Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06140 and LRK53_RS06145 are separated by 101 nucleotides LRK53_RS06145 and LRK53_RS06150 are separated by 749 nucleotides
LRK53_RS06140: LRK53_RS06140 - acyl-CoA dehydrogenase family protein, at 1,409,465 to 1,411,105
_RS06140
LRK53_RS06145: LRK53_RS06145 - thioesterase family protein, at 1,411,207 to 1,411,992
_RS06145
LRK53_RS06150: LRK53_RS06150 - PEP-CTERM sorting domain-containing protein, at 1,412,742 to 1,413,581
_RS06150
Position (kb) 1411
1412 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1410.417 kb on + strand, within LRK53_RS06140 at 1410.417 kb on + strand, within LRK53_RS06140 at 1410.417 kb on + strand, within LRK53_RS06140 at 1410.417 kb on + strand, within LRK53_RS06140 at 1410.417 kb on + strand, within LRK53_RS06140 at 1410.417 kb on + strand, within LRK53_RS06140 at 1410.417 kb on + strand, within LRK53_RS06140 at 1410.417 kb on + strand, within LRK53_RS06140 at 1410.417 kb on + strand, within LRK53_RS06140 at 1410.417 kb on + strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.418 kb on - strand, within LRK53_RS06140 at 1410.519 kb on + strand, within LRK53_RS06140 at 1410.519 kb on + strand, within LRK53_RS06140 at 1410.520 kb on - strand, within LRK53_RS06140 at 1410.735 kb on + strand, within LRK53_RS06140 at 1410.735 kb on + strand, within LRK53_RS06140 at 1410.735 kb on + strand, within LRK53_RS06140 at 1410.735 kb on + strand, within LRK53_RS06140 at 1410.735 kb on + strand, within LRK53_RS06140 at 1410.735 kb on + strand, within LRK53_RS06140 at 1410.735 kb on + strand, within LRK53_RS06140 at 1410.735 kb on + strand, within LRK53_RS06140 at 1410.735 kb on + strand, within LRK53_RS06140 at 1410.735 kb on + strand, within LRK53_RS06140 at 1410.736 kb on - strand, within LRK53_RS06140 at 1410.736 kb on - strand, within LRK53_RS06140 at 1410.736 kb on - strand, within LRK53_RS06140 at 1410.736 kb on - strand, within LRK53_RS06140 at 1410.736 kb on - strand, within LRK53_RS06140 at 1410.736 kb on - strand, within LRK53_RS06140 at 1410.736 kb on - strand, within LRK53_RS06140 at 1410.736 kb on - strand, within LRK53_RS06140 at 1410.736 kb on - strand, within LRK53_RS06140 at 1410.756 kb on + strand, within LRK53_RS06140 at 1410.756 kb on + strand, within LRK53_RS06140 at 1410.756 kb on + strand, within LRK53_RS06140 at 1410.756 kb on + strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.757 kb on - strand, within LRK53_RS06140 at 1410.762 kb on + strand, within LRK53_RS06140 at 1410.762 kb on + strand, within LRK53_RS06140 at 1410.762 kb on + strand, within LRK53_RS06140 at 1410.763 kb on - strand, within LRK53_RS06140 at 1410.763 kb on - strand, within LRK53_RS06140 at 1410.763 kb on - strand, within LRK53_RS06140 at 1410.763 kb on - strand, within LRK53_RS06140 at 1410.763 kb on - strand, within LRK53_RS06140 at 1410.763 kb on - strand, within LRK53_RS06140 at 1410.878 kb on - strand, within LRK53_RS06140 at 1410.970 kb on - strand at 1410.970 kb on - strand at 1411.066 kb on - strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.137 kb on + strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.138 kb on - strand at 1411.139 kb on + strand at 1411.139 kb on + strand at 1411.140 kb on - strand at 1411.140 kb on - strand at 1411.140 kb on - strand at 1411.268 kb on + strand at 1411.268 kb on + strand at 1411.268 kb on + strand at 1411.268 kb on + strand at 1411.268 kb on + strand at 1411.268 kb on + strand at 1411.268 kb on + strand at 1411.268 kb on + strand at 1411.269 kb on - strand at 1411.269 kb on - strand at 1411.269 kb on - strand at 1411.269 kb on - strand at 1411.269 kb on - strand at 1411.269 kb on - strand at 1411.269 kb on - strand at 1411.597 kb on + strand, within LRK53_RS06145 at 1411.597 kb on + strand, within LRK53_RS06145 at 1411.598 kb on - strand, within LRK53_RS06145 at 1411.598 kb on - strand, within LRK53_RS06145 at 1411.909 kb on + strand, within LRK53_RS06145 at 1411.909 kb on + strand, within LRK53_RS06145 at 1411.910 kb on - strand, within LRK53_RS06145 at 1411.910 kb on - strand, within LRK53_RS06145 at 1411.910 kb on - strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.911 kb on + strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1411.912 kb on - strand, within LRK53_RS06145 at 1412.089 kb on + strand at 1412.089 kb on + strand at 1412.090 kb on - strand at 1412.090 kb on - strand at 1412.095 kb on + strand at 1412.095 kb on + strand at 1412.095 kb on + strand at 1412.095 kb on + strand at 1412.095 kb on + strand at 1412.096 kb on - strand at 1412.096 kb on - strand at 1412.096 kb on - strand at 1412.096 kb on - strand at 1412.096 kb on - strand at 1412.148 kb on - strand at 1412.174 kb on - strand at 1412.174 kb on - strand at 1412.174 kb on - strand at 1412.174 kb on - strand at 1412.174 kb on - strand at 1412.174 kb on - strand at 1412.174 kb on - strand at 1412.410 kb on + strand at 1412.417 kb on - strand at 1412.481 kb on + strand at 1412.541 kb on + strand at 1412.559 kb on - strand at 1412.559 kb on - strand at 1412.583 kb on + strand at 1412.583 kb on + strand at 1412.583 kb on + strand at 1412.584 kb on - strand at 1412.584 kb on - strand at 1412.584 kb on - strand at 1412.584 kb on - strand at 1412.596 kb on - strand at 1412.596 kb on - strand at 1412.636 kb on + strand at 1412.636 kb on + strand at 1412.637 kb on - strand at 1412.642 kb on + strand at 1412.723 kb on + strand at 1412.728 kb on - strand at 1412.754 kb on + strand at 1412.755 kb on + strand at 1412.755 kb on + strand at 1412.755 kb on + strand at 1412.755 kb on + strand at 1412.755 kb on + strand at 1412.755 kb on + strand at 1412.755 kb on + strand at 1412.756 kb on - strand at 1412.756 kb on - strand at 1412.756 kb on - strand at 1412.756 kb on - strand at 1412.876 kb on + strand, within LRK53_RS06150 at 1412.876 kb on + strand, within LRK53_RS06150 at 1412.876 kb on + strand, within LRK53_RS06150 at 1412.876 kb on + strand, within LRK53_RS06150 at 1412.876 kb on + strand, within LRK53_RS06150 at 1412.877 kb on - strand, within LRK53_RS06150 at 1412.905 kb on - strand, within LRK53_RS06150
