Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03720

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03710 and LRK53_RS03715 are separated by 112 nucleotidesLRK53_RS03715 and LRK53_RS03720 overlap by 4 nucleotidesLRK53_RS03720 and LRK53_RS03725 are separated by 139 nucleotidesLRK53_RS03725 and LRK53_RS03730 overlap by 4 nucleotides LRK53_RS03710: LRK53_RS03710 - DEAD/DEAH box helicase, at 875,304 to 877,055 _RS03710 LRK53_RS03715: LRK53_RS03715 - cell division ATP-binding protein FtsE, at 877,168 to 877,845 _RS03715 LRK53_RS03720: LRK53_RS03720 - permease-like cell division protein FtsX, at 877,842 to 878,822 _RS03720 LRK53_RS03725: LRK53_RS03725 - response regulator, at 878,962 to 879,804 _RS03725 LRK53_RS03730: LRK53_RS03730 - uracil-DNA glycosylase, at 879,801 to 880,523 _RS03730 Position (kb) 877 878 879Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 877.124 kb on + strandat 877.124 kb on + strandat 877.124 kb on + strandat 877.124 kb on + strandat 877.124 kb on + strandat 877.125 kb on - strandat 877.125 kb on - strandat 877.138 kb on + strandat 877.139 kb on - strandat 877.146 kb on + strandat 877.146 kb on + strandat 877.147 kb on - strandat 877.147 kb on - strandat 877.198 kb on + strandat 877.555 kb on + strand, within LRK53_RS03715at 877.555 kb on + strand, within LRK53_RS03715at 877.555 kb on + strand, within LRK53_RS03715at 878.046 kb on + strand, within LRK53_RS03720at 878.046 kb on + strand, within LRK53_RS03720at 878.046 kb on + strand, within LRK53_RS03720at 878.046 kb on + strand, within LRK53_RS03720at 878.046 kb on + strand, within LRK53_RS03720at 878.047 kb on - strand, within LRK53_RS03720at 878.286 kb on + strand, within LRK53_RS03720at 878.286 kb on + strand, within LRK53_RS03720at 878.287 kb on - strand, within LRK53_RS03720at 878.287 kb on - strand, within LRK53_RS03720at 878.583 kb on + strand, within LRK53_RS03720at 878.583 kb on + strand, within LRK53_RS03720at 878.583 kb on + strand, within LRK53_RS03720at 878.583 kb on + strand, within LRK53_RS03720at 878.583 kb on + strand, within LRK53_RS03720at 878.583 kb on + strand, within LRK53_RS03720at 878.584 kb on - strand, within LRK53_RS03720at 878.584 kb on - strand, within LRK53_RS03720at 878.584 kb on - strand, within LRK53_RS03720at 878.589 kb on + strand, within LRK53_RS03720at 878.589 kb on + strand, within LRK53_RS03720at 878.589 kb on + strand, within LRK53_RS03720at 878.589 kb on + strand, within LRK53_RS03720at 878.589 kb on + strand, within LRK53_RS03720at 878.590 kb on - strand, within LRK53_RS03720at 878.590 kb on - strand, within LRK53_RS03720at 878.605 kb on - strand, within LRK53_RS03720at 878.635 kb on + strand, within LRK53_RS03720at 878.635 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.694 kb on + strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.695 kb on - strand, within LRK53_RS03720at 878.879 kb on - strandat 878.879 kb on - strandat 878.879 kb on - strandat 878.879 kb on - strandat 878.888 kb on + strandat 878.888 kb on + strandat 878.888 kb on + strandat 878.889 kb on - strandat 878.956 kb on + strandat 878.956 kb on + strandat 878.956 kb on + strandat 878.956 kb on + strandat 878.957 kb on - strandat 878.957 