Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01235

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01225 and LRK53_RS01230 are separated by 20 nucleotidesLRK53_RS01230 and LRK53_RS01235 are separated by 288 nucleotidesLRK53_RS01235 and LRK53_RS01240 are separated by 219 nucleotides LRK53_RS01225: LRK53_RS01225 - ATP-binding protein, at 300,970 to 301,800 _RS01225 LRK53_RS01230: LRK53_RS01230 - hypothetical protein, at 301,821 to 302,126 _RS01230 LRK53_RS01235: LRK53_RS01235 - monovalent cation:proton antiporter-2 (CPA2) family protein, at 302,415 to 304,250 _RS01235 LRK53_RS01240: LRK53_RS01240 - ankyrin repeat domain-containing protein, at 304,470 to 307,910 _RS01240 Position (kb) 302 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 301.444 kb on + strand, within LRK53_RS01225at 301.444 kb on + strand, within LRK53_RS01225at 301.445 kb on - strand, within LRK53_RS01225at 301.445 kb on - strand, within LRK53_RS01225at 301.445 kb on - strand, within LRK53_RS01225at 301.445 kb on - strand, within LRK53_RS01225at 301.445 kb on - strand, within LRK53_RS01225at 301.445 kb on - strand, within LRK53_RS01225at 301.447 kb on + strand, within LRK53_RS01225at 301.447 kb on + strand, within LRK53_RS01225at 301.447 kb on + strand, within LRK53_RS01225at 301.447 kb on + strand, within LRK53_RS01225at 301.447 kb on + strand, within LRK53_RS01225at 301.447 kb on + strand, within LRK53_RS01225at 301.447 kb on + strand, within LRK53_RS01225at 301.447 kb on + strand, within LRK53_RS01225at 301.447 kb on + strand, within LRK53_RS01225at 301.447 kb on + strand, within LRK53_RS01225at 301.448 kb on - strand, within LRK53_RS01225at 301.448 kb on - strand, within LRK53_RS01225at 301.448 kb on - strand, within LRK53_RS01225at 301.448 kb on - strand, within LRK53_RS01225at 301.448 kb on - strand, within LRK53_RS01225at 301.448 kb on - strand, within LRK53_RS01225at 301.448 kb on - strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.579 kb on + strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.580 kb on - strand, within LRK53_RS01225at 301.616 kb on + strand, within LRK53_RS01225at 301.616 kb on + strand, within LRK53_RS01225at 301.616 kb on + strand, within LRK53_RS01225at 301.616 kb on + strand, within LRK53_RS01225at 301.616 kb on + strand, within LRK53_RS01225at 301.617 kb on - strand, within LRK53_RS01225at 301.712 kb on + strand, within LRK53_RS01225at 301.712 kb on + strand, within LRK53_RS01225at 301.712 kb on + strand, within LRK53_RS01225at 301.712 kb on + strand, within LRK53_RS01225at 301.712 kb on + strand, within LRK53_RS01225at 301.712 kb on + strand, within LRK53_RS01225at 301.712 kb on + strand, within LRK53_RS01225at 301.713 kb on - strand, within LRK53_RS01225at 301.713 kb on - strand, within LRK53_RS01225at 301.713 kb on - strand, within LRK53_RS01225at 301.713 kb on - strand, within LRK53_RS01225at 301.713 kb on - strand, within LRK53_RS01225at 301.713 kb on - strand, within LRK53_RS01225at 301.738 kb on - strandat 301.759 kb on + strandat 301.759 kb on + strandat 301.759 kb on + strandat 