Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11380

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11370 and LRK53_RS11375 are separated by 41 nucleotidesLRK53_RS11375 and LRK53_RS11380 are separated by 51 nucleotidesLRK53_RS11380 and LRK53_RS11385 are separated by 105 nucleotides LRK53_RS11370: LRK53_RS11370 - 2OG-Fe(II) oxygenase, at 2,535,176 to 2,535,871 _RS11370 LRK53_RS11375: LRK53_RS11375 - 4-hydroxy-tetrahydrodipicolinate reductase, at 2,535,913 to 2,536,713 _RS11375 LRK53_RS11380: LRK53_RS11380 - molecular chaperone DnaJ, at 2,536,765 to 2,537,892 _RS11380 LRK53_RS11385: LRK53_RS11385 - molecular chaperone DnaK, at 2,537,998 to 2,539,914 _RS11385 Position (kb) 2536 2537 2538Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.741 kb on + strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.742 kb on - strandat 2536.748 kb on + strandat 2536.766 kb on + strandat 2536.766 kb on + strandat 2536.766 kb on + strandat 2536.766 kb on + strandat 2536.766 kb on + strandat 2536.766 kb on + strandat 2536.766 kb on + strandat 2536.767 kb on - strandat 2536.767 kb on - strandat 2536.767 kb on - strandat 2536.773 kb on + strandat 2536.774 kb on - strandat 2537.089 kb on + strand, within LRK53_RS11380at 2537.105 kb on + strand, within LRK53_RS11380at 2537.105 kb on + strand, within LRK53_RS11380at 2537.105 kb on + strand, within LRK53_RS11380at 2537.105 kb on + strand, within LRK53_RS11380at 2537.105 kb on + strand, within LRK53_RS11380at 2537.105 kb on + strand, within LRK53_RS11380at 2537.105 kb on + strand, within LRK53_RS11380at 2537.106 kb on - strand, within LRK53_RS11380at 2537.106 kb on - strand, within LRK53_RS11380at 2537.106 kb on - strand, within LRK53_RS11380at 2537.106 kb on - strand, within LRK53_RS11380at 2537.106 kb on - strand, within LRK53_RS11380at 2537.106 kb on - strand, within LRK53_RS11380at 2537.106 kb on - strand, within LRK53_RS11380at 2537.162 kb on + strand, within LRK53_RS11380at 2537.162 kb on + strand, within LRK53_RS11380at 2537.162 kb on + strand, within LRK53_RS11380at 2537.162 kb on + strand, within LRK53_RS11380at 2537.162 kb on + strand, within LRK53_RS11380at 2537.162 kb on + strand, within LRK53_RS11380at 2537.163 kb on - strand, within LRK53_RS11380at 2537.163 kb on - strand, within LRK53_RS11380at 2537.163 kb on - strand, within LRK53_RS11380at 2537.163 kb on - strand, within LRK53_RS11380at 2537.163 kb on - strand, within LRK53_RS11380at 2537.163 kb on - strand, within LRK53_RS11380at 2537.163 kb on - strand, within LRK53_RS11380at 2537.260 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.537 kb on + strand, within LRK53_RS11380at 2537.538 kb on - strand, within LRK53_RS11380at 2537.538 kb on - strand, within LRK53_RS11380at 2537.538 kb on - strand, within LRK53_RS11380at 2537.538 kb on - strand, within LRK53_RS11380at 2537.538 kb