Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18255

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18250 and LRK53_RS18255 are separated by 9 nucleotidesLRK53_RS18255 and LRK53_RS18260 overlap by 4 nucleotidesLRK53_RS18260 and LRK53_RS18265 are separated by 63 nucleotides LRK53_RS18250: LRK53_RS18250 - conjugative transfer system coupling protein TraD, at 27,969 to 29,876 _RS18250 LRK53_RS18255: LRK53_RS18255 - hypothetical protein, at 29,886 to 30,446 _RS18255 LRK53_RS18260: LRK53_RS18260 - DUF4400 domain-containing protein, at 30,443 to 31,096 _RS18260 LRK53_RS18265: LRK53_RS18265 - hypothetical protein, at 31,160 to 31,423 _RS18265 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.974 kb on + strand, within LRK53_RS18250at 28.975 kb on - strand, within LRK53_RS18250at 28.975 kb on - strand, within LRK53_RS18250at 28.975 kb on - strand, within LRK53_RS18250at 28.975 kb on - strand, within LRK53_RS18250at 28.975 kb on - strand, within LRK53_RS18250at 28.975 kb on - strand, within LRK53_RS18250at 28.975 kb on - strand, within LRK53_RS18250at 28.975 kb on - strand, within LRK53_RS18250at 28.977 kb on + strand, within LRK53_RS18250at 28.977 kb on + strand, within LRK53_RS18250at 28.977 kb on + strand, within LRK53_RS18250at 28.977 kb on + strand, within LRK53_RS18250at 28.977 kb on + strand, within LRK53_RS18250at 28.977 kb on + strand, within LRK53_RS18250at 28.978 kb on - strand, within LRK53_RS18250at 28.978 kb on - strand, within LRK53_RS18250at 28.978 kb on - strand, within LRK53_RS18250at 28.978 kb on - strand, within LRK53_RS18250at 28.978 kb on - strand, within LRK53_RS18250at 29.301 kb on + strand, within LRK53_RS18250at 29.301 kb on + strand, within LRK53_RS18250at 29.301 kb on + strand, within LRK53_RS18250at 29.301 kb on + strand, within LRK53_RS18250at 29.301 kb on + strand, within LRK53_RS18250at 29.302 kb on - strand, within LRK53_RS18250at 29.302 kb on - strand, within LRK53_RS18250at 29.302 kb on - strand, within LRK53_RS18250at 29.302 kb on - strand, within LRK53_RS18250at 29.307 kb on + strand, within LRK53_RS18250at 29.307 kb on + strand, within LRK53_RS18250at 29.307 kb on + strand, within LRK53_RS18250at 29.307 kb on + strand, within LRK53_RS18250at 29.308 kb on - strand, within LRK53_RS18250at 29.308 kb on - strand, within LRK53_RS18250at 29.308 kb on - strand, within LRK53_RS18250at 29.308 kb on - strand, within LRK53_RS18250at 29.534 kb on + strand, within LRK53_RS18250at 29.616 kb on + strand, within LRK53_RS18250at 29.616 kb on + strand, within LRK53_RS18250at 29.616 kb on + strand, within LRK53_RS18250at 29.616 kb on + strand, within LRK53_RS18250at 29.616 kb on + strand, within LRK53_RS18250at 29.616 kb on + strand, within LRK53_RS18250at 29.616 kb on + strand, within LRK53_RS18250at 29.616 kb on + strand, within LRK53_RS18250at 29.616 kb on + strand, within LRK53_RS18250at 29.617 kb on - strand, within LRK53_RS18250at 29.661 kb on + strand, within LRK53_RS18250at 29.662 kb on - strand, within LRK53_RS18250at 29.747 kb on + strandat 29.748 kb on - strandat 29.748 kb on - strandat 30.070 kb on - strand, within