Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS10770 and LRK53_RS10775 are separated by 138 nucleotides LRK53_RS10775 and LRK53_RS10780 are separated by 221 nucleotides
LRK53_RS10770: LRK53_RS10770 - hypothetical protein, at 2,406,334 to 2,406,993
_RS10770
LRK53_RS10775: LRK53_RS10775 - hypothetical protein, at 2,407,132 to 2,407,485
_RS10775
LRK53_RS10780: LRK53_RS10780 - DNA-binding protein, at 2,407,707 to 2,408,639
_RS10780
Position (kb)
2407
2408 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2406.159 kb on + strand at 2406.159 kb on + strand at 2406.159 kb on + strand at 2406.160 kb on - strand at 2406.160 kb on - strand at 2406.160 kb on - strand at 2406.160 kb on - strand at 2406.195 kb on + strand at 2406.195 kb on + strand at 2406.196 kb on - strand at 2406.196 kb on - strand at 2406.196 kb on - strand at 2406.196 kb on - strand at 2406.196 kb on - strand at 2406.196 kb on - strand at 2406.242 kb on - strand at 2406.242 kb on - strand at 2406.242 kb on - strand at 2406.242 kb on - strand at 2406.242 kb on - strand at 2406.248 kb on - strand at 2406.248 kb on - strand at 2406.248 kb on - strand at 2406.267 kb on + strand at 2406.267 kb on + strand at 2406.267 kb on + strand at 2406.267 kb on + strand at 2406.267 kb on + strand at 2406.268 kb on - strand at 2406.268 kb on - strand at 2406.268 kb on - strand at 2406.268 kb on - strand at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.448 kb on + strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.449 kb on - strand, within LRK53_RS10770 at 2406.505 kb on + strand, within LRK53_RS10770 at 2406.505 kb on + strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.506 kb on - strand, within LRK53_RS10770 at 2406.580 kb on + strand, within LRK53_RS10770 at 2406.580 kb on + strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.581 kb on - strand, within LRK53_RS10770 at 2406.899 kb on + strand, within LRK53_RS10770 at 2406.900 kb on - strand, within LRK53_RS10770 at 2406.918 kb on - strand, within LRK53_RS10770 at 2406.918 kb on - strand, within LRK53_RS10770 at 2407.028 kb on - strand at 2407.028 kb on - strand at 2407.126 kb on + strand at 2407.126 kb on + strand at 2407.298 kb on + strand, within LRK53_RS10775 at 2407.298 kb on + strand, within LRK53_RS10775 at 2407.299 kb on - strand, within LRK53_RS10775 at 2407.441 kb on + strand, within LRK53_RS10775 at 2407.442 kb on - strand, within LRK53_RS10775 at 2407.490 kb on + strand at 2407.490 kb on + strand at 2407.490 kb on + strand at 2407.490 kb on + strand at 2407.490 kb on + strand at 2407.491 kb on - strand at 2407.491 kb on - strand at 2407.491 kb on - strand at 2407.491 kb on - strand at 2407.530 kb on + strand at 2407.530 kb on + strand at 2407.530 kb on + strand at 2407.530 kb on + strand at 2407.531 kb on - strand at 2407.531 kb on - strand at 2407.531 