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM remove 1,410,417 + LRK53_RS06140 0.58 -0.6 1,410,417 + LRK53_RS06140 0.58 +1.0 1,410,417 + LRK53_RS06140 0.58 -0.6 1,410,417 + LRK53_RS06140 0.58 +0.5 1,410,417 + LRK53_RS06140 0.58 +2.0 1,410,417 + LRK53_RS06140 0.58 +1.0 1,410,417 + LRK53_RS06140 0.58 -0.4 1,410,417 + LRK53_RS06140 0.58 +1.0 1,410,417 + LRK53_RS06140 0.58 +2.0 1,410,417 + LRK53_RS06140 0.58 -0.6 1,410,418 - LRK53_RS06140 0.58 +0.1 1,410,418 - LRK53_RS06140 0.58 +1.0 1,410,418 - LRK53_RS06140 0.58 +1.0 1,410,418 - LRK53_RS06140 0.58 -1.4 1,410,418 - LRK53_RS06140 0.58 +0.2 1,410,418 - LRK53_RS06140 0.58 -0.0 1,410,418 - LRK53_RS06140 0.58 +0.2 1,410,418 - LRK53_RS06140 0.58 -0.3 1,410,418 - LRK53_RS06140 0.58 +1.0 1,410,418 - LRK53_RS06140 0.58 +0.5 1,410,418 - LRK53_RS06140 0.58 +0.5 1,410,418 - LRK53_RS06140 0.58 -2.4 1,410,418 - LRK53_RS06140 0.58 -1.0 1,410,418 - LRK53_RS06140 0.58 -0.0 1,410,519 + LRK53_RS06140 0.64 -0.1 1,410,519 + LRK53_RS06140 0.64 +0.1 1,410,520 - LRK53_RS06140 0.64 -1.0 1,410,735 + LRK53_RS06140 0.77 +0.5 1,410,735 + LRK53_RS06140 0.77 -1.0 1,410,735 + LRK53_RS06140 0.77 -1.0 1,410,735 + LRK53_RS06140 0.77 +1.0 1,410,735 + LRK53_RS06140 0.77 +0.5 1,410,735 + LRK53_RS06140 0.77 +1.0 1,410,735 + LRK53_RS06140 0.77 -1.0 1,410,735 + LRK53_RS06140 0.77 -1.3 1,410,735 + LRK53_RS06140 0.77 -0.2 1,410,735 + LRK53_RS06140 0.77 -1.2 1,410,736 - LRK53_RS06140 0.77 -0.9 1,410,736 - LRK53_RS06140 0.77 -3.4 1,410,736 - LRK53_RS06140 0.77 -0.9 1,410,736 - LRK53_RS06140 0.77 -0.6 1,410,736 - LRK53_RS06140 0.77 -0.4 1,410,736 - LRK53_RS06140 0.77 +1.0 1,410,736 - LRK53_RS06140 0.77 -1.4 1,410,736 - LRK53_RS06140 0.77 -0.3 1,410,736 - LRK53_RS06140 0.77 -0.6 1,410,756 + LRK53_RS06140 0.79 +0.4 1,410,756 + LRK53_RS06140 0.79 -0.9 1,410,756 + LRK53_RS06140 0.79 +0.4 1,410,756 + LRK53_RS06140 0.79 +0.2 1,410,757 - LRK53_RS06140 0.79 -2.5 1,410,757 - LRK53_RS06140 0.79 +0.2 1,410,757 - LRK53_RS06140 0.79 +1.2 1,410,757 - LRK53_RS06140 0.79 +0.3 1,410,757 - LRK53_RS06140 0.79 +1.4 1,410,757 - LRK53_RS06140 0.79 -1.9 1,410,757 - LRK53_RS06140 0.79 -0.4 1,410,757 - LRK53_RS06140 0.79 -1.4 1,410,757 - LRK53_RS06140 0.79 +1.0 1,410,757 - LRK53_RS06140 0.79 +0.5 1,410,757 - LRK53_RS06140 0.79 +0.1 1,410,757 - LRK53_RS06140 0.79 -1.0 1,410,757 - LRK53_RS06140 0.79 -0.0 1,410,757 - LRK53_RS06140 0.79 -0.3 1,410,762 + LRK53_RS06140 0.79 -0.9 1,410,762 + LRK53_RS06140 0.79 -1.0 1,410,762 + LRK53_RS06140 0.79 +0.1 1,410,763 - LRK53_RS06140 0.79 -1.0 1,410,763 - LRK53_RS06140 0.79 +0.5 1,410,763 - LRK53_RS06140 0.79 +1.0 1,410,763 - LRK53_RS06140 0.79 -0.0 1,410,763 - LRK53_RS06140 0.79 -0.4 1,410,763 - LRK53_RS06140 0.79 -0.0 1,410,878 - LRK53_RS06140 0.86 -1.4 1,410,970 - -1.4 1,410,970 - -0.0 1,411,066 - +2.5 1,411,137 + -0.6 1,411,137 + -0.6 1,411,137 + +1.4 1,411,137 + -1.0 1,411,137 + +1.0 1,411,137 + -0.9 1,411,137 + -0.3 1,411,137 + +1.0 1,411,137 + -0.6 1,411,137 + -0.2 1,411,137 + -0.0 1,411,137 + -0.0 1,411,137 + -1.5 1,411,138 - -0.9 1,411,138 - -1.0 1,411,138 - -0.3 1,411,138 - -1.0 1,411,138 - -0.8 1,411,138 - -1.2 1,411,138 - -0.1 1,411,138 - +1.0 1,411,138 - +1.0 1,411,138 - -0.0 1,411,138 - +1.0 1,411,138 - -0.6 1,411,138 - -0.0 1,411,138 - -1.6 1,411,139 + +1.0 1,411,139 + -1.4 1,411,140 - +1.5 1,411,140 - +0.2 1,411,140 - -0.5 1,411,268 + +0.4 1,411,268 + +0.2 1,411,268 + -0.7 1,411,268 + +0.3 1,411,268 + -2.0 1,411,268 + -1.4 1,411,268 + +1.0 1,411,268 + +0.5 1,411,269 - -1.3 1,411,269 - -1.0 1,411,269 - -2.0 1,411,269 - -0.2 1,411,269 - +1.0 1,411,269 - -0.6 1,411,269 - +1.0 1,411,597 + LRK53_RS06145 0.50 -0.5 1,411,597 + LRK53_RS06145 0.50 -1.0 1,411,598 - LRK53_RS06145 0.50 -0.2 1,411,598 - LRK53_RS06145 0.50 +0.2 1,411,909 + LRK53_RS06145 0.89 +0.4 1,411,909 + LRK53_RS06145 0.89 +0.4 1,411,910 - LRK53_RS06145 0.89 +0.5 1,411,910 - LRK53_RS06145 0.89 -0.6 1,411,910 - LRK53_RS06145 0.89 -0.0 1,411,911 + LRK53_RS06145 0.90 -0.6 1,411,911 + LRK53_RS06145 0.90 -0.0 1,411,911 + LRK53_RS06145 0.90 -0.0 1,411,911 + LRK53_RS06145 0.90 +1.4 1,411,911 + LRK53_RS06145 0.90 -0.0 1,411,911 + LRK53_RS06145 0.90 +1.5 1,411,911 + LRK53_RS06145 0.90 +0.4 1,411,911 + LRK53_RS06145 0.90 -0.3 1,411,911 + LRK53_RS06145 0.90 -0.6 1,411,911 + LRK53_RS06145 0.90 +0.3 1,411,911 + LRK53_RS06145 0.90 +1.0 1,411,911 + LRK53_RS06145 0.90 +1.7 1,411,911 + LRK53_RS06145 0.90 -0.5 1,411,911 + LRK53_RS06145 0.90 -0.2 1,411,911 + LRK53_RS06145 0.90 -0.6 1,411,911 + LRK53_RS06145 0.90 -1.9 1,411,911 + LRK53_RS06145 0.90 +1.0 1,411,912 - LRK53_RS06145 0.90 -0.2 1,411,912 - LRK53_RS06145 0.90 -0.4 1,411,912 - LRK53_RS06145 0.90 -1.0 1,411,912 - LRK53_RS06145 0.90 -0.3 1,411,912 - LRK53_RS06145 0.90 -0.0 1,411,912 - LRK53_RS06145 0.90 -0.5 1,411,912 - LRK53_RS06145 0.90 +1.4 1,411,912 - LRK53_RS06145 0.90 -0.5 1,411,912 - LRK53_RS06145 0.90 -1.0 1,411,912 - LRK53_RS06145 0.90 -1.0 1,411,912 - LRK53_RS06145 0.90 -0.7 1,411,912 - LRK53_RS06145 0.90 +0.5 1,411,912 - LRK53_RS06145 0.90 +1.0 1,411,912 - LRK53_RS06145 0.90 +0.4 1,411,912 - LRK53_RS06145 0.90 -0.5 1,412,089 + -1.0 1,412,089 + -0.0 1,412,090 - +0.2 1,412,090 - -0.2 1,412,095 + -0.3 1,412,095 + +0.2 1,412,095 + -1.3 1,412,095 + +1.0 1,412,095 + -1.4 1,412,096 - -0.9 1,412,096 - +1.0 1,412,096 - +0.5 1,412,096 - +0.4 1,412,096 - +1.0 1,412,148 - +1.0 1,412,174 - +0.4 1,412,174 - +1.0 1,412,174 - +1.0 1,412,174 - +0.3 1,412,174 - -0.5 1,412,174 - +0.1 1,412,174 - -0.6 1,412,410 + +0.0 1,412,417 - -0.0 1,412,481 + -1.4 1,412,541 + -0.4 1,412,559 - +0.1 1,412,559 - +0.1 1,412,583 + +0.1 1,412,583 + -0.2 1,412,583 + -0.0 1,412,584 - -0.1 1,412,584 - -0.4 1,412,584 - -0.5 1,412,584 - +0.4 1,412,596 - -0.6 1,412,596 - -0.0 1,412,636 + -1.7 1,412,636 + -2.0 1,412,637 - -0.6 1,412,642 + -1.0 1,412,723 + -1.0 1,412,728 - -1.7 1,412,754 + -0.0 1,412,755 + +0.5 1,412,755 + +2.3 1,412,755 + +3.0 1,412,755 + +2.0 1,412,755 + -1.6 1,412,755 + -1.9 1,412,755 + -0.6 1,412,756 - -1.9 1,412,756 - +2.3 1,412,756 - -0.3 1,412,756 - +0.4 1,412,876 + LRK53_RS06150 0.16 -0.0 1,412,876 + LRK53_RS06150 0.16 -2.2 1,412,876 + LRK53_RS06150 0.16 +1.0 1,412,876 + LRK53_RS06150 0.16 -0.6 1,412,876 + LRK53_RS06150 0.16 -0.0 1,412,877 - LRK53_RS06150 0.16 -0.9 1,412,905 - LRK53_RS06150 0.19 +0.0
Or see this region's nucleotide sequence