on - strand, within LRK53_RS11380at 2537.538 kb on - strand, within LRK53_RS11380at 2537.538 kb on - strand, within LRK53_RS11380at 2537.538 kb on - strand, within LRK53_RS11380at 2537.538 kb on - strand, within LRK53_RS11380at 2537.538 kb on - strand, within LRK53_RS11380at 2537.538 kb on - strand, within LRK53_RS11380at 2537.999 kb on + strandat 2538.000 kb on - strandat 2538.000 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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2,536,741 + -0.1
2,536,741 + +0.3
2,536,741 + -0.1
2,536,741 + -0.1
2,536,741 + -0.6
2,536,741 + -0.6
2,536,741 + -1.1
2,536,741 + -0.4
2,536,741 + +0.9
2,536,741 + -1.0
2,536,741 + -0.8
2,536,741 + +0.5
2,536,741 + -0.4
2,536,741 + -1.1
2,536,741 + -1.5
2,536,741 + +0.9
2,536,741 + +0.9
2,536,741 + -1.4
2,536,741 + -2.8
2,536,741 + -0.1
2,536,741 + -0.4
2,536,741 + -0.9
2,536,741 + -1.5
2,536,741 + -0.4
2,536,741 + +0.6
2,536,741 + -0.4
2,536,741 + -0.9
2,536,741 + -1.1
2,536,741 + -0.2
2,536,741 + -0.3
2,536,741 + -0.1
2,536,741 + -0.7
2,536,741 + +0.9
2,536,741 + -1.4
2,536,741 + +0.6
2,536,741 + -2.1
2,536,741 + +0.9
2,536,741 + -0.0
2,536,741 + -0.1
2,536,741 + +0.9
2,536,741 + -2.4
2,536,741 + -2.1
2,536,741 + +0.0
2,536,741 + -0.6
2,536,741 + -0.9
2,536,741 + -0.4
2,536,741 + -0.8
2,536,741 + +0.5
2,536,741 + +1.5
2,536,741 + -0.9
2,536,741 + -1.0
2,536,741 + +0.9
2,536,741 + +0.3
2,536,741 + +2.5
2,536,741 + +0.9
2,536,741 + +0.9
2,536,741 + -2.3
2,536,741 + -0.1
2,536,741 + +0.5
2,536,741 + +0.3
2,536,741 + -1.4
2,536,741 + +0.9
2,536,741 + -0.9
2,536,741 + -1.1
2,536,741 + -1.1
2,536,741 + -2.1
2,536,741 + +0.6
2,536,741 + -2.0
2,536,741 + -1.1
2,536,741 + -0.5
2,536,741 + -0.1
2,536,741 + -1.9
2,536,741 + -0.1
2,536,741 + +1.6
2,536,741 + -0.7
2,536,741 + +0.3
2,536,741 + -0.7
2,536,741 + -0.7
2,536,741 + -0.1
2,536,741 + +0.4
2,536,741 + +0.9
2,536,741 + +0.1
2,536,741 + -1.3
2,536,741 + -0.5
2,536,742 - -0.8
2,536,742 - +1.6
2,536,742 - +0.3
2,536,742 - -0.0
2,536,742 - +0.5
2,536,742 - -0.3
2,536,742 - +0.5
2,536,742 - +0.1
2,536,742 - +0.9
2,536,742 - -0.1
2,536,742 - +0.9
2,536,742 - -0.3
2,536,742 - -1.1
2,536,742 - +0.1
2,536,742 - -1.1
2,536,742 - -1.4
2,536,742 - -1.1
2,536,742 - +0.9
2,536,742 - -2.7
2,536,742 - -0.1
2,536,742 - -1.1
2,536,742 - +0.9
2,536,742 - -1.3
2,536,742 - -0.7
2,536,742 - +1.9
2,536,742 - -0.4
2,536,742 - -1.1
2,536,742 - -1.4
2,536,742 - +0.3
2,536,742 - -0.6
2,536,742 - -0.1
2,536,742 - +0.9
2,536,742 - -1.1
2,536,742 - +0.1
2,536,742 - -0.7
2,536,742 - +0.9
2,536,742 - -0.2
2,536,742 - -2.1
2,536,742 - -0.7
2,536,742 - -1.4
2,536,742 - +0.1
2,536,742 - -1.6
2,536,742 - -1.9
2,536,742 - -0.9
2,536,742 - +0.5
2,536,742 - -0.7
2,536,742 - +0.5
2,536,742 - -0.1
2,536,742 - -1.4
2,536,742 - -0.1
2,536,742 - +1.6
2,536,742 - +0.1
2,536,742 - +0.9
2,536,742 - +0.3
