Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16940

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS16935 and LRK53_RS16940 are separated by 100 nucleotidesLRK53_RS16940 and LRK53_RS16945 overlap by 4 nucleotides LRK53_RS16935: LRK53_RS16935 - hypothetical protein, at 3,718,483 to 3,719,325 _RS16935 LRK53_RS16940: LRK53_RS16940 - FHA domain-containing protein, at 3,719,426 to 3,720,337 _RS16940 LRK53_RS16945: LRK53_RS16945 - serine/threonine-protein kinase, at 3,720,334 to 3,723,633 _RS16945 Position (kb) 3719 3720 3721Strain fitness (log2 ratio) -2 -1 0 1 2at 3718.595 kb on + strand, within LRK53_RS16935at 3718.595 kb on + strand, within LRK53_RS16935at 3718.596 kb on - strand, within LRK53_RS16935at 3718.596 kb on - strand, within LRK53_RS16935at 3718.596 kb on - strand, within LRK53_RS16935at 3718.854 kb on + strand, within LRK53_RS16935at 3718.854 kb on + strand, within LRK53_RS16935at 3718.855 kb on - strand, within LRK53_RS16935at 3718.855 kb on - strand, within LRK53_RS16935at 3718.855 kb on - strand, within LRK53_RS16935at 3718.855 kb on - strand, within LRK53_RS16935at 3718.855 kb on - strand, within LRK53_RS16935at 3718.855 kb on - strand, within LRK53_RS16935at 3718.855 kb on - strand, within LRK53_RS16935at 3718.870 kb on + strand, within LRK53_RS16935at 3718.870 kb on + strand, within LRK53_RS16935at 3718.870 kb on + strand, within LRK53_RS16935at 3718.870 kb on + strand, within LRK53_RS16935at 3718.871 kb on - strand, within LRK53_RS16935at 3718.871 kb on - strand, within LRK53_RS16935at 3718.871 kb on - strand, within LRK53_RS16935at 3718.871 kb on - strand, within LRK53_RS16935at 3718.871 kb on - strand, within LRK53_RS16935at 3718.871 kb on - strand, within LRK53_RS16935at 3718.871 kb on - strand, within LRK53_RS16935at 3719.302 kb on + strandat 3719.414 kb on + strandat 3719.414 kb on + strandat 3719.414 kb on + strandat 3719.417 kb on + strandat 3719.417 kb on + strandat 3719.418 kb on - strandat 3719.550 kb on + strand, within LRK53_RS16940at 3720.103 kb on + strand, within LRK53_RS16940at 3720.103 kb on + strand, within LRK53_RS16940at 3720.103 kb on + strand, within LRK53_RS16940at 3720.103 kb on + strand, within LRK53_RS16940at 3720.104 kb on - strand, within LRK53_RS16940at 3720.104 kb on - strand, within LRK53_RS16940at 3720.104 kb on - strand, within LRK53_RS16940at 3720.155 kb on + strand, within LRK53_RS16940at 3720.155 kb on + strand, within LRK53_RS16940at 3720.156 kb on - strand, within LRK53_RS16940at 3720.156 kb on - strand, within LRK53_RS16940at 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.364 kb on + strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.365 kb on - strandat 3720.454 kb on + strandat 3720.454 kb on + strandat 3720.455 kb on - strandat 3720.455 kb on - strandat 3720.646 kb on + strandat 3720.646 kb on + strandat 3720.646 kb on + strandat 3720.646 kb on + strandat 3720.646 kb on + strandat 3720.646 kb on + strandat 3720.646 kb on + strandat 3720.646 kb on + strandat 3720.646 kb on + strandat 3720.646 kb on + strandat 3720.647 kb on - strandat 3720.647 kb on - strandat 3720.647 kb on - strandat 3720.647 kb on - strandat 3720.647 kb on - strandat 3720.820 kb on + strand, within LRK53_RS16945at 3720.820 kb on + strand, within LRK53_RS16945at 3720.820 kb on + strand, within LRK53_RS16945at 3720.820 kb on + strand, within LRK53_RS16945at 3720.820 kb on + strand, within LRK53_RS16945at 3720.820 kb on + strand, within LRK53_RS16945at 3720.820 kb on + strand, within LRK53_RS16945at 3720.821 kb on - strand, within LRK53_RS16945at 3720.821 kb on - strand, within LRK53_RS16945at 3720.821 kb on - strand, within LRK53_RS16945at 3720.821 kb on - strand, within LRK53_RS16945at 3720.821 kb on - strand, within LRK53_RS16945at 3720.868 kb on - strand, within LRK53_RS16945at 3720.868 kb on - strand, within LRK53_RS16945at 3720.868 kb on - strand, within LRK53_RS16945at 3720.907 kb on + strand, within LRK53_RS16945at 3720.907 kb on + strand, within LRK53_RS16945at 3720.907 kb on + strand, within LRK53_RS16945at 3720.908 kb on - strand, within LRK53_RS16945at 3720.908 kb on - strand, within LRK53_RS16945at 3720.908 kb on - strand, within LRK53_RS16945at 3720.908 kb on - strand, within LRK53_RS16945at 3720.908 kb on - strand, within LRK53_RS16945at 3720.908 kb on - strand, within LRK53_RS16945at 3720.908 kb on - strand, within LRK53_RS16945at 3720.908 kb on - strand, within LRK53_RS16945at 3720.908 kb on - strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.961 kb on + strand, within LRK53_RS16945at 3720.962 kb on - strand, within LRK53_RS16945at 3720.962 kb on - strand, within LRK53_RS16945at 3720.962 kb on - strand, within LRK53_RS16945at 3720.962 kb on - strand, within LRK53_RS16945at 3720.962 kb on - strand, within LRK53_RS16945

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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3,718,595 + LRK53_RS16935 0.13 +1.0
3,718,595 + LRK53_RS16935 0.13 +0.3
3,718,596 - LRK53_RS16935 0.13 +1.0
3,718,596 - LRK53_RS16935 0.13 -1.5
3,718,596 - LRK53_RS16935 0.13 -1.3
3,718,854 + LRK53_RS16935 0.44 -0.5
3,718,854 + LRK53_RS16935 0.44 -1.5
3,718,855 - LRK53_RS16935 0.44 +0.5
3,718,855 - LRK53_RS16935 0.44 -1.0
3,718,855 - LRK53_RS16935 0.44 +0.0
3,718,855 - LRK53_RS16935 0.44 -0.4
3,718,855 - LRK53_RS16935 0.44 +1.0
3,718,855 - LRK53_RS16935 0.44 -1.0
3,718,855 - LRK53_RS16935 0.44 +1.0
3,718,870 + LRK53_RS16935 0.46 -0.3
3,718,870 + LRK53_RS16935 0.46 +2.3
3,718,870 + LRK53_RS16935 0.46 +2.0
3,718,870 + LRK53_RS16935 0.46 +1.2
3,718,871 - LRK53_RS16935 0.46 +1.0
3,718,871 - LRK53_RS16935 0.46 +1.5
3,718,871 - LRK53_RS16935 0.46 -0.5
3,718,871 - LRK53_RS16935 0.46 -0.5
3,718,871 - LRK53_RS16935 0.46 -0.5
3,718,871 - LRK53_RS16935 0.46 +0.5
3,718,871 - LRK53_RS16935 0.46 +0.7
3,719,302 + +1.5
3,719,414 + +1.0
3,719,414 + +1.0
3,719,414 + -1.0
3,719,417 + +1.0
3,719,417 + -1.0
3,719,418 - -1.0
3,719,550 + LRK53_RS16940 0.14 +0.0
3,720,103 + LRK53_RS16940 0.74 +0.6