kb on - strandat 878.957 kb on - strandat 878.967 kb on + strandat 878.967 kb on + strandat 878.967 kb on + strandat 878.967 kb on + strandat 878.967 kb on + strandat 878.967 kb on + strandat 878.968 kb on - strandat 878.968 kb on - strandat 878.968 kb on - strandat 878.968 kb on - strandat 878.973 kb on + strandat 878.973 kb on + strandat 878.973 kb on + strandat 878.973 kb on + strandat 878.973 kb on + strandat 878.973 kb on + strandat 878.973 kb on + strandat 878.973 kb on + strandat 878.973 kb on + strandat 878.973 kb on + strandat 878.974 kb on - strandat 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.226 kb on + strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.227 kb on - strand, within LRK53_RS03725at 879.304 kb on + strand, within LRK53_RS03725at 879.304 kb on + strand, within LRK53_RS03725at 879.304 kb on + strand, within LRK53_RS03725at 879.305 kb on - strand, within LRK53_RS03725at 879.305 kb on - strand, within LRK53_RS03725at 879.305 kb on - strand, within LRK53_RS03725at 879.355 kb on + strand, within LRK53_RS03725at 879.355 kb on + strand, within LRK53_RS03725at 879.356 kb on - strand, within LRK53_RS03725at 879.394 kb on + strand, within LRK53_RS03725at 879.394 kb on + strand, within LRK53_RS03725at 879.394 kb on + strand, within LRK53_RS03725at 879.394 kb on + strand, within LRK53_RS03725at 879.394 kb on + strand, within LRK53_RS03725at 879.394 kb on + strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.395 kb on - strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.470 kb on + strand, within LRK53_RS03725at 879.471 kb on - strand, within LRK53_RS03725at 879.471 kb on - strand, within LRK53_RS03725at 879.471 kb on - strand, within LRK53_RS03725at 879.471 kb on - strand, within LRK53_RS03725at 879.471 kb on - strand, within LRK53_RS03725at 879.471 kb on - strand, within LRK53_RS03725at 879.471 kb on - strand, within LRK53_RS03725

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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877,124 + -1.4
877,124 + -1.8
877,124 + +0.4
877,124 + -1.8
877,124 + -1.7
877,125 - -0.4
877,125 - -1.0
877,138 + -0.5
877,139 - -1.2
877,146 + -0.3
877,146 + -0.6
877,147 - +1.0
877,147 - -0.6
877,198 + -1.0
877,555 + LRK53_RS03715 0.57 -2.0
877,555 + LRK53_RS03715 0.57 -0.6
877,555 + LRK53_RS03715 0.57 -0.0
878,046 + LRK53_RS03720 0.21 +1.6
878,046 + LRK53_RS03720 0.21 +1.0
878,046 + LRK53_RS03720 0.21 -0.0
878,046 + LRK53_RS03720 0.21 -0.6
878,046 + LRK53_RS03720 0.21 -0.0
878,047 - LRK53_RS03720 0.21 +0.4
878,286 + LRK53_RS03720 0.45 +1.0
878,286 + LRK53_RS03720 0.45 -0.6
878,287 - LRK53_RS03720 0.45 -0.6
878,287 - LRK53_RS03720 0.45 +1.0
878,583 + LRK53_RS03720 0.76 -0.0
878,583 + LRK53_RS03720 0.76 +1.0
878,583 + LRK53_RS03720 0.76 -0.0
878,583 + LRK53_RS03720 0.76 -1.4
878,583 + LRK53_RS03720 0.76 -1.0
878,583 + LRK53_RS03720 0.76 -0.0
878,584 - LRK53_RS03720 0.76 -3.1
878,584 - LRK53_RS03720 0.76 -0.6
878,584 - LRK53_RS03720 0.76 -0.0
878,589 + LRK53_RS03720 0.76 -0.0
878,589 + LRK53_RS03720 0.76 -0.6
878,589 + LRK53_RS03720 0.76 -1.4
878,589 + LRK53_RS03720 0.76 +1.0
878,589 + LRK53_RS03720 0.76 -1.0
878,590 - LRK53_RS03720 0.76 +1.0
878,590 - LRK53_RS03720 0.76 +0.4
