Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11370 and LRK53_RS11375 are separated by 41 nucleotides LRK53_RS11375 and LRK53_RS11380 are separated by 51 nucleotides LRK53_RS11380 and LRK53_RS11385 are separated by 105 nucleotides
LRK53_RS11370: LRK53_RS11370 - 2OG-Fe(II) oxygenase, at 2,535,176 to 2,535,871
_RS11370
LRK53_RS11375: LRK53_RS11375 - 4-hydroxy-tetrahydrodipicolinate reductase, at 2,535,913 to 2,536,713
_RS11375
LRK53_RS11380: LRK53_RS11380 - molecular chaperone DnaJ, at 2,536,765 to 2,537,892
_RS11380
LRK53_RS11385: LRK53_RS11385 - molecular chaperone DnaK, at 2,537,998 to 2,539,914
_RS11385
Position (kb)
2536
2537
2538 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.741 kb on + strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.742 kb on - strand at 2536.748 kb on + strand at 2536.766 kb on + strand at 2536.766 kb on + strand at 2536.766 kb on + strand at 2536.766 kb on + strand at 2536.766 kb on + strand at 2536.766 kb on + strand at 2536.766 kb on + strand at 2536.767 kb on - strand at 2536.767 kb on - strand at 2536.767 kb on - strand at 2536.773 kb on + strand at 2536.774 kb on - strand at 2537.089 kb on + strand, within LRK53_RS11380 at 2537.105 kb on + strand, within LRK53_RS11380 at 2537.105 kb on + strand, within LRK53_RS11380 at 2537.105 kb on + strand, within LRK53_RS11380 at 2537.105 kb on + strand, within LRK53_RS11380 at 2537.105 kb on + strand, within LRK53_RS11380 at 2537.105 kb on + strand, within LRK53_RS11380 at 2537.105 kb on + strand, within LRK53_RS11380 at 2537.106 kb on - strand, within LRK53_RS11380 at 2537.106 kb on - strand, within LRK53_RS11380 at 2537.106 kb on - strand, within LRK53_RS11380 at 2537.106 kb on - strand, within LRK53_RS11380 at 2537.106 kb on - strand, within LRK53_RS11380 at 2537.106 kb on - strand, within LRK53_RS11380 at 2537.106 kb on - strand, within LRK53_RS11380 at 2537.162 kb on + strand, within LRK53_RS11380 at 2537.162 kb on + strand, within LRK53_RS11380 at 2537.162 kb on + strand, within LRK53_RS11380 at 2537.162 kb on + strand, within LRK53_RS11380 at 2537.162 kb on + strand, within LRK53_RS11380 at 2537.162 kb on + strand, within LRK53_RS11380 at 2537.163 kb on - strand, within LRK53_RS11380 at 2537.163 kb on - strand, within LRK53_RS11380 at 2537.163 kb on - strand, within LRK53_RS11380 at 2537.163 kb on - strand, within LRK53_RS11380 at 2537.163 kb on - strand, within LRK53_RS11380 at 2537.163 kb on - strand, within LRK53_RS11380 at 2537.163 kb on - strand, within LRK53_RS11380 at 2537.260 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.537 kb on + strand, within LRK53_RS11380 at 2537.538 kb on - strand, within LRK53_RS11380 at 2537.538 kb on - strand, within LRK53_RS11380 at 2537.538 kb on - strand, within LRK53_RS11380 at 2537.538 kb on - strand, within LRK53_RS11380 at 2537.538 