301.759 kb on + strandat 301.760 kb on - strandat 301.760 kb on - strandat 301.760 kb on - strandat 301.760 kb on - strandat 301.760 kb on - strandat 301.760 kb on - strandat 301.851 kb on + strandat 301.852 kb on - strand, within LRK53_RS01230at 301.852 kb on - strand, within LRK53_RS01230at 301.966 kb on + strand, within LRK53_RS01230at 301.966 kb on + strand, within LRK53_RS01230at 301.967 kb on - strand, within LRK53_RS01230at 301.967 kb on - strand, within LRK53_RS01230at 301.967 kb on - strand, within LRK53_RS01230at 302.083 kb on - strand, within LRK53_RS01230at 302.169 kb on - strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.170 kb on + strandat 302.171 kb on - strandat 302.171 kb on - strandat 302.171 kb on - strandat 302.171 kb on - strandat 302.171 kb on - strandat 302.171 kb on - strandat 302.171 kb on - strandat 302.171 kb on - strandat 302.171 kb on - strandat 302.171 kb on - strandat 302.192 kb on + strandat 302.192 kb on + strandat 302.192 kb on + strandat 302.192 kb on + strandat 302.192 kb on + strandat 302.193 kb on - strandat 302.193 kb on - strandat 302.193 kb on - strandat 302.193 kb on - strandat 302.193 kb on - strandat 302.193 kb on - strandat 302.241 kb on + strandat 302.241 kb on + strandat 302.241 kb on + strandat 302.242 kb on - strandat 302.242 kb on - strandat 302.283 kb on + strandat 302.283 kb on + strandat 302.284 kb on - strandat 302.284 kb on - strandat 302.311 kb on - strandat 302.733 kb on + strand, within LRK53_RS01235at 302.733 kb on + strand, within LRK53_RS01235at 302.733 kb on + strand, within LRK53_RS01235at 302.734 kb on - strand, within LRK53_RS01235at 302.734 kb on - strand, within LRK53_RS01235at 302.995 kb on + strand, within LRK53_RS01235at 304.069 kb on - strandat 304.104 kb on + strandat 304.105 kb on - strandat 304.248 kb on + strandat 304.312 kb on + strandat 304.312 kb on + strandat 304.313 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
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301,444 + LRK53_RS01225 0.57 +1.4
301,444 + LRK53_RS01225 0.57 +1.4
301,445 - LRK53_RS01225 0.57 +1.4
301,445 - LRK53_RS01225 0.57 -0.6
301,445 - LRK53_RS01225 0.57 -1.4
301,445 - LRK53_RS01225 0.57 +0.2
301,445 - LRK53_RS01225 0.57 -2.2
301,445 - LRK53_RS01225 0.57 -0.2
301,447 + LRK53_RS01225 0.57 -0.9
301,447 + LRK53_RS01225 0.57 +0.2
301,447 + LRK53_RS01225 0.57 -0.8
301,447 + LRK53_RS01225 0.57 +1.4
301,447 + LRK53_RS01225 0.57 -1.4
301,447 + LRK53_RS01225 0.57 +0.4
301,447 + LRK53_RS01225 0.57 +0.4
301,447 + LRK53_RS01225 0.57 -1.1
301,447 + LRK53_RS01225 0.57 +2.4
301,447 + LRK53_RS01225 0.57 +1.0
301,448 - LRK53_RS01225 0.58 +2.0
301,448 - LRK53_RS01225 0.58 -0.4
301,448 - LRK53_RS01225 0.58 -0.2
301,448 - LRK53_RS01225 0.58 +1.4
301,448 - LRK53_RS01225 0.58 +0.4
301,448 - LRK53_RS01225 0.58 +1.0
301,448 - LRK53_RS01225 0.58 +0.6
301,579 + LRK53_RS01225 0.73 -0.6
301,579 + LRK53_RS01225 0.73 +0.4
301,579 + LRK53_RS01225 0.73 -0.9
301,579 + LRK53_RS01225 0.73 -0.6
301,579 + LRK53_RS01225 0.73 -1.7
301,579 + LRK53_RS01225 0.73 -0.6
301,579 + LRK53_RS01225 0.73 -1.4
