Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01660

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01650 and LRK53_RS01655 are separated by 251 nucleotidesLRK53_RS01655 and LRK53_RS01660 are separated by 129 nucleotidesLRK53_RS01660 and LRK53_RS01665 are separated by 176 nucleotides LRK53_RS01650: LRK53_RS01650 - chaperonin GroEL, at 388,288 to 389,937 _RS01650 LRK53_RS01655: LRK53_RS01655 - hypothetical protein, at 390,189 to 390,332 _RS01655 LRK53_RS01660: LRK53_RS01660 - hypothetical protein, at 390,462 to 390,995 _RS01660 LRK53_RS01665: LRK53_RS01665 - LTA synthase family protein, at 391,172 to 393,061 _RS01665 Position (kb) 390 391Strain fitness (log2 ratio) -2 -1 0 1 2at 390.081 kb on - strandat 390.081 kb on - strandat 390.246 kb on - strand, within LRK53_RS01655at 390.282 kb on + strand, within LRK53_RS01655at 390.282 kb on + strand, within LRK53_RS01655at 390.283 kb on - strand, within LRK53_RS01655at 390.290 kb on + strand, within LRK53_RS01655at 390.290 kb on + strand, within LRK53_RS01655at 390.290 kb on + strand, within LRK53_RS01655at 390.291 kb on - strand, within LRK53_RS01655at 390.291 kb on - strand, within LRK53_RS01655at 390.291 kb on - strand, within LRK53_RS01655at 390.291 kb on - strand, within LRK53_RS01655at 390.291 kb on - strand, within LRK53_RS01655at 390.296 kb on + strand, within LRK53_RS01655at 390.296 kb on + strand, within LRK53_RS01655at 390.297 kb on - strand, within LRK53_RS01655at 390.297 kb on - strand, within LRK53_RS01655at 390.297 kb on - strand, within LRK53_RS01655at 390.297 kb on - strand, within LRK53_RS01655at 390.297 kb on - strand, within LRK53_RS01655at 390.337 kb on + strandat 390.337 kb on + strandat 390.337 kb on + strandat 390.337 kb on + strandat 390.337 kb on + strandat 390.337 kb on + strandat 390.337 kb on + strandat 390.338 kb on - strandat 390.338 kb on - strandat 390.338 kb on - strandat 390.338 kb on - strandat 390.407 kb on + strandat 390.407 kb on + strandat 390.407 kb on + strandat 390.407 kb on + strandat 390.407 kb on + strandat 390.407 kb on + strandat 390.407 kb on + strandat 390.408 kb on - strandat 390.408 kb on - strandat 390.408 kb on - strandat 390.408 kb on - strandat 390.408 kb on - strandat 390.408 kb on - strandat 390.408 kb on - strandat 390.408 kb on - strandat 390.408 kb on - strandat 390.408 kb on - strandat 390.408 kb on - strandat 390.795 kb on + strand, within LRK53_RS01660at 390.796 kb on - strand, within LRK53_RS01660at 390.796 kb on - strand, within LRK53_RS01660at 390.796 kb on - strand, within LRK53_RS01660at 390.796 kb on - strand, within LRK53_RS01660at 390.951 kb on + strandat 390.951 kb on + strandat 390.951 kb on + strandat 390.951 kb on + strandat 390.951 kb on + strandat 390.951 kb on + strandat 390.952 kb on - strandat 390.952 kb on - strandat 390.952 