205 0.86 -0.8
1,847,680 - LRK53_RS08205 0.86 -1.6
1,847,782 - +1.9
1,847,782 - -0.8
1,847,782 - +0.4
1,847,782 - -2.4
1,847,788 + +0.2
1,847,789 - -0.8
1,847,789 - -0.6
1,847,789 - -1.2
1,847,789 - +1.2
1,847,825 + -1.6
1,847,826 - -0.6
1,847,826 - +0.2
1,847,826 - -0.8
1,847,832 + +1.2
1,847,833 - -0.8
1,847,839 + +0.1
1,847,840 - -0.8
1,847,840 - +0.8
1,847,840 - -1.0
1,847,840 - +0.2

Or see this region's nucleotide sequence