Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15170 and LRK53_RS15175 overlap by 1 nucleotides LRK53_RS15175 and LRK53_RS15180 are separated by 169 nucleotides LRK53_RS15180 and LRK53_RS15185 are separated by 236 nucleotides
LRK53_RS15170: LRK53_RS15170 - flagellar basal body rod protein FlgC, at 3,312,426 to 3,312,845
_RS15170
LRK53_RS15175: LRK53_RS15175 - flagellar basal body rod protein FlgB, at 3,312,845 to 3,313,249
_RS15175
LRK53_RS15180: LRK53_RS15180 - chemotaxis protein, at 3,313,419 to 3,314,357
_RS15180
LRK53_RS15185: LRK53_RS15185 - methyl-accepting chemotaxis protein, at 3,314,594 to 3,315,898
_RS15185
Position (kb)
3313
3314
3315 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3312.496 kb on + strand, within LRK53_RS15170 at 3312.496 kb on + strand, within LRK53_RS15170 at 3312.557 kb on - strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.563 kb on - strand, within LRK53_RS15170 at 3312.563 kb on - strand, within LRK53_RS15170 at 3312.563 kb on - strand, within LRK53_RS15170 at 3312.563 kb on - strand, within LRK53_RS15170 at 3312.722 kb on - strand, within LRK53_RS15170 at 3312.819 kb on + strand at 3312.820 kb on - strand at 3312.820 kb on - strand at 3312.898 kb on + strand, within LRK53_RS15175 at 3312.898 kb on + strand, within LRK53_RS15175 at 3312.899 kb on - strand, within LRK53_RS15175 at 3312.918 kb on + strand, within LRK53_RS15175 at 3312.919 kb on - strand, within LRK53_RS15175 at 3312.919 kb on - strand, within LRK53_RS15175 at 3312.919 kb on - strand, within LRK53_RS15175 at 3312.919 kb on - strand, within LRK53_RS15175 at 3312.919 kb on - strand, within LRK53_RS15175 at 3313.006 kb on - strand, within LRK53_RS15175 at 3313.006 kb on - strand, within LRK53_RS15175 at 3313.138 kb on - strand, within LRK53_RS15175 at 3313.138 kb on - strand, within LRK53_RS15175 at 3313.489 kb on + strand at 3313.489 kb on + strand at 3313.490 kb on - strand at 3313.490 kb on - strand at 3313.490 kb on - strand at 3313.490 kb on - strand at 3313.490 kb on - strand at 3313.490 kb on - strand at 3313.947 kb on + strand, within LRK53_RS15180 at 3314.470 kb on + strand at 3314.470 kb on + strand at 3314.470 kb on + strand at 3314.471 kb on - strand at 3314.471 kb on - strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.572 kb on + strand at 3314.573 kb on - strand at 3314.573 kb on - strand at 3314.573 kb on - strand at 3314.573 kb on - strand at 3314.573 kb on - strand at 3314.573 kb on - strand at 3314.573 kb on - strand at 3314.573 kb on - strand at 3314.573 kb on - strand at 3314.573 kb on - strand at 3314.573 kb on - strand at 3314.573 kb on - strand at 3314.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM remove 3,312,496 + LRK53_RS15170 0.17 -0.6 3,312,496 + LRK53_RS15170 0.17 -1.3 3,312,557 - LRK53_RS15170 0.31 +0.9 3,312,562 + LRK53_RS15170 0.32 -0.6 3,312,562 + LRK53_RS15170 0.32 -1.2 3,312,562 + LRK53_RS15170 0.32 -0.1 3,312,562 + LRK53_RS15170 0.32 -1.2 3,312,562 + LRK53_RS15170 0.32 -1.4 3,312,562 + LRK53_RS15170 0.32 -0.5 3,312,563 - LRK53_RS15170 0.33 -0.6 3,312,563 - LRK53_RS15170 0.33 -0.6 3,312,563 - LRK53_RS15170 0.33 -0.6 3,312,563 - LRK53_RS15170 0.33 -1.1 3,312,722 - LRK53_RS15170 0.70 -0.6 3,312,819 + +1.3 3,312,820 - -1.4 3,312,820 - -1.1 3,312,898 + LRK53_RS15175 0.13 -0.1 3,312,898 + LRK53_RS15175 0.13 -1.9 3,312,899 - LRK53_RS15175 0.13 -0.1 3,312,918 + LRK53_RS15175 0.18 -0.3 3,312,919 - LRK53_RS15175 0.18 +0.9 3,312,919 - LRK53_RS15175 0.18 +0.4 3,312,919 - LRK53_RS15175 0.18 +0.2 3,312,919 - LRK53_RS15175 0.18 -0.3 3,312,919 - LRK53_RS15175 0.18 -0.1 3,313,006 - LRK53_RS15175 0.40 +0.2 3,313,006 - LRK53_RS15175 0.40 +0.9 3,313,138 - LRK53_RS15175 0.72 -0.1 3,313,138 - LRK53_RS15175 0.72 +0.9 3,313,489 + +0.7 3,313,489 + -0.3 3,313,490 - -1.2 3,313,490 - -0.6 3,313,490 - +0.9 3,313,490 - +1.4 3,313,490 - -0.1 3,313,490 - -0.5 3,313,947 + LRK53_RS15180 0.56 -1.3 3,314,470 + +1.5 3,314,470 + -0.9 3,314,470 + +1.4 3,314,471 - -0.6 3,314,471 - -0.1 3,314,572 + -1.4 3,314,572 + +0.4 3,314,572 + +0.9 3,314,572 + +0.9 3,314,572 + -1.4 3,314,572 + +0.9 3,314,572 + +0.9 3,314,572 + -2.1 3,314,572 + -0.5 3,314,572 + -0.5 3,314,572 + -0.1 3,314,572 + +1.9 3,314,572 + -0.1 3,314,572 + +0.4 3,314,572 + +0.4 3,314,573 - -1.4 3,314,573 - -0.6 3,314,573 - -1.9 3,314,573 - -3.8 3,314,573 - -0.2 3,314,573 - +0.9 3,314,573 - -0.2 3,314,573 - -0.6 3,314,573 - +0.5 3,314,573 - -0.9 3,314,573 - -0.1 3,314,573 - -0.3 3,314,573 - -0.9
Or see this region's nucleotide sequence