Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11815

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11805 and LRK53_RS11810 overlap by 4 nucleotidesLRK53_RS11810 and LRK53_RS11815 are separated by 237 nucleotidesLRK53_RS11815 and LRK53_RS11820 are separated by 66 nucleotides LRK53_RS11805: LRK53_RS11805 - heavy metal translocating P-type ATPase, at 2,628,677 to 2,630,932 _RS11805 LRK53_RS11810: LRK53_RS11810 - cbb3-type cytochrome oxidase assembly protein CcoS, at 2,630,929 to 2,631,123 _RS11810 LRK53_RS11815: LRK53_RS11815 - hypothetical protein, at 2,631,361 to 2,631,552 _RS11815 LRK53_RS11820: LRK53_RS11820 - phospholipase D-like domain-containing protein, at 2,631,619 to 2,633,085 _RS11820 Position (kb) 2631 2632Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2630.753 kb on + strandat 2630.753 kb on + strandat 2630.849 kb on + strandat 2630.850 kb on - strandat 2631.378 kb on + strandat 2631.379 kb on - strandat 2631.380 kb on + strandat 2631.380 kb on + strandat 2631.380 kb on + strandat 2631.380 kb on + strandat 2631.380 kb on + strandat 2631.380 kb on + strandat 2631.380 kb on + strandat 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.381 kb on - strand, within LRK53_RS11815at 2631.422 kb on + strand, within LRK53_RS11815at 2631.422 kb on + strand, within LRK53_RS11815at 2631.423 kb on - strand, within LRK53_RS11815at 2631.423 kb on - strand, within LRK53_RS11815at 2631.506 kb on + strand, within LRK53_RS11815at 2631.506 kb on + strand, within LRK53_RS11815at 2631.507 kb on - strand, within LRK53_RS11815at 2631.607 kb on + strandat 2631.607 kb on + strandat 2631.607 kb on + strandat 2631.608 kb on - strandat 2631.745 kb on + strandat 2631.802 kb on + strand, within LRK53_RS11820at 2631.802 kb on + strand, within LRK53_RS11820at 2631.802 kb on + strand, within LRK53_RS11820at 2631.802 kb on + strand, within LRK53_RS11820at 2631.802 kb on + strand, within LRK53_RS11820at 2631.802 kb on + strand, within LRK53_RS11820at 2631.802 kb on + strand, within LRK53_RS11820at 2631.802 kb on + strand, within LRK53_RS11820at 2631.803 kb on - strand, within LRK53_RS11820at 2631.803 kb on - strand, within LRK53_RS11820at 2631.803 kb on - strand, within LRK53_RS11820at 2631.803 kb on - strand, within LRK53_RS11820at 2631.803 kb on - strand, within LRK53_RS11820at 2631.803 kb on - strand, within LRK53_RS11820at 2631.803 kb on - strand, within LRK53_RS11820at 2631.803 kb on - strand, within LRK53_RS11820at 2631.803 kb on - strand, within LRK53_RS11820at 2632.067 kb on + strand, within LRK53_RS11820at 2632.067 kb on + strand, within LRK53_RS11820at 2632.067 kb on + strand, within LRK53_RS11820at 2632.067 kb on + strand, within LRK53_RS11820at 2632.067 kb on + strand, within LRK53_RS11820at 2632.068 kb on - strand, within LRK53_RS11820at 2632.068 kb on - strand, within LRK53_RS11820at 2632.068 kb on - strand, within LRK53_RS11820at 2632.068 kb on - strand, within LRK53_RS11820at 2632.068 kb on - strand, within LRK53_RS11820at 2632.068 kb on - strand, within LRK53_RS11820at 2632.300 kb on + strand, within LRK53_RS11820at 2632.360 kb on + strand, within LRK53_RS11820at 2632.360 kb on + strand, within LRK53_RS11820at 2632.361 kb on - strand, within LRK53_RS11820at 2632.361 kb on - strand, within LRK53_RS11820at 2632.361 kb on - strand, within LRK53_RS11820at 2632.381 kb on + strand, within LRK53_RS11820at 2632.381 kb on + strand, within LRK53_RS11820at 2632.382 kb on - strand, within LRK53_RS11820at 2632.382 kb on - strand, within LRK53_RS11820at 2632.382 kb on - strand, within LRK53_RS11820