3,720,103 + LRK53_RS16940 0.74 +1.0
3,720,103 + LRK53_RS16940 0.74 +2.0
3,720,103 + LRK53_RS16940 0.74 +1.0
3,720,104 - LRK53_RS16940 0.74 +1.0
3,720,104 - LRK53_RS16940 0.74 +0.7
3,720,104 - LRK53_RS16940 0.74 +1.6
3,720,155 + LRK53_RS16940 0.80 +0.0
3,720,155 + LRK53_RS16940 0.80 -1.5
3,720,156 - LRK53_RS16940 0.80 -0.3
3,720,156 - LRK53_RS16940 0.80 +1.0
3,720,364 + +0.0
3,720,364 + -0.1
3,720,364 + +0.0
3,720,364 + +0.0
3,720,364 + -0.3
3,720,364 + -1.0
3,720,364 + -0.2
3,720,364 + -1.0
3,720,364 + +1.0
3,720,364 + +1.0
3,720,364 + -0.5
3,720,364 + +0.6
3,720,364 + +1.0
3,720,364 + +0.2
3,720,364 + -2.3
3,720,364 + -0.3
3,720,364 + -0.2
3,720,364 + -0.3
3,720,365 - -1.0
3,720,365 - +0.2
3,720,365 - +0.0
3,720,365 - +1.0
3,720,365 - +1.0
3,720,365 - -0.2
3,720,365 - +0.0
3,720,365 - -0.5
3,720,365 - -0.5
3,720,365 - +0.0
3,720,365 - -1.3
3,720,365 - +1.6
3,720,365 - +0.2
3,720,365 - -0.2
3,720,365 - -0.4
3,720,454 + +0.0
3,720,454 + +0.0
3,720,455 - -0.2
3,720,455 - +0.5
3,720,646 + +0.2
3,720,646 + -1.0
3,720,646 + -0.3
3,720,646 + +0.6
3,720,646 + +2.4
3,720,646 + -0.5
3,720,646 + -0.5
3,720,646 + -1.0
3,720,646 + +0.0
3,720,646 + -0.5
3,720,647 - -1.1
3,720,647 - +0.3
3,720,647 - -0.1
3,720,647 - +1.0
3,720,647 - -1.3
3,720,820 + LRK53_RS16945 0.15 -0.4
3,720,820 + LRK53_RS16945 0.15 +0.2
3,720,820 + LRK53_RS16945 0.15 +0.0
3,720,820 + LRK53_RS16945 0.15 -0.5
3,720,820 + LRK53_RS16945 0.15 +0.0
3,720,820 + LRK53_RS16945 0.15 +1.6
3,720,820 + LRK53_RS16945 0.15 +1.6
3,720,821 - LRK53_RS16945 0.15 +2.6
3,720,821 - LRK53_RS16945 0.15 -1.2
3,720,821 - LRK53_RS16945 0.15 -1.0
3,720,821 - LRK53_RS16945 0.15 -2.0
3,720,821 - LRK53_RS16945 0.15 +0.3
3,720,868 - LRK53_RS16945 0.16 +0.0
3,720,868 - LRK53_RS16945 0.16 -0.5
3,720,868 - LRK53_RS16945 0.16 +1.0
3,720,907 + LRK53_RS16945 0.17 -0.3
3,720,907 + LRK53_RS16945 0.17 +0.0
3,720,907 + LRK53_RS16945 0.17 +2.0
3,720,908 - LRK53_RS16945 0.17 -1.1
3,720,908 - LRK53_RS16945 0.17 +0.5
3,720,908 - LRK53_RS16945 0.17 +0.5
3,720,908 - LRK53_RS16945 0.17 +0.5
3,720,908 - LRK53_RS16945 0.17 -1.1
3,720,908 - LRK53_RS16945 0.17 -0.5
3,720,908 - LRK53_RS16945 0.17 +0.5
3,720,908 - LRK53_RS16945 0.17 +0.0
3,720,908 - LRK53_RS16945 0.17 +0.0
3,720,961 + LRK53_RS16945 0.19 -0.8
3,720,961 + LRK53_RS16945 0.19 +0.5
3,720,961 + LRK53_RS16945 0.19 -0.1
3,720,961 + LRK53_RS16945 0.19 -1.0
3,720,961 + LRK53_RS16945 0.19 +1.0
3,720,961 + LRK53_RS16945 0.19 -0.8
3,720,961 + LRK53_RS16945 0.19 +2.0
3,720,961 + LRK53_RS16945 0.19 -1.0
3,720,961 + LRK53_RS16945 0.19 +0.5
3,720,961 + LRK53_RS16945 0.19 +0.5
3,720,961 + LRK53_RS16945 0.19 -1.2
3,720,961 + LRK53_RS16945 0.19 +1.0
3,720,961 + LRK53_RS16945 0.19 +1.0
3,720,961 + LRK53_RS16945 0.19 +0.3
3,720,961 + LRK53_RS16945 0.19 +0.5
3,720,962 - LRK53_RS16945 0.19 +0.2
3,720,962 - LRK53_RS16945 0.19 +0.5
3,720,962 - LRK53_RS16945 0.19 -0.5
3,720,962 - LRK53_RS16945 0.19 +1.0
3,720,962 - LRK53_RS16945 0.19 +0.5

Or see this region's nucleotide sequence