Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15180

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15170 and LRK53_RS15175 overlap by 1 nucleotidesLRK53_RS15175 and LRK53_RS15180 are separated by 169 nucleotidesLRK53_RS15180 and LRK53_RS15185 are separated by 236 nucleotides LRK53_RS15170: LRK53_RS15170 - flagellar basal body rod protein FlgC, at 3,312,426 to 3,312,845 _RS15170 LRK53_RS15175: LRK53_RS15175 - flagellar basal body rod protein FlgB, at 3,312,845 to 3,313,249 _RS15175 LRK53_RS15180: LRK53_RS15180 - chemotaxis protein, at 3,313,419 to 3,314,357 _RS15180 LRK53_RS15185: LRK53_RS15185 - methyl-accepting chemotaxis protein, at 3,314,594 to 3,315,898 _RS15185 Position (kb) 3313 3314 3315Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3312.496 kb on + strand, within LRK53_RS15170at 3312.496 kb on + strand, within LRK53_RS15170at 3312.557 kb on - strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.563 kb on - strand, within LRK53_RS15170at 3312.563 kb on - strand, within LRK53_RS15170at 3312.563 kb on - strand, within LRK53_RS15170at 3312.563 kb on - strand, within LRK53_RS15170at 3312.722 kb on - strand, within LRK53_RS15170at 3312.819 kb on + strandat 3312.820 kb on - strandat 3312.820 kb on - strandat 3312.898 kb on + strand, within LRK53_RS15175at 3312.898 kb on + strand, within LRK53_RS15175at 3312.899 kb on - strand, within LRK53_RS15175at 3312.918 kb on + strand, within LRK53_RS15175at 3312.919 kb on - strand, within LRK53_RS15175at 3312.919 kb on - strand, within LRK53_RS15175at 3312.919 kb on - strand, within LRK53_RS15175at 3312.919 kb on - strand, within LRK53_RS15175at 3312.919 kb on - strand, within LRK53_RS15175at 3313.006 kb on - strand, within LRK53_RS15175at 3313.006 kb on - strand, within LRK53_RS15175at 3313.138 kb on - strand, within LRK53_RS15175at 3313.138 kb on - strand, within LRK53_RS15175at 3313.489 kb on + strandat 3313.489 kb on + strandat 3313.490 kb on - strandat 3313.490 kb on - strandat 3313.490 kb on - strandat 3313.490 kb on - strandat 3313.490 kb on - strandat 3313.490 kb on - strandat 3313.947 kb on + strand, within LRK53_RS15180at 3314.470 kb on + strandat 3314.470 kb on + strandat 3314.470 kb on + strandat 3314.471 kb on - strandat 3314.471 kb on - strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.572 kb on + strandat 3314.573 kb on - strandat 3314.573 kb on - strandat 3314.573 kb on - strandat 3314.573 kb on - strandat 3314.573 kb on - strandat 3314.573 kb on - strandat 3314.573 kb on - strandat 3314.573 kb on - strandat 3314.573 kb on - strandat 3314.573 kb on - strandat 3314.573 kb on - strandat 3314.573 kb on - strandat 3314.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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3,312,496 + LRK53_RS15170 0.17 -0.6
3,312,496 + LRK53_RS15170 0.17 -1.3
3,312,557 - LRK53_RS15170 0.31 +0.9
3,312,562 + LRK53_RS15170 0.32 -0.6
3,312,562 + LRK53_RS15170 0.32 -1.2
3,312,562 + LRK53_RS15170 0.32 -0.1
3,312,562 + LRK53_RS15170 0.32 -1.2
3,312,562 + LRK53_RS15170 0.32 -1.4
3,312,562 + LRK53_RS15170 0.32 -0.5
3,312,563 - LRK53_RS15170 0.33 -0.6
3,312,563 - LRK53_RS15170 0.33 -0.6
3,312,563 - LRK53_RS15170 0.33 -0.6
3,312,563 - LRK53_RS15170 0.33 -1.1
3,312,722 - LRK53_RS15170 0.70 -0.6
3,312,819 + +1.3
3,312,820 - -1.4
3,312,820 - -1.1
3,312,898 + LRK53_RS15175 0.13 -0.1
3,312,898 + LRK53_RS15175 0.13 -1.9
3,312,899 - LRK53_RS15175 0.13 -0.1
3,312,918 + LRK53_RS15175 0.18 -0.3
3,312,919 - LRK53_RS15175 0.18 +0.9
3,312,919 - LRK53_RS15175 0.18 +0.4
3,312,919 - LRK53_RS15175 0.18 +0.2
3,312,919 - LRK53_RS15175 0.18 -0.3
3,312,919 - LRK53_RS15175 0.18 -0.1
3,313,006 - LRK53_RS15175 0.40 +0.2
3,313,006 - LRK53_RS15175 0.40 +0.9
3,313,138 - LRK53_RS15175 0.72 -0.1
3,313,138 - LRK53_RS15175 0.72 +0.9
3,313,489 + +0.7
3,313,489 + -0.3
3,313,490 - -1.2
3,313,490 - -0.6
3,313,490 - +0.9
3,313,490 - +1.4
3,313,490 - -0.1
3,313,490 - -0.5
3,313,947 + LRK53_RS15180 0.56 -1.3
3,314,470 + +1.5
3,314,470 + -0.9
3,314,470 + +1.4
3,314,471 - -0.6
3,314,471 - -0.1
3,314,572 + -1.4
3,314,572 + +0.4
3,314,572 + +0.9
3,314,572 + +0.9
3,314,572 + -1.4
3,314,572 + +0.9
3,314,572 + +0.9
3,314,572 + -2.1
3,314,572 + -0.5
3,314,572 + -0.5
3,314,572 + -0.1
3,314,572 + +1.9
3,314,572 + -0.1
3,314,572 + +0.4
3,314,572 + +0.4
3,314,573 - -1.4
3,314,573 - -0.6
3,314,573 - -1.9
3,314,573 - -3.8
3,314,573 - -0.2
3,314,573 - +0.9
3,314,573 - -0.2
3,314,573 - -0.6
3,314,573 - +0.5
3,314,573 - -0.9
3,314,573 - -0.1
3,314,573 - -0.3
3,314,573 - -0.9

Or see this region's nucleotide sequence