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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2,630,753 + +0.9
2,630,753 + +0.9
2,630,849 + -1.4
2,630,850 - -0.7
2,631,378 + -1.0
2,631,379 - -0.4
2,631,380 + -1.6
2,631,380 + +0.1
2,631,380 + -2.3
2,631,380 + -1.1
2,631,380 + -0.3
2,631,380 + +1.5
2,631,380 + -0.7
2,631,381 - LRK53_RS11815 0.10 -0.1
2,631,381 - LRK53_RS11815 0.10 -1.1
2,631,381 - LRK53_RS11815 0.10 -0.1
2,631,381 - LRK53_RS11815 0.10 +0.4
2,631,381 - LRK53_RS11815 0.10 -1.1
2,631,381 - LRK53_RS11815 0.10 -1.1
2,631,381 - LRK53_RS11815 0.10 +0.3
2,631,381 - LRK53_RS11815 0.10 +0.9
2,631,381 - LRK53_RS11815 0.10 -0.1
2,631,381 - LRK53_RS11815 0.10 -1.4
2,631,381 - LRK53_RS11815 0.10 +1.9
2,631,381 - LRK53_RS11815 0.10 +0.6
2,631,381 - LRK53_RS11815 0.10 -0.9
2,631,381 - LRK53_RS11815 0.10 +0.2
2,631,381 - LRK53_RS11815 0.10 +0.2
2,631,381 - LRK53_RS11815 0.10 -1.7
2,631,381 - LRK53_RS11815 0.10 -0.6
2,631,381 - LRK53_RS11815 0.10 +0.3
2,631,422 + LRK53_RS11815 0.32 +0.9
2,631,422 + LRK53_RS11815 0.32 -0.1
2,631,423 - LRK53_RS11815 0.32 -0.7
2,631,423 - LRK53_RS11815 0.32 +1.9
2,631,506 + LRK53_RS11815 0.76 +0.6
2,631,506 + LRK53_RS11815 0.76 -0.5
2,631,507 - LRK53_RS11815 0.76 +0.0
2,631,607 + +0.6
2,631,607 + +0.5
2,631,607 + -1.1
2,631,608 - -1.1
2,631,745 + +0.9
2,631,802 + LRK53_RS11820 0.12 -1.7
2,631,802 + LRK53_RS11820 0.12 -1.7
2,631,802 + LRK53_RS11820 0.12 +1.5
2,631,802 + LRK53_RS11820 0.12 +0.2
2,631,802 + LRK53_RS11820 0.12 +0.6
2,631,802 + LRK53_RS11820 0.12 -0.5
2,631,802 + LRK53_RS11820 0.12 +0.9
2,631,802 + LRK53_RS11820 0.12 -1.1
2,631,803 - LRK53_RS11820 0.13 -0.3
2,631,803 - LRK53_RS11820 0.13 +0.2
2,631,803 - LRK53_RS11820 0.13 -1.7
2,631,803 - LRK53_RS11820 0.13 -1.3
2,631,803 - LRK53_RS11820 0.13 -0.5
2,631,803 - LRK53_RS11820 0.13 +0.4
2,631,803 - LRK53_RS11820 0.13 +0.9
2,631,803 - LRK53_RS11820 0.13 -1.1
2,631,803 - LRK53_RS11820 0.13 +0.9
2,632,067 + LRK53_RS11820 0.31 -1.4
2,632,067 + LRK53_RS11820 0.31 -0.8
2,632,067 + LRK53_RS11820 0.31 -1.1
2,632,067 + LRK53_RS11820 0.31 -1.0
2,632,067 + LRK53_RS11820 0.31 +1.9
2,632,068 - LRK53_RS11820 0.31 +1.9
2,632,068 - LRK53_RS11820 0.31 -1.3
2,632,068 - LRK53_RS11820 0.31 -1.0
2,632,068 - LRK53_RS11820 0.31 -1.4
2,632,068 - LRK53_RS11820 0.31 +0.3
2,632,068 - LRK53_RS11820 0.31 -1.4
2,632,300 + LRK53_RS11820 0.46 -0.5
2,632,360 + LRK53_RS11820 0.51 +0.5
2,632,360 + LRK53_RS11820 0.51 -0.4
2,632,361 - LRK53_RS11820 0.51 -0.7
2,632,361 - LRK53_RS11820 0.51 +0.9
2,632,361 - LRK53_RS11820 0.51 +0.9
2,632,381 + LRK53_RS11820 0.52 -0.9
2,632,381 + LRK53_RS11820 0.52 -0.5
2,632,382 - LRK53_RS11820 0.52 +0.2
2,632,382 - LRK53_RS11820 0.52 +2.9
2,632,382 - LRK53_RS11820 0.52 -1.4

Or see this region's nucleotide sequence