kb on - strandat 390.952 kb on - strandat 390.952 kb on - strandat 391.069 kb on + strandat 391.070 kb on - strandat 391.070 kb on - strandat 391.070 kb on - strandat 391.070 kb on - strandat 391.410 kb on + strand, within LRK53_RS01665at 391.410 kb on + strand, within LRK53_RS01665at 391.410 kb on + strand, within LRK53_RS01665at 391.411 kb on - strand, within LRK53_RS01665at 391.411 kb on - strand, within LRK53_RS01665at 391.411 kb on - strand, within LRK53_RS01665at 391.572 kb on + strand, within LRK53_RS01665at 391.572 kb on + strand, within LRK53_RS01665at 391.572 kb on + strand, within LRK53_RS01665at 391.572 kb on + strand, within LRK53_RS01665at 391.572 kb on + strand, within LRK53_RS01665at 391.573 kb on - strand, within LRK53_RS01665at 391.573 kb on - strand, within LRK53_RS01665at 391.573 kb on - strand, within LRK53_RS01665at 391.573 kb on - strand, within LRK53_RS01665at 391.573 kb on - strand, within LRK53_RS01665at 391.573 kb on - strand, within LRK53_RS01665at 391.605 kb on + strand, within LRK53_RS01665at 391.605 kb on + strand, within LRK53_RS01665at 391.605 kb on + strand, within LRK53_RS01665at 391.606 kb on - strand, within LRK53_RS01665at 391.606 kb on - strand, within LRK53_RS01665at 391.606 kb on - strand, within LRK53_RS01665at 391.606 kb on - strand, within LRK53_RS01665at 391.606 kb on - strand, within LRK53_RS01665at 391.689 kb on + strand, within LRK53_RS01665at 391.689 kb on + strand, within LRK53_RS01665at 391.689 kb on + strand, within LRK53_RS01665at 391.689 kb on + strand, within LRK53_RS01665at 391.689 kb on + strand, within LRK53_RS01665at 391.689 kb on + strand, within LRK53_RS01665at 391.689 kb on + strand, within LRK53_RS01665at 391.689 kb on + strand, within LRK53_RS01665at 391.689 kb on + strand, within LRK53_RS01665at 391.689 kb on + strand, within LRK53_RS01665at 391.689 kb on + strand, within LRK53_RS01665at 391.690 kb on - strand, within LRK53_RS01665at 391.690 kb on - strand, within LRK53_RS01665at 391.690 kb on - strand, within LRK53_RS01665at 391.690 kb on - strand, within LRK53_RS01665at 391.690 kb on - strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.695 kb on + strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.696 kb on - strand, within LRK53_RS01665at 391.785 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.887 kb on + strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665at 391.888 kb on - strand, within LRK53_RS01665

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
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390,081 - +1.4
390,081 - -1.2
390,246 - LRK53_RS01655 0.40 -1.3
390,282 + LRK53_RS01655 0.65 -0.0
390,282 + LRK53_RS01655 0.65 -0.6
390,283 - LRK53_RS01655 0.65 -1.0
390,290 + LRK53_RS01655 0.70 -0.2
390,290 + LRK53_RS01655 0.70 +0.1
390,290 + LRK53_RS01655 0.70 +0.2