LRK53_RS18255at 30.070 kb on - strand, within LRK53_RS18255at 30.099 kb on + strand, within LRK53_RS18255at 30.100 kb on - strand, within LRK53_RS18255at 30.215 kb on + strand, within LRK53_RS18255at 30.216 kb on - strand, within LRK53_RS18255at 30.216 kb on - strand, within LRK53_RS18255at 30.315 kb on + strand, within LRK53_RS18255at 30.316 kb on - strand, within LRK53_RS18255at 30.388 kb on - strand, within LRK53_RS18255at 30.522 kb on - strand, within LRK53_RS18260at 30.522 kb on - strand, within LRK53_RS18260at 30.732 kb on + strand, within LRK53_RS18260at 30.800 kb on + strand, within LRK53_RS18260at 30.800 kb on + strand, within LRK53_RS18260at 30.801 kb on - strand, within LRK53_RS18260at 30.801 kb on - strand, within LRK53_RS18260at 30.938 kb on + strand, within LRK53_RS18260at 30.938 kb on + strand, within LRK53_RS18260at 30.938 kb on + strand, within LRK53_RS18260at 30.938 kb on + strand, within LRK53_RS18260at 30.939 kb on - strand, within LRK53_RS18260at 30.939 kb on - strand, within LRK53_RS18260at 30.939 kb on - strand, within LRK53_RS18260at 30.939 kb on - strand, within LRK53_RS18260at 30.939 kb on - strand, within LRK53_RS18260at 30.939 kb on - strand, within LRK53_RS18260at 30.939 kb on - strand, within LRK53_RS18260at 30.939 kb on - strand, within LRK53_RS18260at 30.939 kb on - strand, within LRK53_RS18260at 31.170 kb on + strandat 31.170 kb on + strandat 31.170 kb on + strandat 31.171 kb on - strandat 31.171 kb on - strandat 31.176 kb on + strandat 31.176 kb on + strandat 31.177 kb on - strandat 31.177 kb on - strandat 31.179 kb on + strandat 31.179 kb on + strandat 31.179 kb on + strandat 31.179 kb on + strandat 31.180 kb on - strandat 31.180 kb on - strandat 31.180 kb on - strandat 31.180 kb on - strandat 31.317 kb on + strand, within LRK53_RS18265at 31.317 kb on + strand, within LRK53_RS18265at 31.317 kb on + strand, within LRK53_RS18265at 31.317 kb on + strand, within LRK53_RS18265at 31.318 kb on - strand, within LRK53_RS18265at 31.318 kb on - strand, within LRK53_RS18265at 31.318 kb on - strand, within LRK53_RS18265at 31.318 kb on - strand, within LRK53_RS18265at 31.318 kb on - strand, within LRK53_RS18265at 31.342 kb on - strand, within LRK53_RS18265at 31.373 kb on - strand, within LRK53_RS18265at 31.421 kb on + strandat 31.422 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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28,974 + LRK53_RS18250 0.53 +0.7
28,974 + LRK53_RS18250 0.53 +0.0
28,974 + LRK53_RS18250 0.53 -0.8
28,974 + LRK53_RS18250 0.53 -1.2
28,974 + LRK53_RS18250 0.53 +0.3
28,974 + LRK53_RS18250 0.53 +1.0
28,974 + LRK53_RS18250 0.53 +2.6
28,974 + LRK53_RS18250 0.53 -1.0
28,974 + LRK53_RS18250 0.53 +2.0
28,974 + LRK53_RS18250 0.53 -0.4
28,974 + LRK53_RS18250 0.53 -1.5
28,974 + LRK53_RS18250 0.53 +1.0
28,974 + LRK53_RS18250 0.53 -0.7
28,974 + LRK53_RS18250 0.53 -1.0
28,974 + LRK53_RS18250 0.53 -1.0
28,975 - LRK53_RS18250 0.53 -1.6
28,975 - LRK53_RS18250 0.53 -0.9
28,975 - LRK53_RS18250 0.53 -0.2
28,975 - LRK53_RS18250 0.53 -1.9
28,975 - LRK53_RS18250 0.53 -0.9
28,975 - LRK53_RS18250 0.53 +0.3