301,579 + LRK53_RS01225 0.73 -1.9
301,579 + LRK53_RS01225 0.73 +1.4
301,579 + LRK53_RS01225 0.73 -0.1
301,579 + LRK53_RS01225 0.73 +0.5
301,579 + LRK53_RS01225 0.73 +0.2
301,579 + LRK53_RS01225 0.73 -0.9
301,579 + LRK53_RS01225 0.73 -1.2
301,579 + LRK53_RS01225 0.73 +1.7
301,579 + LRK53_RS01225 0.73 -0.4
301,579 + LRK53_RS01225 0.73 +0.4
301,579 + LRK53_RS01225 0.73 +0.4
301,579 + LRK53_RS01225 0.73 +0.7
301,579 + LRK53_RS01225 0.73 -0.6
301,579 + LRK53_RS01225 0.73 +0.8
301,580 - LRK53_RS01225 0.73 -0.4
301,580 - LRK53_RS01225 0.73 +1.4
301,580 - LRK53_RS01225 0.73 +0.8
301,580 - LRK53_RS01225 0.73 +1.4
301,580 - LRK53_RS01225 0.73 +0.4
301,580 - LRK53_RS01225 0.73 -0.2
301,580 - LRK53_RS01225 0.73 -1.9
301,580 - LRK53_RS01225 0.73 -0.1
301,580 - LRK53_RS01225 0.73 +0.8
301,580 - LRK53_RS01225 0.73 +0.8
301,580 - LRK53_RS01225 0.73 -0.5
301,580 - LRK53_RS01225 0.73 +0.1
301,616 + LRK53_RS01225 0.78 -0.9
301,616 + LRK53_RS01225 0.78 +0.6
301,616 + LRK53_RS01225 0.78 -0.6
301,616 + LRK53_RS01225 0.78 +0.4
301,616 + LRK53_RS01225 0.78 -0.8
301,617 - LRK53_RS01225 0.78 -0.2
301,712 + LRK53_RS01225 0.89 -1.2
301,712 + LRK53_RS01225 0.89 -0.5
301,712 + LRK53_RS01225 0.89 +0.6
301,712 + LRK53_RS01225 0.89 -0.1
301,712 + LRK53_RS01225 0.89 -0.4
301,712 + LRK53_RS01225 0.89 -3.5
301,712 + LRK53_RS01225 0.89 +0.4
301,713 - LRK53_RS01225 0.89 -1.2
301,713 - LRK53_RS01225 0.89 +1.4
301,713 - LRK53_RS01225 0.89 -0.2
301,713 - LRK53_RS01225 0.89 +1.4
301,713 - LRK53_RS01225 0.89 +0.4
301,713 - LRK53_RS01225 0.89 -1.1
301,738 - +0.4
301,759 + +0.2
301,759 + -0.9
301,759 + +2.4
301,759 + -0.2
301,760 - +0.8
301,760 - +0.4
301,760 - +0.3
301,760 - -0.0
301,760 - +0.2
301,760 - +1.4
301,851 + -0.2
301,852 - LRK53_RS01230 0.10 -0.0
301,852 - LRK53_RS01230 0.10 +0.4
301,966 + LRK53_RS01230 0.47 -1.4
301,966 + LRK53_RS01230 0.47 -0.7
301,967 - LRK53_RS01230 0.48 +0.2
301,967 - LRK53_RS01230 0.48 -1.1
301,967 - LRK53_RS01230 0.48 +1.4
302,083 - LRK53_RS01230 0.86 -0.8
302,169 - +1.4
302,170 + -0.4
302,170 + -0.2
302,170 + +0.5
302,170 + +0.8
302,170 + +0.8
302,170 + +0.0
302,170 + -0.2
302,170 + +1.4
302,170 + -0.9
302,170 + -0.7
302,170 + +1.4
302,170 + +3.0
302,170 + +0.1
302,170 + -0.9
302,170 + -0.1
302,170 + -0.8
302,171 - +0.8
302,171 - +1.0
302,171 - +0.8
302,171 - -0.4
302,171 - -1.3
302,171 - +1.0
302,171 - +0.4
302,171 - +0.1
302,171 - -0.0
302,171 - -1.2
302,192 + +0.4
302,192 + -0.2
302,192 + -0.6
302,192 + -0.1
302,192 + +0.8
302,193 - -0.6
302,193 - -1.4
302,193 - -0.2
302,193 - +1.4
302,193 - +0.4
302,193 - +0.4
302,241 + +0.2
302,241 + -0.2
302,241 + -0.5
302,242 - -1.6
302,242 - -0.4
302,283 + +0.4
302,283 + -0.7
302,284 - -0.2
302,284 - -0.4
302,311 - -0.4
302,733 + LRK53_RS01235 0.17 -0.4
302,733 + LRK53_RS01235 0.17 -1.4
302,733 + LRK53_RS01235 0.17 +1.4
302,734 - LRK53_RS01235 0.17 +0.4
302,734 - LRK53_RS01235 0.17 -0.9
302,995 + LRK53_RS01235 0.32 -1.2
304,069 - +1.4
304,104 + +3.0
304,105 - +0.6
304,248 + +2.4
304,312 + -0.2
304,312 + -0.9
304,313 - -1.4

Or see this region's nucleotide sequence