Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09655 and LRK53_RS09660 overlap by 4 nucleotides LRK53_RS09660 and LRK53_RS09665 overlap by 4 nucleotides LRK53_RS09665 and LRK53_RS09670 are separated by 76 nucleotides LRK53_RS09670 and LRK53_RS09675 are separated by 105 nucleotides
LRK53_RS09655: LRK53_RS09655 - ribonuclease R, at 2,174,454 to 2,177,024
_RS09655
LRK53_RS09660: LRK53_RS09660 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,177,021 to 2,177,767
_RS09660
LRK53_RS09665: LRK53_RS09665 - hypothetical protein, at 2,177,764 to 2,178,033
_RS09665
LRK53_RS09670: LRK53_RS09670 - quaternary ammonium compound efflux SMR transporter SugE, at 2,178,110 to 2,178,427
_RS09670
LRK53_RS09675: LRK53_RS09675 - phosphate signaling complex protein PhoU, at 2,178,533 to 2,179,255
_RS09675
Position (kb)
2177
2178 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2176.095 kb on + strand, within LRK53_RS09655 at 2176.096 kb on - strand, within LRK53_RS09655 at 2176.096 kb on - strand, within LRK53_RS09655 at 2176.140 kb on + strand, within LRK53_RS09655 at 2176.140 kb on + strand, within LRK53_RS09655 at 2176.140 kb on + strand, within LRK53_RS09655 at 2176.141 kb on - strand, within LRK53_RS09655 at 2176.233 kb on + strand, within LRK53_RS09655 at 2176.233 kb on + strand, within LRK53_RS09655 at 2176.234 kb on - strand, within LRK53_RS09655 at 2176.234 kb on - strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.470 kb on + strand, within LRK53_RS09655 at 2176.470 kb on + strand, within LRK53_RS09655 at 2176.470 kb on + strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.474 kb on - strand, within LRK53_RS09655 at 2176.474 kb on - strand, within LRK53_RS09655 at 2176.650 kb on + strand, within LRK53_RS09655 at 2176.650 kb on + strand, within LRK53_RS09655 at 2176.650 kb on + strand, within LRK53_RS09655 at 2176.651 kb on - strand, within LRK53_RS09655 at 2176.651 kb on - strand, within LRK53_RS09655 at 2176.656 kb on + strand, within LRK53_RS09655 at 2176.656 kb on + strand, within LRK53_RS09655 at 2176.657 kb on - strand, within LRK53_RS09655 at 2176.657 kb on - strand, within LRK53_RS09655 at 2176.657 kb on - strand, within LRK53_RS09655 at 2176.657 kb on - strand, within LRK53_RS09655 at 2177.243 kb on + strand, within LRK53_RS09660 at 2177.243 kb on + strand, within LRK53_RS09660 at 2177.573 kb on + strand, within LRK53_RS09660 at 2177.779 kb on + strand at 2177.779 kb on + strand at 2177.780 kb on - strand at 2177.780 kb on - strand at 2177.780 kb on - strand at 2177.780 kb on - strand at 2177.794 kb on + strand, within LRK53_RS09665 at 2177.795 kb on - strand, within LRK53_RS09665 at 2177.795 kb on - strand, within LRK53_RS09665 at 2177.869 kb on + strand, within LRK53_RS09665 at 2177.869 kb on + strand, within LRK53_RS09665 at 2177.869 kb on + strand, within LRK53_RS09665 at 2177.869 kb on + strand, within LRK53_RS09665 at 2177.870 kb on - strand, within LRK53_RS09665 at 2177.870 kb on - strand, within LRK53_RS09665 at 2177.980 kb on + strand, within LRK53_RS09665 at 2177.980 kb on + strand, within LRK53_RS09665 at 2177.981 kb on - strand, within LRK53_RS09665 at 2177.981 kb on - strand, within LRK53_RS09665 at 2177.981 kb on - strand, within LRK53_RS09665 at 2177.981 kb on - strand, within LRK53_RS09665 at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.284 kb on + strand, within LRK53_RS09670 at 2178.284 kb on + strand, within LRK53_RS09670 at 2178.284 kb on + strand, within LRK53_RS09670 at 2178.285 kb on - strand, within LRK53_RS09670 at 2178.285 kb on - strand, within LRK53_RS09670 at 2178.415 kb on + strand at 2178.415 kb on + strand at 2178.416 kb on - strand at 2178.439 kb on + strand at 2178.440 kb on - strand at 2178.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM remove 2,176,095 + LRK53_RS09655 0.64 -0.1 2,176,096 - LRK53_RS09655 0.64 +0.9 2,176,096 - LRK53_RS09655 0.64 -1.1 2,176,140 + LRK53_RS09655 0.66 -0.1 2,176,140 + LRK53_RS09655 0.66 +0.3 2,176,140 + LRK53_RS09655 0.66 -0.1 2,176,141 - LRK53_RS09655 0.66 -1.4 2,176,233 + LRK53_RS09655 0.69 -0.7 2,176,233 + LRK53_RS09655 0.69 +0.9 2,176,234 - LRK53_RS09655 0.69 -0.7 2,176,234 - LRK53_RS09655 0.69 -2.3 2,176,239 + LRK53_RS09655 0.69 +0.9 2,176,239 + LRK53_RS09655 0.69 -1.1 2,176,239 + LRK53_RS09655 0.69 -0.1 2,176,239 + LRK53_RS09655 0.69 +1.9 2,176,239 + LRK53_RS09655 0.69 +0.9 2,176,239 + LRK53_RS09655 0.69 +1.5 2,176,239 + LRK53_RS09655 0.69 -0.5 2,176,239 + LRK53_RS09655 0.69 -1.4 2,176,239 + LRK53_RS09655 0.69 -2.3 2,176,239 + LRK53_RS09655 0.69 +0.9 2,176,239 + LRK53_RS09655 0.69 +0.3 2,176,239 + LRK53_RS09655 0.69 -2.3 2,176,239 + LRK53_RS09655 0.69 -1.9 2,176,239 + LRK53_RS09655 0.69 -2.1 2,176,239 + LRK53_RS09655 0.69 -0.1 2,176,239 + LRK53_RS09655 0.69 -0.1 2,176,239 + LRK53_RS09655 0.69 +2.9 2,176,239 + LRK53_RS09655 0.69 +0.9 2,176,239 + LRK53_RS09655 0.69 -0.1 2,176,239 + LRK53_RS09655 0.69 +0.9 2,176,239 + LRK53_RS09655 0.69 +0.9 2,176,239 + LRK53_RS09655 0.69 -1.4 2,176,240 - LRK53_RS09655 0.69 -1.9 2,176,240 - LRK53_RS09655 0.69 -0.7 2,176,240 - LRK53_RS09655 0.69 -1.9 2,176,240 - LRK53_RS09655 0.69 +0.9 2,176,240 - LRK53_RS09655 