kb on - strand, within LRK53_RS11380 at 2537.538 kb on - strand, within LRK53_RS11380 at 2537.538 kb on - strand, within LRK53_RS11380 at 2537.538 kb on - strand, within LRK53_RS11380 at 2537.538 kb on - strand, within LRK53_RS11380 at 2537.538 kb on - strand, within LRK53_RS11380 at 2537.538 kb on - strand, within LRK53_RS11380 at 2537.999 kb on + strand at 2538.000 kb on - strand at 2538.000 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM remove 2,536,741 + -0.1 2,536,741 + +0.3 2,536,741 + -0.1 2,536,741 + -0.1 2,536,741 + -0.6 2,536,741 + -0.6 2,536,741 + -1.1 2,536,741 + -0.4 2,536,741 + +0.9 2,536,741 + -1.0 2,536,741 + -0.8 2,536,741 + +0.5 2,536,741 + -0.4 2,536,741 + -1.1 2,536,741 + -1.5 2,536,741 + +0.9 2,536,741 + +0.9 2,536,741 + -1.4 2,536,741 + -2.8 2,536,741 + -0.1 2,536,741 + -0.4 2,536,741 + -0.9 2,536,741 + -1.5 2,536,741 + -0.4 2,536,741 + +0.6 2,536,741 + -0.4 2,536,741 + -0.9 2,536,741 + -1.1 2,536,741 + -0.2 2,536,741 + -0.3 2,536,741 + -0.1 2,536,741 + -0.7 2,536,741 + +0.9 2,536,741 + -1.4 2,536,741 + +0.6 2,536,741 + -2.1 2,536,741 + +0.9 2,536,741 + -0.0 2,536,741 + -0.1 2,536,741 + +0.9 2,536,741 + -2.4 2,536,741 + -2.1 2,536,741 + +0.0 2,536,741 + -0.6 2,536,741 + -0.9 2,536,741 + -0.4 2,536,741 + -0.8 2,536,741 + +0.5 2,536,741 + +1.5 2,536,741 + -0.9 2,536,741 + -1.0 2,536,741 + +0.9 2,536,741 + +0.3 2,536,741 + +2.5 2,536,741 + +0.9 2,536,741 + +0.9 2,536,741 + -2.3 2,536,741 + -0.1 2,536,741 + +0.5 2,536,741 + +0.3 2,536,741 + -1.4 2,536,741 + +0.9 2,536,741 + -0.9 2,536,741 + -1.1 2,536,741 + -1.1 2,536,741 + -2.1 2,536,741 + +0.6 2,536,741 + -2.0 2,536,741 + -1.1 2,536,741 + -0.5 2,536,741 + -0.1 2,536,741 + -1.9 2,536,741 + -0.1 2,536,741 + +1.6 2,536,741 + -0.7 2,536,741 + +0.3 2,536,741 + -0.7 2,536,741 + -0.7 2,536,741 + -0.1 2,536,741 + +0.4 2,536,741 + +0.9 2,536,741 + +0.1 2,536,741 + -1.3 2,536,741 + -0.5 2,536,742 - -0.8 2,536,742 - +1.6 2,536,742 - +0.3 2,536,742 - -0.0 2,536,742 - +0.5 2,536,742 - -0.3 2,536,742 - +0.5 2,536,742 - +0.1 2,536,742 - +0.9 2,536,742 - -0.1 2,536,742 - +0.9 2,536,742 - -0.3 2,536,742 - -1.1 2,536,742 - +0.1 2,536,742 - -1.1 2,536,742 - -1.4 2,536,742 - -1.1 2,536,742 - +0.9 2,536,742 - -2.7 2,536,742 - -0.1 2,536,742 - -1.1 2,536,742 - +0.9 2,536,742 - -1.3 2,536,742 - -0.7 2,536,742 - +1.9 2,536,742 - -0.4 2,536,742 - -1.1 2,536,742 - -1.4 2,536,742 - +0.3 2,536,742 - -0.6 2,536,742 - -0.1 2,536,742 - +0.9 2,536,742 - -1.1 2,536,742 - +0.1 2,536,742 - -0.7 2,536,742 - +0.9 2,536,742 - -0.2 2,536,742 - -2.1 2,536,742 - -0.7 2,536,742 - -1.4 2,536,742 - +0.1 2,536,742 - -1.6 2,536,742 - -1.9 2,536,742 - -0.9 2,536,742 - +0.5 2,536,742 - -0.7 2,536,742 - +0.5 2,536,742 - -0.1 2,536,742 - -1.4 2,536,742 - -0.1 2,536,742 - +1.6 2,536,742 - +0.1 2,536,742 - +0.9 2,536,742 - +0.3 2,536,742 - -1.4 