Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS16825 and LRK53_RS16830 overlap by 4 nucleotides LRK53_RS16830 and LRK53_RS16835 are separated by 277 nucleotides
LRK53_RS16825: LRK53_RS16825 - DUF1631 domain-containing protein, at 3,698,194 to 3,700,470
_RS16825
LRK53_RS16830: LRK53_RS16830 - PilZ domain-containing protein, at 3,700,467 to 3,700,814
_RS16830
LRK53_RS16835: LRK53_RS16835 - IS5 family transposase, at 3,701,092 to 3,702,222
_RS16835
Position (kb)
3700
3701 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.586 kb on + strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3699.587 kb on - strand, within LRK53_RS16825 at 3700.246 kb on + strand at 3700.246 kb on + strand at 3700.247 kb on - strand at 3700.358 kb on + strand at 3700.359 kb on - strand at 3700.359 kb on - strand at 3700.626 kb on + strand, within LRK53_RS16830 at 3700.626 kb on + strand, within LRK53_RS16830 at 3700.626 kb on + strand, within LRK53_RS16830 at 3700.626 kb on + strand, within LRK53_RS16830 at 3700.626 kb on + strand, within LRK53_RS16830 at 3700.626 kb on + strand, within LRK53_RS16830 at 3700.626 kb on + strand, within LRK53_RS16830 at 3700.626 kb on + strand, within LRK53_RS16830 at 3700.626 kb on + strand, within LRK53_RS16830 at 3700.627 kb on - strand, within LRK53_RS16830 at 3700.627 kb on - strand, within LRK53_RS16830 at 3700.627 kb on - strand, within LRK53_RS16830 at 3700.627 kb on - strand, within LRK53_RS16830 at 3700.627 kb on - strand, within LRK53_RS16830 at 3700.627 kb on - strand, within LRK53_RS16830 at 3700.627 kb on - strand, within LRK53_RS16830
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM remove 3,699,586 + LRK53_RS16825 0.61 -0.2 3,699,586 + LRK53_RS16825 0.61 -0.7 3,699,586 + LRK53_RS16825 0.61 -1.5 3,699,586 + LRK53_RS16825 0.61 -1.3 3,699,586 + LRK53_RS16825 0.61 -0.5 3,699,586 + LRK53_RS16825 0.61 -0.4 3,699,586 + LRK53_RS16825 0.61 -0.5 3,699,586 + LRK53_RS16825 0.61 -0.4 3,699,586 + LRK53_RS16825 0.61 -1.8 3,699,586 + LRK53_RS16825 0.61 -1.0 3,699,586 + LRK53_RS16825 0.61 +0.0 3,699,586 + LRK53_RS16825 0.61 -0.7 3,699,586 + LRK53_RS16825 0.61 +0.0 3,699,587 - LRK53_RS16825 0.61 +2.6 3,699,587 - LRK53_RS16825 0.61 -1.0 3,699,587 - LRK53_RS16825 0.61 +1.6 3,699,587 - LRK53_RS16825 0.61 +0.0 3,699,587 - LRK53_RS16825 0.61 +0.0 3,699,587 - LRK53_RS16825 0.61 -0.5 3,699,587 - LRK53_RS16825 0.61 -1.7 3,699,587 - LRK53_RS16825 0.61 -0.9 3,699,587 - LRK53_RS16825 0.61 -1.2 3,699,587 - LRK53_RS16825 0.61 +0.0 3,699,587 - LRK53_RS16825 0.61 +0.0 3,699,587 - LRK53_RS16825 0.61 -1.4 3,699,587 - LRK53_RS16825 0.61 +0.5 3,699,587 - LRK53_RS16825 0.61 +0.0 3,699,587 - LRK53_RS16825 0.61 -1.5 3,699,587 - LRK53_RS16825 0.61 -0.5 3,699,587 - LRK53_RS16825 0.61 -0.5 3,699,587 - LRK53_RS16825 0.61 +0.7 3,700,246 + -0.4 3,700,246 + -0.5 3,700,247 - +0.6 3,700,358 + -0.8 3,700,359 - -2.9 3,700,359 - -0.3 3,700,626 + LRK53_RS16830 0.46 -0.3 3,700,626 + LRK53_RS16830 0.46 -0.1 3,700,626 + LRK53_RS16830 0.46 +0.5 3,700,626 + LRK53_RS16830 0.46 +2.4 3,700,626 + LRK53_RS16830 0.46 +1.6 3,700,626 + LRK53_RS16830 0.46 +1.8 3,700,626 + LRK53_RS16830 0.46 +0.3 3,700,626 + LRK53_RS16830 0.46 -0.1 3,700,626 + LRK53_RS16830 0.46 -0.7 3,700,627 - LRK53_RS16830 0.46 +0.5 3,700,627 - LRK53_RS16830 0.46 -0.4 3,700,627 - LRK53_RS16830 0.46 -0.8 3,700,627 - LRK53_RS16830 0.46 +0.1 3,700,627 - LRK53_RS16830 0.46 +1.0 3,700,627 - LRK53_RS16830 0.46 +0.0 3,700,627 - LRK53_RS16830 0.46 -1.1
Or see this region's nucleotide sequence