0.69 -1.4 2,176,240 - LRK53_RS09655 0.69 -0.4 2,176,240 - LRK53_RS09655 0.69 -3.0 2,176,240 - LRK53_RS09655 0.69 -1.7 2,176,240 - LRK53_RS09655 0.69 -0.1 2,176,240 - LRK53_RS09655 0.69 -0.7 2,176,240 - LRK53_RS09655 0.69 -1.4 2,176,240 - LRK53_RS09655 0.69 -0.7 2,176,240 - LRK53_RS09655 0.69 +0.9 2,176,240 - LRK53_RS09655 0.69 -1.4 2,176,240 - LRK53_RS09655 0.69 +0.9 2,176,240 - LRK53_RS09655 0.69 -0.1 2,176,241 + LRK53_RS09655 0.70 +0.9 2,176,241 + LRK53_RS09655 0.70 -2.1 2,176,241 + LRK53_RS09655 0.70 -2.3 2,176,241 + LRK53_RS09655 0.70 +0.9 2,176,241 + LRK53_RS09655 0.70 -0.1 2,176,241 + LRK53_RS09655 0.70 -0.7 2,176,241 + LRK53_RS09655 0.70 -0.1 2,176,241 + LRK53_RS09655 0.70 +0.9 2,176,241 + LRK53_RS09655 0.70 -0.7 2,176,241 + LRK53_RS09655 0.70 -0.7 2,176,241 + LRK53_RS09655 0.70 -0.7 2,176,241 + LRK53_RS09655 0.70 +0.6 2,176,241 + LRK53_RS09655 0.70 -2.3 2,176,241 + LRK53_RS09655 0.70 +0.9 2,176,241 + LRK53_RS09655 0.70 -0.1 2,176,241 + LRK53_RS09655 0.70 -1.1 2,176,241 + LRK53_RS09655 0.70 +0.9 2,176,241 + LRK53_RS09655 0.70 +0.9 2,176,241 + LRK53_RS09655 0.70 -1.0 2,176,241 + LRK53_RS09655 0.70 -0.4 2,176,241 + LRK53_RS09655 0.70 -0.7 2,176,241 + LRK53_RS09655 0.70 -0.1 2,176,241 + LRK53_RS09655 0.70 +0.3 2,176,241 + LRK53_RS09655 0.70 +0.9 2,176,241 + LRK53_RS09655 0.70 +0.9 2,176,241 + LRK53_RS09655 0.70 -0.1 2,176,241 + LRK53_RS09655 0.70 -0.7 2,176,241 + LRK53_RS09655 0.70 -0.4 2,176,242 - LRK53_RS09655 0.70 -0.7 2,176,242 - LRK53_RS09655 0.70 -1.9 2,176,242 - LRK53_RS09655 0.70 -0.7 2,176,242 - LRK53_RS09655 0.70 -1.4 2,176,242 - LRK53_RS09655 0.70 -0.7 2,176,242 - LRK53_RS09655 0.70 +0.9 2,176,242 - LRK53_RS09655 0.70 -0.7 2,176,242 - LRK53_RS09655 0.70 -0.7 2,176,242 - LRK53_RS09655 0.70 -0.9 2,176,242 - LRK53_RS09655 0.70 -1.4 2,176,242 - LRK53_RS09655 0.70 -0.7 2,176,242 - LRK53_RS09655 0.70 -0.1 2,176,242 - LRK53_RS09655 0.70 +0.2 2,176,242 - LRK53_RS09655 0.70 -1.7 2,176,470 + LRK53_RS09655 0.78 +0.2 2,176,470 + LRK53_RS09655 0.78 -1.7 2,176,470 + LRK53_RS09655 0.78 -1.3 2,176,471 - LRK53_RS09655 0.78 +0.9 2,176,471 - LRK53_RS09655 0.78 -0.1 2,176,471 - LRK53_RS09655 0.78 -1.9 2,176,471 - LRK53_RS09655 0.78 -0.7 2,176,471 - LRK53_RS09655 0.78 -0.7 2,176,471 - LRK53_RS09655 0.78 +0.4 2,176,471 - LRK53_RS09655 0.78 -1.0 2,176,473 + LRK53_RS09655 0.79 -1.4 2,176,473 + LRK53_RS09655 0.79 -1.3 2,176,473 + LRK53_RS09655 0.79 -0.8 2,176,473 + LRK53_RS09655 0.79 +0.0 2,176,473 + LRK53_RS09655 0.79 +0.6 2,176,473 + LRK53_RS09655 0.79 -2.4 2,176,473 + LRK53_RS09655 0.79 -0.7 2,176,474 - LRK53_RS09655 0.79 -0.7 