390,291 - LRK53_RS01655 0.71 +0.4
390,291 - LRK53_RS01655 0.71 -0.2
390,291 - LRK53_RS01655 0.71 -0.2
390,291 - LRK53_RS01655 0.71 -0.1
390,291 - LRK53_RS01655 0.71 -2.5
390,296 + LRK53_RS01655 0.74 +0.4
390,296 + LRK53_RS01655 0.74 +0.4
390,297 - LRK53_RS01655 0.75 -1.0
390,297 - LRK53_RS01655 0.75 +0.0
390,297 - LRK53_RS01655 0.75 +1.4
390,297 - LRK53_RS01655 0.75 +1.4
390,297 - LRK53_RS01655 0.75 -0.6
390,337 + -0.6
390,337 + +0.6
390,337 + -1.4
390,337 + +1.4
390,337 + -1.2
390,337 + -0.0
390,337 + +0.4
390,338 - -0.2
390,338 - -1.2
390,338 - -0.6
390,338 - +1.4
390,407 + -0.0
390,407 + +0.4
390,407 + +1.4
390,407 + +1.4
390,407 + -1.0
390,407 + -0.7
390,407 + -1.6
390,408 - -1.4
390,408 - -2.2
390,408 - +1.4
390,408 - +2.2
390,408 - +1.4
390,408 - +0.6
390,408 - +2.0
390,408 - -0.5
390,408 - +0.1
390,408 - -0.2
390,408 - +1.0
390,795 + LRK53_RS01660 0.62 -1.0
390,796 - LRK53_RS01660 0.63 -0.6
390,796 - LRK53_RS01660 0.63 -2.3
390,796 - LRK53_RS01660 0.63 -0.1
390,796 - LRK53_RS01660 0.63 -1.3
390,951 + +0.3
390,951 + -1.2
390,951 + +1.0
390,951 + +1.0
390,951 + -0.0
390,951 + +1.4
390,952 - -0.1
390,952 - +0.4
390,952 - -1.0
390,952 - -0.2
390,952 - +0.0
391,069 + +1.4
391,070 - +1.4
391,070 - -1.6
391,070 - -0.1
391,070 - +1.4
391,410 + LRK53_RS01665 0.13 +0.4
391,410 + LRK53_RS01665 0.13 -1.0
391,410 + LRK53_RS01665 0.13 +1.2
391,411 - LRK53_RS01665 0.13 -1.7
391,411 - LRK53_RS01665 0.13 -0.6
391,411 - LRK53_RS01665 0.13 -0.6
391,572 + LRK53_RS01665 0.21 +1.4
391,572 + LRK53_RS01665 0.21 -0.6
391,572 + LRK53_RS01665 0.21 +0.1
391,572 + LRK53_RS01665 0.21 +1.4
391,572 + LRK53_RS01665 0.21 +0.8
391,573 - LRK53_RS01665 0.21 +1.0
391,573 - LRK53_RS01665 0.21 -0.6
391,573 - LRK53_RS01665 0.21 -0.5
391,573 - LRK53_RS01665 0.21 -1.0
391,573 - LRK53_RS01665 0.21 +0.8
391,573 - LRK53_RS01665 0.21 +1.0
391,605 + LRK53_RS01665 0.23 -2.0
391,605 + LRK53_RS01665 0.23 -1.6
391,605 + LRK53_RS01665 0.23 -1.4
391,606 - LRK53_RS01665 0.23 +1.4
391,606 - LRK53_RS01665 0.23 -0.6
391,606 - LRK53_RS01665 0.23 -1.1
391,606 - LRK53_RS01665 0.23 +2.1
391,606 - LRK53_RS01665 0.23 +0.3
391,689 + LRK53_RS01665 0.27 +0.4
391,689 + LRK53_RS01665 0.27 -2.2
391,689 + LRK53_RS01665 0.27 +1.4
391,689 + LRK53_RS01665 0.27 -1.7
391,689 + LRK53_RS01665 0.27 -0.5
391,689 + LRK53_RS01665 0.27 +1.4
391,689 + LRK53_RS01665 0.27 -0.2
391,689 + LRK53_RS01665 0.27 +1.4
391,689 + LRK53_RS01665 0.27 -0.2
391,689 + LRK53_RS01665 0.27 +1.4
391,689 + LRK53_RS01665 0.27 -1.2
391,690 - LRK53_RS01665 0.27 -1.3
391,690 - LRK53_RS01665 0.27 +0.8
391,690 - LRK53_RS01665 0.27 -1.0
391,690 - LRK53_RS01665 0.27 -1.2
391,690 - LRK53_RS01665 0.27 -0.6
391,695 + LRK53_RS01665 0.28 +1.4
391,695 + LRK53_RS01665 0.28 -2.0
391,695 + LRK53_RS01665 0.28 -1.1
391,695 + LRK53_RS01665 0.28 -1.9
391,695 + LRK53_RS01665 0.28 +0.0
