Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07795

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07790 and LRK53_RS07795 are separated by 179 nucleotidesLRK53_RS07795 and LRK53_RS07800 overlap by 4 nucleotidesLRK53_RS07800 and LRK53_RS07805 overlap by 4 nucleotides LRK53_RS07790: LRK53_RS07790 - GGDEF domain-containing protein, at 1,739,245 to 1,741,116 _RS07790 LRK53_RS07795: LRK53_RS07795 - GspH/FimT family pseudopilin, at 1,741,296 to 1,741,919 _RS07795 LRK53_RS07800: LRK53_RS07800 - type IV pilus modification protein PilV, at 1,741,916 to 1,742,398 _RS07800 LRK53_RS07805: LRK53_RS07805 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,742,395 to 1,743,447 _RS07805 Position (kb) 1741 1742Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1740.323 kb on + strand, within LRK53_RS07790at 1740.324 kb on - strand, within LRK53_RS07790at 1740.673 kb on + strand, within LRK53_RS07790at 1740.673 kb on + strand, within LRK53_RS07790at 1740.673 kb on + strand, within LRK53_RS07790at 1740.673 kb on + strand, within LRK53_RS07790at 1740.673 kb on + strand, within LRK53_RS07790at 1740.673 kb on + strand, within LRK53_RS07790at 1740.673 kb on + strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.674 kb on - strand, within LRK53_RS07790at 1740.797 kb on + strand, within LRK53_RS07790at 1740.797 kb on + strand, within LRK53_RS07790at 1740.797 kb on + strand, within LRK53_RS07790at 1740.798 kb on - strand, within LRK53_RS07790at 1740.798 kb on - strand, within LRK53_RS07790at 1740.798 kb on - strand, within LRK53_RS07790at 1741.005 kb on - strandat 1741.069 kb on + strandat 1741.069 kb on + strandat 1741.069 kb on + strandat 1741.069 kb on + strandat 1741.069 kb on + strandat 1741.070 kb on - strandat 1741.070 kb on - strandat 1741.070 kb on - strandat 1741.261 kb on + strandat 1741.261 kb on + strandat 1741.261 kb on + strandat 1741.261 kb on + strandat 1741.261 kb on + strandat 1741.261 kb on + strandat 1741.261 kb on + strandat 1741.261 kb on + strandat 1741.261 kb on + strandat 1741.262 kb on - strandat 1741.659 kb on + strand, within LRK53_RS07795at 1741.659 kb on + strand, within LRK53_RS07795at 1741.659 kb on + strand, within LRK53_RS07795at 1741.659 kb on + strand, within LRK53_RS07795at 1741.659 kb on + strand, within LRK53_RS07795at 1741.659 kb on + strand, within LRK53_RS07795at 1741.660 kb on - strand, within LRK53_RS07795at 1741.660 kb on - strand, within LRK53_RS07795at 1741.660 kb on - strand, within LRK53_RS07795at 1741.740 kb on - strand, within LRK53_RS07795at 1741.740 kb on - strand, within LRK53_RS07795at 1741.801 kb on - strand, within LRK53_RS07795at 1741.801 kb on - strand, within LRK53_RS07795at 1741.801 kb on - strand, within LRK53_RS07795at 1742.004 kb on + strand, within LRK53_RS07800at 1742.005 kb on - strand, within LRK53_RS07800at 1742.005 kb on - strand, within LRK53_RS07800at 1742.108 kb on + strand, within LRK53_RS07800at 1742.108 kb on + strand, within LRK53_RS07800at 1742.109 kb on - strand, within LRK53_RS07800at 1742.109 kb on - strand, within LRK53_RS07800at 1742.109 kb on - strand, within LRK53_RS07800at 1742.109 kb on - strand, within LRK53_RS07800at 1742.109 kb on - strand, within LRK53_RS07800at 1742.109 kb on - strand, within LRK53_RS07800at 1742.109 kb on - strand, within LRK53_RS07800at 1742.109 kb on - strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.162 kb on + strand, within LRK53_RS07800at 1742.163 kb on - strand, within LRK53_RS07800at 1742.163 kb on - strand, within LRK53_RS07800at 1742.163 kb on - strand, within LRK53_RS07800at 1742.163 kb on - strand, within LRK53_RS07800at 1742.163 kb on - strand, within LRK53_RS07800at 1742.163 kb on - strand, within LRK53_RS07800at 1742.163 kb on - strand, within LRK53_RS07800at 1742.163 kb on - strand, within LRK53_RS07800at 1742.163 kb on - strand, within LRK53_RS07800at 1742.163 kb on - strand, within LRK53_RS07800at 1742.163 kb on - strand, within LRK53_RS07800at 1742.310 kb on + strand, within LRK53_RS07800at 1742.311 kb on - strand, within LRK53_RS07800at 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.394 kb on + strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.554 kb on + strand, within LRK53_RS07805at 1742.554 kb on + strand, within LRK53_RS07805at 1742.555 kb on - strand, within LRK53_RS07805at 1742.555 kb on - strand, within LRK53_RS07805at 1742.555 kb on - strand, within LRK53_RS07805at 1742.555 kb on - strand, within LRK53_RS07805at 1742.555 kb on - strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.678 kb on + strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.679 kb on - strand, within LRK53_RS07805at 1742.734 kb on + strand, within LRK53_RS07805at 1742.734 kb on + strand, within LRK53_RS07805at 1742.734 kb on + strand, within LRK53_RS07805

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
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1,740,323 + LRK53_RS07790 0.58 -2.2
1,740,324 - LRK53_RS07790 0.58 -0.5
1,740,673 + LRK53_RS07790 0.76 -0.4
1,740,673 + LRK53_RS07790 0.76 -0.2
1,740,673 + LRK53_RS07790 0.76 -0.8
1,740,673 + LRK53_RS07790 0.76 +0.5
1,740,673 + LRK53_RS07790 0.76 -0.4
1,740,673 + LRK53_RS07790 0.76 -0.2
1,740,673 + LRK53_RS07790 0.76 +0.1
1,740,674 - LRK53_RS07790 0.76 +1.2
1,740,674 - LRK53_RS07790 0.76 -0.2
1,740,674 - LRK53_RS07790 0.76 -0.8
1,740,674 - LRK53_RS07790 0.76 -1.1
1,740,674 - LRK53_RS07790 0.76 -2.4
1,740,674 - LRK53_RS07790 0.76 -0.4
1,740,674 - LRK53_RS07790 0.76 -0.8
1,740,674 - LRK53_RS07790 0.76 -1.3
1,740,674 - LRK53_RS07790 0.76 +1.6
1,740,674 - LRK53_RS07790 0.76 +0.6
1,740,674 - LRK53_RS07790 0.76 -2.0
1,740,674 - LRK53_RS07790 0.76 -2.5
1,740,674 - LRK53_RS07790 0.76 -2.3
1,740,797 + LRK53_RS07790 0.83 +0.1
1,740,797 + LRK53_RS07790 0.83 +0.1
1,740,797 + LRK53_RS07790 0.83 -0.8
1,740,798 - LRK53_RS07790 0.83 +0.8
1,740,798 - LRK53_RS07790 0.83 -1.3
1,740,798 - LRK53_RS07790 0.83 -0.2
1,741,005 - +0.7
1,741,069 + -0.1
1,741,069 + +1.6
1,741,069 + -1.4
1,741,069 + -0.4
1,741,069 + -0.5
1,741,070 - -0.8
1,741,070 - -0.4
1,741,070 - +0.9
1,741,261 + +0.6
1,741,261 + +0.6
1,741,261 + +1.2
1,741,261 + -1.6
1,741,261 + +1.9
1,741,261 + -0.8
1,741,261 + -2.0
1,741,261 + -0.1
1,741,261 + +0.1
1,741,262 - -1.1
1,741,659 + LRK53_RS07795 0.58 -1.2
1,741,659 + LRK53_RS07795 0.58 -0.4
1,741,659 + LRK53_RS07795 0.58 -0.1
1,741,659 + LRK53_RS07795 0.58 -2.7
1,741,659 + LRK53_RS07795 0.58 -0.4
1,741,659 + LRK53_RS07795 0.58 -0.4
1,741,660 - LRK53_RS07795 0.58 -1.1
1,741,660 - LRK53_RS07795 0.58 +0.2
1,741,660 - LRK53_RS07795 0.58 -0.8
1,741,740 - LRK53_RS07795 0.71 -0.0
1,741,740 - LRK53_RS07795 0.71 -1.1
1,741,801 - LRK53_RS07795 0.81 +0.2
1,741,801 - LRK53_RS07795 0.81 -0.5
1,741,801 - LRK53_RS07795 0.81 -1.4
1,742,004 + LRK53_RS07800 0.18 +1.8
1,742,005 - LRK53_RS07800 0.18 +1.2