2,536,742 - -1.4
2,536,742 - +0.6
2,536,742 - +0.1
2,536,742 - +0.3
2,536,742 - -0.4
2,536,742 - -0.7
2,536,742 - +0.1
2,536,742 - +1.6
2,536,742 - +1.5
2,536,742 - -0.1
2,536,742 - -0.1
2,536,742 - +0.3
2,536,742 - +0.9
2,536,742 - -0.3
2,536,742 - +0.7
2,536,742 - -0.1
2,536,742 - -2.8
2,536,742 - -0.1
2,536,742 - +0.3
2,536,742 - +2.2
2,536,748 + -2.6
2,536,766 + -1.7
2,536,766 + +0.3
2,536,766 + +0.5
2,536,766 + -0.1
2,536,766 + -0.1
2,536,766 + +0.3
2,536,766 + -0.7
2,536,767 - +0.1
2,536,767 - -0.1
2,536,767 - -1.0
2,536,773 + +0.9
2,536,774 - +1.3
2,537,089 + LRK53_RS11380 0.29 +0.2
2,537,105 + LRK53_RS11380 0.30 -0.1
2,537,105 + LRK53_RS11380 0.30 +1.2
2,537,105 + LRK53_RS11380 0.30 +1.9
2,537,105 + LRK53_RS11380 0.30 +0.3
2,537,105 + LRK53_RS11380 0.30 -0.4
2,537,105 + LRK53_RS11380 0.30 -1.0
2,537,105 + LRK53_RS11380 0.30 -0.4
2,537,106 - LRK53_RS11380 0.30 +0.9
2,537,106 - LRK53_RS11380 0.30 +0.9
2,537,106 - LRK53_RS11380 0.30 -1.7
2,537,106 - LRK53_RS11380 0.30 -0.7
2,537,106 - LRK53_RS11380 0.30 +1.1
2,537,106 - LRK53_RS11380 0.30 -0.7
2,537,106 - LRK53_RS11380 0.30 -0.3
2,537,162 + LRK53_RS11380 0.35 +1.3
2,537,162 + LRK53_RS11380 0.35 +1.5
2,537,162 + LRK53_RS11380 0.35 -0.1
2,537,162 + LRK53_RS11380 0.35 +0.9
2,537,162 + LRK53_RS11380 0.35 -0.7
2,537,162 + LRK53_RS11380 0.35 -0.9
2,537,163 - LRK53_RS11380 0.35 -0.4
2,537,163 - LRK53_RS11380 0.35 +0.9
2,537,163 - LRK53_RS11380 0.35 +0.9
2,537,163 - LRK53_RS11380 0.35 +0.0
2,537,163 - LRK53_RS11380 0.35 +0.9
2,537,163 - LRK53_RS11380 0.35 +0.3
2,537,163 - LRK53_RS11380 0.35 +1.9
2,537,260 + LRK53_RS11380 0.44 +1.2
2,537,537 + LRK53_RS11380 0.68 +0.5
2,537,537 + LRK53_RS11380 0.68 +0.6
2,537,537 + LRK53_RS11380 0.68 +0.2
2,537,537 + LRK53_RS11380 0.68 +0.1
2,537,537 + LRK53_RS11380 0.68 -0.1
2,537,537 + LRK53_RS11380 0.68 +1.3
2,537,537 + LRK53_RS11380 0.68 -0.1
2,537,537 + LRK53_RS11380 0.68 +1.2
2,537,537 + LRK53_RS11380 0.68 +0.9
2,537,537 + LRK53_RS11380 0.68 +1.5
2,537,537 + LRK53_RS11380 0.68 -0.7
2,537,537 + LRK53_RS11380 0.68 -1.4
2,537,537 + LRK53_RS11380 0.68 +2.5
2,537,537 + LRK53_RS11380 0.68 +2.5
2,537,537 + LRK53_RS11380 0.68 +0.9
2,537,537 + LRK53_RS11380 0.68 +0.5
2,537,537 + LRK53_RS11380 0.68 -0.3
2,537,537 + LRK53_RS11380 0.68 +0.3
2,537,537 + LRK53_RS11380 0.68 -0.7
2,537,537 + LRK53_RS11380 0.68 +2.5
2,537,537 + LRK53_RS11380 0.68 -0.4
2,537,538 - LRK53_RS11380 0.69 -0.1
2,537,538 - LRK53_RS11380 0.69 -0.1
2,537,538 - LRK53_RS11380 0.69 -0.3
2,537,538 - LRK53_RS11380 0.69 -1.1
2,537,538 - LRK53_RS11380 0.69 -1.4
2,537,538 - LRK53_RS11380 0.69 -0.0
2,537,538 - LRK53_RS11380 0.69 +1.5
2,537,538 - LRK53_RS11380 0.69 +0.1
2,537,538 - LRK53_RS11380 0.69 +0.9
2,537,538 - LRK53_RS11380 0.69 -0.2
2,537,538 - LRK53_RS11380 0.69 -2.3
2,537,999 + +0.5
2,538,000 - -1.6
2,538,000 - -1.7

Or see this region's nucleotide sequence