Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16830

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS16825 and LRK53_RS16830 overlap by 4 nucleotidesLRK53_RS16830 and LRK53_RS16835 are separated by 277 nucleotides LRK53_RS16825: LRK53_RS16825 - DUF1631 domain-containing protein, at 3,698,194 to 3,700,470 _RS16825 LRK53_RS16830: LRK53_RS16830 - PilZ domain-containing protein, at 3,700,467 to 3,700,814 _RS16830 LRK53_RS16835: LRK53_RS16835 - IS5 family transposase, at 3,701,092 to 3,702,222 _RS16835 Position (kb) 3700 3701Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.586 kb on + strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3699.587 kb on - strand, within LRK53_RS16825at 3700.246 kb on + strandat 3700.246 kb on + strandat 3700.247 kb on - strandat 3700.358 kb on + strandat 3700.359 kb on - strandat 3700.359 kb on - strandat 3700.626 kb on + strand, within LRK53_RS16830at 3700.626 kb on + strand, within LRK53_RS16830at 3700.626 kb on + strand, within LRK53_RS16830at 3700.626 kb on + strand, within LRK53_RS16830at 3700.626 kb on + strand, within LRK53_RS16830at 3700.626 kb on + strand, within LRK53_RS16830at 3700.626 kb on + strand, within LRK53_RS16830at 3700.626 kb on + strand, within LRK53_RS16830at 3700.626 kb on + strand, within LRK53_RS16830at 3700.627 kb on - strand, within LRK53_RS16830at 3700.627 kb on - strand, within LRK53_RS16830at 3700.627 kb on - strand, within LRK53_RS16830at 3700.627 kb on - strand, within LRK53_RS16830at 3700.627 kb on - strand, within LRK53_RS16830at 3700.627 kb on - strand, within LRK53_RS16830at 3700.627 kb on - strand, within LRK53_RS16830

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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3,699,586 + LRK53_RS16825 0.61 -0.2
3,699,586 + LRK53_RS16825 0.61 -0.7
3,699,586 + LRK53_RS16825 0.61 -1.5
3,699,586 + LRK53_RS16825 0.61 -1.3
3,699,586 + LRK53_RS16825 0.61 -0.5
3,699,586 + LRK53_RS16825 0.61 -0.4
3,699,586 + LRK53_RS16825 0.61 -0.5
3,699,586 + LRK53_RS16825 0.61 -0.4
3,699,586 + LRK53_RS16825 0.61 -1.8
3,699,586 + LRK53_RS16825 0.61 -1.0
3,699,586 + LRK53_RS16825 0.61 +0.0
3,699,586 + LRK53_RS16825 0.61 -0.7
3,699,586 + LRK53_RS16825 0.61 +0.0
3,699,587 - LRK53_RS16825 0.61 +2.6
3,699,587 - LRK53_RS16825 0.61 -1.0
3,699,587 - LRK53_RS16825 0.61 +1.6
3,699,587 - LRK53_RS16825 0.61 +0.0
3,699,587 - LRK53_RS16825 0.61 +0.0
3,699,587 - LRK53_RS16825 0.61 -0.5
3,699,587 - LRK53_RS16825 0.61 -1.7
3,699,587 - LRK53_RS16825 0.61 -0.9
3,699,587 - LRK53_RS16825 0.61 -1.2
3,699,587 - LRK53_RS16825 0.61 +0.0
3,699,587 - LRK53_RS16825 0.61 +0.0
3,699,587 - LRK53_RS16825 0.61 -1.4
3,699,587 - LRK53_RS16825 0.61 +0.5
3,699,587 - LRK53_RS16825 0.61 +0.0
3,699,587 - LRK53_RS16825 0.61 -1.5
3,699,587 - LRK53_RS16825 0.61 -0.5
3,699,587 - LRK53_RS16825 0.61 -0.5
3,699,587 - LRK53_RS16825 0.61 +0.7
3,700,246 + -0.4
3,700,246 + -0.5
3,700,247 - +0.6
3,700,358 + -0.8
3,700,359 - -2.9
3,700,359 - -0.3
3,700,626 + LRK53_RS16830 0.46 -0.3
3,700,626 + LRK53_RS16830 0.46 -0.1
3,700,626 + LRK53_RS16830 0.46 +0.5
3,700,626 + LRK53_RS16830 0.46 +2.4
3,700,626 + LRK53_RS16830 0.46 +1.6
3,700,626 + LRK53_RS16830 0.46 +1.8
3,700,626 + LRK53_RS16830 0.46 +0.3
3,700,626 + LRK53_RS16830 0.46 -0.1
3,700,626 + LRK53_RS16830 0.46 -0.7
3,700,627 - LRK53_RS16830 0.46 +0.5
3,700,627 - LRK53_RS16830 0.46 -0.4
3,700,627 - LRK53_RS16830 0.46 -0.8
3,700,627 - LRK53_RS16830 0.46 +0.1
3,700,627 - LRK53_RS16830 0.46 +1.0
3,700,627 - LRK53_RS16830 0.46 +0.0
3,700,627 - LRK53_RS16830 0.46 -1.1

Or see this region's nucleotide sequence