kb on - strand at 2407.561 kb on + strand at 2407.561 kb on + strand at 2407.561 kb on + strand at 2407.562 kb on - strand at 2407.778 kb on + strand at 2407.785 kb on + strand at 2407.785 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM remove 2,406,159 + -1.6 2,406,159 + +0.3 2,406,159 + +0.9 2,406,160 - -0.1 2,406,160 - -0.1 2,406,160 - -0.7 2,406,160 - -0.8 2,406,195 + -2.9 2,406,195 + -1.4 2,406,196 - -1.1 2,406,196 - -0.0 2,406,196 - -0.4 2,406,196 - -0.0 2,406,196 - +0.3 2,406,196 - -0.3 2,406,242 - +0.7 2,406,242 - -0.1 2,406,242 - +1.5 2,406,242 - -1.2 2,406,242 - -0.4 2,406,248 - -2.1 2,406,248 - +1.1 2,406,248 - -0.4 2,406,267 + +0.9 2,406,267 + -0.7 2,406,267 + -0.1 2,406,267 + -0.4 2,406,267 + -0.4 2,406,268 - +0.0 2,406,268 - -0.0 2,406,268 - -0.5 2,406,268 - -1.7 2,406,448 + LRK53_RS10770 0.17 -0.7 2,406,448 + LRK53_RS10770 0.17 -1.1 2,406,448 + LRK53_RS10770 0.17 -1.4 2,406,448 + LRK53_RS10770 0.17 -0.8 2,406,448 + LRK53_RS10770 0.17 -0.0 2,406,448 + LRK53_RS10770 0.17 -1.1 2,406,448 + LRK53_RS10770 0.17 -0.4 2,406,449 - LRK53_RS10770 0.17 -0.1 2,406,449 - LRK53_RS10770 0.17 +0.6 2,406,449 - LRK53_RS10770 0.17 -0.5 2,406,449 - LRK53_RS10770 0.17 -1.1 2,406,449 - LRK53_RS10770 0.17 -0.1 2,406,449 - LRK53_RS10770 0.17 +2.5 2,406,449 - LRK53_RS10770 0.17 +0.2 2,406,449 - LRK53_RS10770 0.17 -0.1 2,406,449 - LRK53_RS10770 0.17 -0.4 2,406,449 - LRK53_RS10770 0.17 +0.0 2,406,505 + LRK53_RS10770 0.26 -2.1 2,406,505 + LRK53_RS10770 0.26 -1.1 2,406,506 - LRK53_RS10770 0.26 +0.5 2,406,506 - LRK53_RS10770 0.26 -1.9 2,406,506 - LRK53_RS10770 0.26 -1.5 2,406,506 - LRK53_RS10770 0.26 -0.7 2,406,506 - LRK53_RS10770 0.26 -0.7 2,406,506 - LRK53_RS10770 0.26 +0.2 2,406,580 + LRK53_RS10770 0.37 -1.1 2,406,580 + LRK53_RS10770 0.37 -1.4 2,406,581 - LRK53_RS10770 0.37 -0.9 2,406,581 - LRK53_RS10770 0.37 -1.1 2,406,581 - LRK53_RS10770 0.37 -0.4 2,406,581 - LRK53_RS10770 0.37 -0.4 2,406,581 - LRK53_RS10770 0.37 -0.7 2,406,581 - LRK53_RS10770 0.37 -0.1 2,406,581 - LRK53_RS10770 0.37 +0.9 2,406,899 + LRK53_RS10770 0.86 -0.7 2,406,900 - LRK53_RS10770 0.86 -0.4 2,406,918 - LRK53_RS10770 0.88 +0.6 2,406,918 - LRK53_RS10770 0.88 -1.9 2,407,028 - +0.5 2,407,028 - +1.5 2,407,126 + +0.9 2,407,126 + +0.4 2,407,298 + LRK53_RS10775 0.47 +0.9 2,407,298 + LRK53_RS10775 0.47 -0.4 2,407,299 - LRK53_RS10775 0.47 -0.3 2,407,441 + LRK53_RS10775 0.87 +0.2 2,407,442 - LRK53_RS10775 0.88 +0.4 2,407,490 + +0.9 2,407,490 + -1.4 2,407,490 + -1.1 2,407,490 + -0.4 2,407,490 + -1.1 2,407,491 - +0.3 2,407,491 - +0.9 2,407,491 - -0.6 2,407,491 - +0.7 2,407,530 + -0.3 2,407,530 + -0.4 2,407,530 + +1.2 2,407,530 + -1.1 2,407,531 - -0.5 2,407,531 - +1.9 2,407,531 - +0.9 2,407,561 + -1.4 2,407,561 + +0.9 2,407,561 + -0.3 2,407,562 - +0.3 2,407,778 + +0.9 2,407,785 + +0.4 2,407,785 + -0.4
Or see this region's nucleotide sequence