391,695 + LRK53_RS01665 0.28 -0.6
391,695 + LRK53_RS01665 0.28 -1.0
391,695 + LRK53_RS01665 0.28 -0.4
391,695 + LRK53_RS01665 0.28 +0.6
391,695 + LRK53_RS01665 0.28 -0.2
391,695 + LRK53_RS01665 0.28 -0.4
391,695 + LRK53_RS01665 0.28 +2.0
391,695 + LRK53_RS01665 0.28 +2.4
391,695 + LRK53_RS01665 0.28 +0.4
391,695 + LRK53_RS01665 0.28 +0.0
391,695 + LRK53_RS01665 0.28 -0.0
391,695 + LRK53_RS01665 0.28 -1.0
391,696 - LRK53_RS01665 0.28 -1.8
391,696 - LRK53_RS01665 0.28 +1.4
391,696 - LRK53_RS01665 0.28 -0.0
391,696 - LRK53_RS01665 0.28 +0.0
391,696 - LRK53_RS01665 0.28 +1.4
391,696 - LRK53_RS01665 0.28 -1.4
391,696 - LRK53_RS01665 0.28 -0.6
391,696 - LRK53_RS01665 0.28 -1.7
391,696 - LRK53_RS01665 0.28 -1.2
391,696 - LRK53_RS01665 0.28 -0.2
391,696 - LRK53_RS01665 0.28 -0.6
391,696 - LRK53_RS01665 0.28 -0.6
391,696 - LRK53_RS01665 0.28 -1.2
391,785 + LRK53_RS01665 0.32 -1.0
391,887 + LRK53_RS01665 0.38 -0.6
391,887 + LRK53_RS01665 0.38 -1.4
391,887 + LRK53_RS01665 0.38 +0.4
391,887 + LRK53_RS01665 0.38 -1.3
391,887 + LRK53_RS01665 0.38 +1.4
391,887 + LRK53_RS01665 0.38 -1.1
391,887 + LRK53_RS01665 0.38 +1.4
391,887 + LRK53_RS01665 0.38 +0.6
391,887 + LRK53_RS01665 0.38 -1.0
391,887 + LRK53_RS01665 0.38 +0.4
391,887 + LRK53_RS01665 0.38 +0.4
391,887 + LRK53_RS01665 0.38 -0.4
391,887 + LRK53_RS01665 0.38 -0.6
391,887 + LRK53_RS01665 0.38 -2.3
391,887 + LRK53_RS01665 0.38 -2.0
391,887 + LRK53_RS01665 0.38 +1.4
391,887 + LRK53_RS01665 0.38 -0.2
391,887 + LRK53_RS01665 0.38 -1.4
391,887 + LRK53_RS01665 0.38 +1.4
391,887 + LRK53_RS01665 0.38 -1.8
391,887 + LRK53_RS01665 0.38 +0.0
391,887 + LRK53_RS01665 0.38 -1.4
391,887 + LRK53_RS01665 0.38 +1.1
391,887 + LRK53_RS01665 0.38 -1.6
391,887 + LRK53_RS01665 0.38 -0.2
391,887 + LRK53_RS01665 0.38 +1.4
391,888 - LRK53_RS01665 0.38 -0.3
391,888 - LRK53_RS01665 0.38 +1.4
391,888 - LRK53_RS01665 0.38 -2.0
391,888 - LRK53_RS01665 0.38 +1.4
391,888 - LRK53_RS01665 0.38 -2.0
391,888 - LRK53_RS01665 0.38 +1.0
391,888 - LRK53_RS01665 0.38 -1.0
391,888 - LRK53_RS01665 0.38 +0.4
391,888 - LRK53_RS01665 0.38 -1.7
391,888 - LRK53_RS01665 0.38 -0.1
391,888 - LRK53_RS01665 0.38 +2.7
391,888 - LRK53_RS01665 0.38 -0.2
391,888 - LRK53_RS01665 0.38 -1.6
391,888 - LRK53_RS01665 0.38 -1.4
391,888 - LRK53_RS01665 0.38 -0.0
391,888 - LRK53_RS01665 0.38 +0.4
391,888 - LRK53_RS01665 0.38 +0.4
391,888 - LRK53_RS01665 0.38 -1.4
391,888 - LRK53_RS01665 0.38 +0.1
391,888 - LRK53_RS01665 0.38 +1.4
391,888 - LRK53_RS01665 0.38 -1.0
391,888 - LRK53_RS01665 0.38 -0.1
391,888 - LRK53_RS01665 0.38 +1.4
391,888 - LRK53_RS01665 0.38 -2.0
391,888 - LRK53_RS01665 0.38 -1.8
391,888 - LRK53_RS01665 0.38 -1.5
391,888 - LRK53_RS01665 0.38 -0.2
391,888 - LRK53_RS01665 0.38 -0.2
391,888 - LRK53_RS01665 0.38 -1.2

Or see this region's nucleotide sequence