Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13635

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS13630 and LRK53_RS13635 are separated by 83 nucleotidesLRK53_RS13635 and LRK53_RS13640 are separated by 65 nucleotides LRK53_RS13630: LRK53_RS13630 - alanine--tRNA ligase, at 3,004,428 to 3,007,055 _RS13630 LRK53_RS13635: LRK53_RS13635 - recombination regulator RecX, at 3,007,139 to 3,007,657 _RS13635 LRK53_RS13640: LRK53_RS13640 - recombinase RecA, at 3,007,723 to 3,008,757 _RS13640 Position (kb) 3007 3008Strain fitness (log2 ratio) -1 0 1at 3007.148 kb on - strandat 3007.148 kb on - strandat 3007.178 kb on - strandat 3007.178 kb on - strandat 3007.188 kb on - strandat 3007.399 kb on - strand, within LRK53_RS13635at 3007.455 kb on + strand, within LRK53_RS13635at 3007.455 kb on + strand, within LRK53_RS13635at 3007.455 kb on + strand, within LRK53_RS13635at 3007.455 kb on + strand, within LRK53_RS13635at 3007.456 kb on - strand, within LRK53_RS13635at 3007.456 kb on - strand, within LRK53_RS13635at 3007.456 kb on - strand, within LRK53_RS13635at 3007.456 kb on - strand, within LRK53_RS13635at 3007.584 kb on + strand, within LRK53_RS13635at 3007.585 kb on - strand, within LRK53_RS13635

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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3,007,148 - -0.1
3,007,148 - -0.5
3,007,178 - +0.4
3,007,178 - +0.3
3,007,188 - +0.4
3,007,399 - LRK53_RS13635 0.50 -0.2
3,007,455 + LRK53_RS13635 0.61 +0.7
3,007,455 + LRK53_RS13635 0.61 -0.1
3,007,455 + LRK53_RS13635 0.61 +0.9
3,007,455 + LRK53_RS13635 0.61 +0.2
3,007,456 - LRK53_RS13635 0.61 -0.1
3,007,456 - LRK53_RS13635 0.61 +0.4
3,007,456 - LRK53_RS13635 0.61 +0.2
3,007,456 - LRK53_RS13635 0.61 -1.6
3,007,584 + LRK53_RS13635 0.86 -0.1
3,007,585 - LRK53_RS13635 0.86 -1.1

Or see this region's nucleotide sequence