2,176,474 - LRK53_RS09655 0.79 +0.9 2,176,650 + LRK53_RS09655 0.85 -0.7 2,176,650 + LRK53_RS09655 0.85 +1.9 2,176,650 + LRK53_RS09655 0.85 +1.1 2,176,651 - LRK53_RS09655 0.85 -0.1 2,176,651 - LRK53_RS09655 0.85 -1.2 2,176,656 + LRK53_RS09655 0.86 -0.4 2,176,656 + LRK53_RS09655 0.86 +1.3 2,176,657 - LRK53_RS09655 0.86 -0.4 2,176,657 - LRK53_RS09655 0.86 +0.2 2,176,657 - LRK53_RS09655 0.86 +0.9 2,176,657 - LRK53_RS09655 0.86 +0.1 2,177,243 + LRK53_RS09660 0.30 -0.7 2,177,243 + LRK53_RS09660 0.30 -0.1 2,177,573 + LRK53_RS09660 0.74 -0.1 2,177,779 + +0.4 2,177,779 + -0.1 2,177,780 - -1.1 2,177,780 - +2.5 2,177,780 - -0.1 2,177,780 - +0.9 2,177,794 + LRK53_RS09665 0.11 -1.6 2,177,795 - LRK53_RS09665 0.11 -2.2 2,177,795 - LRK53_RS09665 0.11 +0.3 2,177,869 + LRK53_RS09665 0.39 -0.7 2,177,869 + LRK53_RS09665 0.39 -1.7 2,177,869 + LRK53_RS09665 0.39 -0.7 2,177,869 + LRK53_RS09665 0.39 -1.5 2,177,870 - LRK53_RS09665 0.39 +0.6 2,177,870 - LRK53_RS09665 0.39 -0.7 2,177,980 + LRK53_RS09665 0.80 +0.4 2,177,980 + LRK53_RS09665 0.80 -0.5 2,177,981 - LRK53_RS09665 0.80 +0.6 2,177,981 - LRK53_RS09665 0.80 -1.1 2,177,981 - LRK53_RS09665 0.80 -2.3 2,177,981 - LRK53_RS09665 0.80 -0.1 2,178,122 + -1.1 2,178,122 + -1.1 2,178,122 + -1.1 2,178,122 + -0.6 2,178,122 + -0.7 2,178,122 + -0.1 2,178,122 + -0.8 2,178,122 + -0.4 2,178,122 + -0.2 2,178,122 + +0.9 2,178,122 + -0.1 2,178,122 + -0.9 2,178,123 - -0.7 2,178,123 - -0.1 2,178,123 - -0.1 2,178,123 - -0.6 2,178,123 - +0.2 2,178,123 - +0.3 2,178,123 - +0.3 2,178,123 - +0.2 2,178,123 - +0.9 2,178,123 - -0.7 2,178,123 - -0.1 2,178,123 - -0.5 2,178,123 - +0.9 2,178,123 - -1.4 2,178,123 - -0.6 2,178,173 + LRK53_RS09670 0.20 +0.9 2,178,173 + LRK53_RS09670 0.20 -0.1 2,178,173 + LRK53_RS09670 0.20 +1.5 2,178,173 + LRK53_RS09670 0.20 -0.0 2,178,173 + LRK53_RS09670 0.20 +0.2 2,178,173 + LRK53_RS09670 0.20 -0.3 2,178,173 + LRK53_RS09670 0.20 -0.4 2,178,173 + LRK53_RS09670 0.20 -0.1 2,178,174 - LRK53_RS09670 0.20 -1.4 2,178,174 - LRK53_RS09670 0.20 -1.6 2,178,174 - LRK53_RS09670 0.20 -1.7 2,178,174 - LRK53_RS09670 0.20 -0.7 2,178,174 - LRK53_RS09670 0.20 +0.9 2,178,174 - LRK53_RS09670 0.20 -1.7 2,178,174 - LRK53_RS09670 0.20 -0.1 2,178,174 - LRK53_RS09670 0.20 +1.9 2,178,174 - LRK53_RS09670 0.20 -0.7 2,178,284 + LRK53_RS09670 0.55 +0.9 2,178,284 + LRK53_RS09670 0.55 -0.1 2,178,284 + LRK53_RS09670 0.55 -0.3 2,178,285 - LRK53_RS09670 0.55 -0.7 2,178,285 - LRK53_RS09670 0.55 -0.4 2,178,415 + +1.9 2,178,415 + -1.4 2,178,416 - -0.2 2,178,439 + -1.1 2,178,440 - +1.3 2,178,440 - -0.9
Or see this region's nucleotide sequence