1,742,005 - LRK53_RS07800 0.18 +2.1
1,742,108 + LRK53_RS07800 0.40 +0.2
1,742,108 + LRK53_RS07800 0.40 -0.0
1,742,109 - LRK53_RS07800 0.40 -0.4
1,742,109 - LRK53_RS07800 0.40 +1.8
1,742,109 - LRK53_RS07800 0.40 -1.6
1,742,109 - LRK53_RS07800 0.40 +1.2
1,742,109 - LRK53_RS07800 0.40 +0.8
1,742,109 - LRK53_RS07800 0.40 -0.1
1,742,109 - LRK53_RS07800 0.40 -1.7
1,742,109 - LRK53_RS07800 0.40 -0.4
1,742,162 + LRK53_RS07800 0.51 +0.2
1,742,162 + LRK53_RS07800 0.51 -0.8
1,742,162 + LRK53_RS07800 0.51 -1.7
1,742,162 + LRK53_RS07800 0.51 -0.2
1,742,162 + LRK53_RS07800 0.51 -0.1
1,742,162 + LRK53_RS07800 0.51 -1.8
1,742,162 + LRK53_RS07800 0.51 +1.2
1,742,162 + LRK53_RS07800 0.51 -1.4
1,742,162 + LRK53_RS07800 0.51 +0.4
1,742,162 + LRK53_RS07800 0.51 -0.8
1,742,162 + LRK53_RS07800 0.51 -0.4
1,742,162 + LRK53_RS07800 0.51 -0.4
1,742,163 - LRK53_RS07800 0.51 -0.8
1,742,163 - LRK53_RS07800 0.51 -0.6
1,742,163 - LRK53_RS07800 0.51 -0.7
1,742,163 - LRK53_RS07800 0.51 -0.4
1,742,163 - LRK53_RS07800 0.51 +0.2
1,742,163 - LRK53_RS07800 0.51 -0.4
1,742,163 - LRK53_RS07800 0.51 -0.8
1,742,163 - LRK53_RS07800 0.51 +0.2
1,742,163 - LRK53_RS07800 0.51 -0.6
1,742,163 - LRK53_RS07800 0.51 +0.7
1,742,163 - LRK53_RS07800 0.51 -0.6
1,742,310 + LRK53_RS07800 0.82 -0.4
1,742,311 - LRK53_RS07800 0.82 -0.7
1,742,394 + +0.2
1,742,394 + -0.1
1,742,394 + -1.8
1,742,394 + -2.0
1,742,394 + -1.0
1,742,394 + -2.5
1,742,394 + -0.8
1,742,394 + -1.5
1,742,394 + -0.4
1,742,394 + -1.9
1,742,394 + -0.8
1,742,394 + -1.4
1,742,394 + -0.4
1,742,394 + +1.2
1,742,394 + -1.6
1,742,394 + +2.8
1,742,395 - -0.8
1,742,395 - -0.8
1,742,395 - -0.6
1,742,395 - +0.0
1,742,395 - -1.7
1,742,395 - +0.3
1,742,395 - -0.6
1,742,395 - -0.8
1,742,395 - -2.4
1,742,395 - -0.8
1,742,395 - -0.5
1,742,395 - +0.2
1,742,395 - +1.2
1,742,395 - +1.2
1,742,554 + LRK53_RS07805 0.15 -1.0
1,742,554 + LRK53_RS07805 0.15 -0.4
1,742,555 - LRK53_RS07805 0.15 -1.1
1,742,555 - LRK53_RS07805 0.15 -0.8
1,742,555 - LRK53_RS07805 0.15 -2.0
1,742,555 - LRK53_RS07805 0.15 -1.6
1,742,555 - LRK53_RS07805 0.15 +1.2
1,742,678 + LRK53_RS07805 0.27 -0.4
1,742,678 + LRK53_RS07805 0.27 -1.1
1,742,678 + LRK53_RS07805 0.27 -0.4
1,742,678 + LRK53_RS07805 0.27 -0.4
1,742,678 + LRK53_RS07805 0.27 -2.0
1,742,678 + LRK53_RS07805 0.27 -1.6
1,742,678 + LRK53_RS07805 0.27 +0.2
1,742,678 + LRK53_RS07805 0.27 -0.0
1,742,678 + LRK53_RS07805 0.27 +0.8
1,742,678 + LRK53_RS07805 0.27 -0.4
1,742,678 + LRK53_RS07805 0.27 -1.2
1,742,678 + LRK53_RS07805 0.27 -1.1
1,742,678 + LRK53_RS07805 0.27 +1.5
1,742,678 + LRK53_RS07805 0.27 -1.4
1,742,678 + LRK53_RS07805 0.27 -0.8
1,742,678 + LRK53_RS07805 0.27 -1.7
1,742,678 + LRK53_RS07805 0.27 -2.4
1,742,678 + LRK53_RS07805 0.27 +1.8
1,742,678 + LRK53_RS07805 0.27 +1.2
1,742,679 - LRK53_RS07805 0.27 -0.5
1,742,679 - LRK53_RS07805 0.27 -0.6
1,742,679 - LRK53_RS07805 0.27 +3.0
1,742,679 - LRK53_RS07805 0.27 -2.7
1,742,679 - LRK53_RS07805 0.27 +0.6
1,742,679 - LRK53_RS07805 0.27 -0.4
1,742,679 - LRK53_RS07805 0.27 -2.2
1,742,679 - LRK53_RS07805 0.27 -1.4
1,742,679 - LRK53_RS07805 0.27 -0.4
1,742,679 - LRK53_RS07805 0.27 -0.6
1,742,679 - LRK53_RS07805 0.27 +1.2
1,742,679 - LRK53_RS07805 0.27 -0.6
1,742,679 - LRK53_RS07805 0.27 +1.2
1,742,679 - LRK53_RS07805 0.27 +0.2
1,742,734 + LRK53_RS07805 0.32 +0.2
1,742,734 + LRK53_RS07805 0.32 -0.8
1,742,734 + LRK53_RS07805 0.32 -1.1

Or see this region's nucleotide sequence