2,536,742 - +0.6 2,536,742 - +0.1 2,536,742 - +0.3 2,536,742 - -0.4 2,536,742 - -0.7 2,536,742 - +0.1 2,536,742 - +1.6 2,536,742 - +1.5 2,536,742 - -0.1 2,536,742 - -0.1 2,536,742 - +0.3 2,536,742 - +0.9 2,536,742 - -0.3 2,536,742 - +0.7 2,536,742 - -0.1 2,536,742 - -2.8 2,536,742 - -0.1 2,536,742 - +0.3 2,536,742 - +2.2 2,536,748 + -2.6 2,536,766 + -1.7 2,536,766 + +0.3 2,536,766 + +0.5 2,536,766 + -0.1 2,536,766 + -0.1 2,536,766 + +0.3 2,536,766 + -0.7 2,536,767 - +0.1 2,536,767 - -0.1 2,536,767 - -1.0 2,536,773 + +0.9 2,536,774 - +1.3 2,537,089 + LRK53_RS11380 0.29 +0.2 2,537,105 + LRK53_RS11380 0.30 -0.1 2,537,105 + LRK53_RS11380 0.30 +1.2 2,537,105 + LRK53_RS11380 0.30 +1.9 2,537,105 + LRK53_RS11380 0.30 +0.3 2,537,105 + LRK53_RS11380 0.30 -0.4 2,537,105 + LRK53_RS11380 0.30 -1.0 2,537,105 + LRK53_RS11380 0.30 -0.4 2,537,106 - LRK53_RS11380 0.30 +0.9 2,537,106 - LRK53_RS11380 0.30 +0.9 2,537,106 - LRK53_RS11380 0.30 -1.7 2,537,106 - LRK53_RS11380 0.30 -0.7 2,537,106 - LRK53_RS11380 0.30 +1.1 2,537,106 - LRK53_RS11380 0.30 -0.7 2,537,106 - LRK53_RS11380 0.30 -0.3 2,537,162 + LRK53_RS11380 0.35 +1.3 2,537,162 + LRK53_RS11380 0.35 +1.5 2,537,162 + LRK53_RS11380 0.35 -0.1 2,537,162 + LRK53_RS11380 0.35 +0.9 2,537,162 + LRK53_RS11380 0.35 -0.7 2,537,162 + LRK53_RS11380 0.35 -0.9 2,537,163 - LRK53_RS11380 0.35 -0.4 2,537,163 - LRK53_RS11380 0.35 +0.9 2,537,163 - LRK53_RS11380 0.35 +0.9 2,537,163 - LRK53_RS11380 0.35 +0.0 2,537,163 - LRK53_RS11380 0.35 +0.9 2,537,163 - LRK53_RS11380 0.35 +0.3 2,537,163 - LRK53_RS11380 0.35 +1.9 2,537,260 + LRK53_RS11380 0.44 +1.2 2,537,537 + LRK53_RS11380 0.68 +0.5 2,537,537 + LRK53_RS11380 0.68 +0.6 2,537,537 + LRK53_RS11380 0.68 +0.2 2,537,537 + LRK53_RS11380 0.68 +0.1 2,537,537 + LRK53_RS11380 0.68 -0.1 2,537,537 + LRK53_RS11380 0.68 +1.3 2,537,537 + LRK53_RS11380 0.68 -0.1 2,537,537 + LRK53_RS11380 0.68 +1.2 2,537,537 + LRK53_RS11380 0.68 +0.9 2,537,537 + LRK53_RS11380 0.68 +1.5 2,537,537 + LRK53_RS11380 0.68 -0.7 2,537,537 + LRK53_RS11380 0.68 -1.4 2,537,537 + LRK53_RS11380 0.68 +2.5 2,537,537 + LRK53_RS11380 0.68 +2.5 2,537,537 + LRK53_RS11380 0.68 +0.9 2,537,537 + LRK53_RS11380 0.68 +0.5 2,537,537 + LRK53_RS11380 0.68 -0.3 2,537,537 + LRK53_RS11380 0.68 +0.3 2,537,537 + LRK53_RS11380 0.68 -0.7 2,537,537 + LRK53_RS11380 0.68 +2.5 2,537,537 + LRK53_RS11380 0.68 -0.4 2,537,538 - LRK53_RS11380 0.69 -0.1 2,537,538 - LRK53_RS11380 0.69 -0.1 2,537,538 - LRK53_RS11380 0.69 -0.3 2,537,538 - LRK53_RS11380 0.69 -1.1 2,537,538 - LRK53_RS11380 0.69 -1.4 2,537,538 - LRK53_RS11380 0.69 -0.0 2,537,538 - LRK53_RS11380 0.69 +1.5 2,537,538 - LRK53_RS11380 0.69 +0.1 2,537,538 - LRK53_RS11380 0.69 +0.9 2,537,538 - LRK53_RS11380 0.69 -0.2 2,537,538 - LRK53_RS11380 0.69 -2.3 2,537,999 + +0.5 2,538,000 - -1.6 2,538,000 - -1.7
Or see this region's nucleotide sequence