28,975 - LRK53_RS18250 0.53 -0.6
28,975 - LRK53_RS18250 0.53 -2.2
28,977 + LRK53_RS18250 0.53 +0.0
28,977 + LRK53_RS18250 0.53 +0.0
28,977 + LRK53_RS18250 0.53 -0.5
28,977 + LRK53_RS18250 0.53 -0.3
28,977 + LRK53_RS18250 0.53 +0.0
28,977 + LRK53_RS18250 0.53 +2.0
28,978 - LRK53_RS18250 0.53 -1.0
28,978 - LRK53_RS18250 0.53 -1.2
28,978 - LRK53_RS18250 0.53 +0.8
28,978 - LRK53_RS18250 0.53 -0.4
28,978 - LRK53_RS18250 0.53 -1.5
29,301 + LRK53_RS18250 0.70 +0.0
29,301 + LRK53_RS18250 0.70 +1.0
29,301 + LRK53_RS18250 0.70 -1.0
29,301 + LRK53_RS18250 0.70 -0.2
29,301 + LRK53_RS18250 0.70 -1.3
29,302 - LRK53_RS18250 0.70 -2.1
29,302 - LRK53_RS18250 0.70 +0.4
29,302 - LRK53_RS18250 0.70 -0.1
29,302 - LRK53_RS18250 0.70 +0.3
29,307 + LRK53_RS18250 0.70 -0.2
29,307 + LRK53_RS18250 0.70 -0.3
29,307 + LRK53_RS18250 0.70 -1.6
29,307 + LRK53_RS18250 0.70 -1.4
29,308 - LRK53_RS18250 0.70 -1.3
29,308 - LRK53_RS18250 0.70 -0.6
29,308 - LRK53_RS18250 0.70 +0.3
29,308 - LRK53_RS18250 0.70 +0.5
29,534 + LRK53_RS18250 0.82 -0.1
29,616 + LRK53_RS18250 0.86 -0.6
29,616 + LRK53_RS18250 0.86 +0.3
29,616 + LRK53_RS18250 0.86 -1.2
29,616 + LRK53_RS18250 0.86 +1.0
29,616 + LRK53_RS18250 0.86 +0.1
29,616 + LRK53_RS18250 0.86 +0.0
29,616 + LRK53_RS18250 0.86 -0.6
29,616 + LRK53_RS18250 0.86 -0.7
29,616 + LRK53_RS18250 0.86 -0.7
29,617 - LRK53_RS18250 0.86 -0.2
29,661 + LRK53_RS18250 0.89 +1.0
29,662 - LRK53_RS18250 0.89 +0.3
29,747 + -1.2
29,748 - -0.4
29,748 - -0.3
30,070 - LRK53_RS18255 0.33 -0.3
30,070 - LRK53_RS18255 0.33 +2.0
30,099 + LRK53_RS18255 0.38 -1.6
30,100 - LRK53_RS18255 0.38 -0.3
30,215 + LRK53_RS18255 0.59 -0.4
30,216 - LRK53_RS18255 0.59 +0.0
30,216 - LRK53_RS18255 0.59 -0.9
30,315 + LRK53_RS18255 0.76 -0.6
30,316 - LRK53_RS18255 0.77 +2.0
30,388 - LRK53_RS18255 0.89 +0.8
30,522 - LRK53_RS18260 0.12 +1.0
30,522 - LRK53_RS18260 0.12 -1.8
30,732 + LRK53_RS18260 0.44 -0.6
30,800 + LRK53_RS18260 0.55 -0.2
30,800 + LRK53_RS18260 0.55 -1.0
30,801 - LRK53_RS18260 0.55 +0.0
30,801 - LRK53_RS18260 0.55 -0.4
30,938 + LRK53_RS18260 0.76 -0.9
30,938 + LRK53_RS18260 0.76 -0.6
30,938 + LRK53_RS18260 0.76 +0.0
30,938 + LRK53_RS18260 0.76 +0.4
30,939 - LRK53_RS18260 0.76 -1.0
30,939 - LRK53_RS18260 0.76 -0.3
30,939 - LRK53_RS18260 0.76 +0.4
30,939 - LRK53_RS18260 0.76 +1.0
30,939 - LRK53_RS18260 0.76 -0.7
30,939 - LRK53_RS18260 0.76 +0.0
30,939 - LRK53_RS18260 0.76 -1.2
30,939 - LRK53_RS18260 0.76 -1.2
30,939 - LRK53_RS18260 0.76 -0.1
31,170 + -1.1
31,170 + +1.0
31,170 + +0.0
31,171 - -0.4
31,171 - +0.0
31,176 + -0.4
31,176 + +2.0
31,177 - -1.0
31,177 - +0.8
31,179 + -1.6
31,179 + -1.3
31,179 + -0.4
31,179 + -0.5
31,180 - -0.8
31,180 - +0.7
31,180 - +0.0
31,180 - -1.3
31,317 + LRK53_RS18265 0.59 -1.8
31,317 + LRK53_RS18265 0.59 +0.4
31,317 + LRK53_RS18265 0.59 +1.0
31,317 + LRK53_RS18265 0.59 -0.4
31,318 - LRK53_RS18265 0.60 -1.8
31,318 - LRK53_RS18265 0.60 -0.5
31,318 - LRK53_RS18265 0.60 -1.0
31,318 - LRK53_RS18265 0.60 -2.1
31,318 - LRK53_RS18265 0.60 -0.0
31,342 - LRK53_RS18265 0.69 +1.4
31,373 - LRK53_RS18265 0.81 -2.0
31,421 + +1.3
31,422 - -0.1

Or see this region's nucleotide sequence