Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14445

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14440 and LRK53_RS14445 overlap by 4 nucleotidesLRK53_RS14445 and LRK53_RS14450 are separated by 149 nucleotidesLRK53_RS14450 and LRK53_RS14455 are separated by 43 nucleotides LRK53_RS14440: LRK53_RS14440 - MBL fold metallo-hydrolase, at 3,164,390 to 3,165,811 _RS14440 LRK53_RS14445: LRK53_RS14445 - TIGR00730 family Rossman fold protein, at 3,165,808 to 3,166,662 _RS14445 LRK53_RS14450: LRK53_RS14450 - cytochrome c, at 3,166,812 to 3,167,285 _RS14450 LRK53_RS14455: LRK53_RS14455 - ATP-binding protein, at 3,167,329 to 3,168,708 _RS14455 Position (kb) 3165 3166 3167Strain fitness (log2 ratio) -2 -1 0 1 2at 3164.808 kb on + strand, within LRK53_RS14440at 3164.808 kb on + strand, within LRK53_RS14440at 3164.809 kb on - strand, within LRK53_RS14440at 3164.809 kb on - strand, within LRK53_RS14440at 3164.809 kb on - strand, within LRK53_RS14440at 3164.809 kb on - strand, within LRK53_RS14440at 3164.809 kb on - strand, within LRK53_RS14440at 3164.809 kb on - strand, within LRK53_RS14440at 3164.809 kb on - strand, within LRK53_RS14440at 3164.809 kb on - strand, within LRK53_RS14440at 3165.035 kb on + strand, within LRK53_RS14440at 3165.036 kb on - strand, within LRK53_RS14440at 3165.164 kb on + strand, within LRK53_RS14440at 3165.164 kb on + strand, within LRK53_RS14440at 3165.164 kb on + strand, within LRK53_RS14440at 3165.164 kb on + strand, within LRK53_RS14440at 3165.164 kb on + strand, within LRK53_RS14440at 3165.165 kb on - strand, within LRK53_RS14440at 3165.165 kb on - strand, within LRK53_RS14440at 3165.165 kb on - strand, within LRK53_RS14440at 3165.165 kb on - strand, within LRK53_RS14440at 3165.165 kb on - strand, within LRK53_RS14440at 3165.165 kb on - strand, within LRK53_RS14440at 3165.332 kb on + strand, within LRK53_RS14440at 3165.332 kb on + strand, within LRK53_RS14440at 3165.333 kb on - strand, within LRK53_RS14440at 3166.135 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.293 kb on + strand, within LRK53_RS14445at 3166.293 kb on + strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.360 kb on + strand, within LRK53_RS14445at 3166.360 kb on + strand, within LRK53_RS14445at 3166.361 kb on - strand, within LRK53_RS14445at 3166.361 kb on - strand, within LRK53_RS14445at 3166.361 kb on - strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.455 kb on - strand, within LRK53_RS14445at 3166.455 kb on - strand, within LRK53_RS14445at 3166.455 kb on - strand, within LRK53_RS14445at 3166.455 kb on - strand, within LRK53_RS14445at 3166.455 kb on - strand, within LRK53_RS14445at 3167.121 kb on + strand, within LRK53_RS14450at 3167.121 kb on + strand, within LRK53_RS14450at 3167.121 kb on + strand, within LRK53_RS14450at 3167.122 kb on - strand, within LRK53_RS14450

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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3,164,808 + LRK53_RS14440 0.29 -0.5
3,164,808 + LRK53_RS14440 0.29 +1.5
3,164,809 - LRK53_RS14440 0.29 +0.4
3,164,809 - LRK53_RS14440 0.29 +0.9
3,164,809 - LRK53_RS14440 0.29 -0.6
3,164,809 - LRK53_RS14440 0.29 -0.1
3,164,809 - LRK53_RS14440 0.29 -0.1
3,164,809 - LRK53_RS14440 0.29 -0.8
3,164,809 - LRK53_RS14440 0.29 +0.1
3,164,809 - LRK53_RS14440 0.29 +0.9
3,165,035 + LRK53_RS14440 0.45 -0.6
3,165,036 - LRK53_RS14440 0.45 +0.9
3,165,164 + LRK53_RS14440 0.54 +0.9
3,165,164 + LRK53_RS14440 0.54 -0.4
3,165,164 + LRK53_RS14440 0.54 +0.3
3,165,164 + LRK53_RS14440 0.54 -1.1
3,165,164 + LRK53_RS14440 0.54 +0.9
3,165,165 - LRK53_RS14440 0.55 -0.6
3,165,165 - LRK53_RS14440 0.55 -0.1
3,165,165 - LRK53_RS14440 0.55 +1.5
3,165,165 - LRK53_RS14440 0.55 +0.9
3,165,165 - LRK53_RS14440 0.55 +0.9
3,165,165 - LRK53_RS14440 0.55 -1.6
3,165,332 + LRK53_RS14440 0.66 -0.2
3,165,332 + LRK53_RS14440 0.66 -2.2
3,165,333 - LRK53_RS14440 0.66 -0.6
3,166,135 + LRK53_RS14445 0.38 -0.1
3,166,138 + LRK53_RS14445 0.39 +2.5
3,166,138 + LRK53_RS14445 0.39 -0.1
3,166,138 + LRK53_RS14445 0.39 +0.1
3,166,138 + LRK53_RS14445 0.39 +0.9
3,166,138 + LRK53_RS14445 0.39 -0.4
3,166,138 + LRK53_RS14445 0.39 -0.1
3,166,293 + LRK53_RS14445 0.57 +1.9
3,166,293 + LRK53_RS14445 0.57 -0.3
3,166,294 - LRK53_RS14445 0.57 +0.0
3,166,294 - LRK53_RS14445 0.57 -1.4
3,166,294 - LRK53_RS14445 0.57 +0.9
3,166,294 - LRK53_RS14445 0.57 +1.5
3,166,294 - LRK53_RS14445 0.57 -1.1
3,166,294 - LRK53_RS14445 0.57 +0.4
3,166,360 + LRK53_RS14445 0.65 -1.7
3,166,360 + LRK53_RS14445 0.65 -1.1
3,166,361 - LRK53_RS14445 0.65 -1.1
3,166,361 - LRK53_RS14445 0.65 +1.4
3,166,361 - LRK53_RS14445 0.65 +0.6
3,166,454 + LRK53_RS14445 0.76 +0.4
3,166,454 + LRK53_RS14445 0.76 -0.6
3,166,454 + LRK53_RS14445 0.76 +0.7
3,166,454 + LRK53_RS14445 0.76 -0.4
3,166,454 + LRK53_RS14445 0.76 +1.3
3,166,454 + LRK53_RS14445 0.76 +0.4
3,166,454 + LRK53_RS14445 0.76 -0.3
3,166,455 - LRK53_RS14445 0.76 +2.5
3,166,455 - LRK53_RS14445 0.76 -1.6
3,166,455 - LRK53_RS14445 0.76 -0.6
3,166,455 - LRK53_RS14445 0.76 +0.4
3,166,455 - LRK53_RS14445 0.76 +0.9
3,167,121 + LRK53_RS14450 0.65 -1.0
3,167,121 + LRK53_RS14450 0.65 +0.9
3,167,121 + LRK53_RS14450 0.65 +0.4
3,167,122 - LRK53_RS14450 0.65 +0.9

Or see this region's nucleotide sequence