878,605 - LRK53_RS03720 0.78 -1.4
878,635 + LRK53_RS03720 0.81 +1.0
878,635 + LRK53_RS03720 0.81 -1.0
878,694 + LRK53_RS03720 0.87 +1.0
878,694 + LRK53_RS03720 0.87 -1.4
878,694 + LRK53_RS03720 0.87 -0.6
878,694 + LRK53_RS03720 0.87 -0.0
878,694 + LRK53_RS03720 0.87 +1.0
878,694 + LRK53_RS03720 0.87 -1.0
878,694 + LRK53_RS03720 0.87 -0.0
878,694 + LRK53_RS03720 0.87 -1.4
878,694 + LRK53_RS03720 0.87 -0.8
878,694 + LRK53_RS03720 0.87 -0.0
878,694 + LRK53_RS03720 0.87 -0.6
878,694 + LRK53_RS03720 0.87 -0.6
878,694 + LRK53_RS03720 0.87 -0.0
878,694 + LRK53_RS03720 0.87 -0.6
878,694 + LRK53_RS03720 0.87 -0.6
878,694 + LRK53_RS03720 0.87 -1.4
878,694 + LRK53_RS03720 0.87 -1.0
878,694 + LRK53_RS03720 0.87 +1.0
878,695 - LRK53_RS03720 0.87 +1.0
878,695 - LRK53_RS03720 0.87 +2.0
878,695 - LRK53_RS03720 0.87 -1.4
878,695 - LRK53_RS03720 0.87 +1.0
878,695 - LRK53_RS03720 0.87 -1.6
878,695 - LRK53_RS03720 0.87 -2.4
878,695 - LRK53_RS03720 0.87 -0.0
878,695 - LRK53_RS03720 0.87 -2.5
878,695 - LRK53_RS03720 0.87 -0.0
878,695 - LRK53_RS03720 0.87 +2.0
878,695 - LRK53_RS03720 0.87 +1.0
878,695 - LRK53_RS03720 0.87 -0.0
878,695 - LRK53_RS03720 0.87 +1.0
878,695 - LRK53_RS03720 0.87 +1.0
878,695 - LRK53_RS03720 0.87 +2.0
878,695 - LRK53_RS03720 0.87 +1.0
878,879 - -2.0
878,879 - +0.2
878,879 - +0.7
878,879 - -0.6
878,888 + -0.3
878,888 + -1.0
878,888 + +0.2
878,889 - -0.8
878,956 + -0.3
878,956 + +0.4
878,956 + -0.0
878,956 + -1.0
878,957 - -1.8
878,957 - +1.6
878,957 - -0.0
878,967 + -0.6
878,967 + +0.4
878,967 + -2.3
878,967 + +0.1
878,967 + -0.4
878,967 + -0.0
878,968 - -0.6
878,968 - +3.0
878,968 - -0.4
878,968 - +1.0
878,973 + -1.4
878,973 + +3.0
878,973 + -0.6
878,973 + -1.6
878,973 + -0.6
878,973 + +0.2
878,973 + +1.4
878,973 + +1.0
878,973 + -0.9
878,973 + -0.6
878,974 - -0.1
879,226 + LRK53_RS03725 0.31 -2.2
879,226 + LRK53_RS03725 0.31 +0.4
879,226 + LRK53_RS03725 0.31 -0.8
879,226 + LRK53_RS03725 0.31 -1.4
879,226 + LRK53_RS03725 0.31 -0.3
879,226 + LRK53_RS03725 0.31 +0.6
879,226 + LRK53_RS03725 0.31 -0.4
879,226 + LRK53_RS03725 0.31 -1.6
879,226 + LRK53_RS03725 0.31 -1.0
879,226 + LRK53_RS03725 0.31 +1.0
879,226 + LRK53_RS03725 0.31 -0.0
879,226 + LRK53_RS03725 0.31 +1.6
879,226 + LRK53_RS03725 0.31 -0.0
879,227 - LRK53_RS03725 0.31 -1.4
879,227 - LRK53_RS03725 0.31 -1.0
879,227 - LRK53_RS03725 0.31 -1.0
879,227 - LRK53_RS03725 0.31 -0.8
879,227 - LRK53_RS03725 0.31 -0.9
879,227 - LRK53_RS03725 0.31 +0.6
879,227 - LRK53_RS03725 0.31 +1.0
879,227 - LRK53_RS03725 0.31 +0.1
879,227 - LRK53_RS03725 0.31 -0.9
879,227 - LRK53_RS03725 0.31 -0.0
879,227 - LRK53_RS03725 0.31 +1.0
879,227 - LRK53_RS03725 0.31 -1.4
879,227 - LRK53_RS03725 0.31 -0.0
879,227 - LRK53_RS03725 0.31 -1.0
879,227 - LRK53_RS03725 0.31 -0.0
879,227 - LRK53_RS03725 0.31 -0.0
879,227 - LRK53_RS03725 0.31 +1.6
879,227 - LRK53_RS03725 0.31 -1.2
879,227 - LRK53_RS03725 0.31 -1.3
879,227 - LRK53_RS03725 0.31 -0.4
879,227 - LRK53_RS03725 0.31 +1.0
879,227 - LRK53_RS03725 0.31 +0.4
879,227 - LRK53_RS03725 0.31 -0.8
879,227 - LRK53_RS03725 0.31 +1.0
879,304 + LRK53_RS03725 0.41 +0.7
879,304 + LRK53_RS03725 0.41 -0.4
879,304 + LRK53_RS03725 0.41 -1.0
879,305 - LRK53_RS03725 0.41 +0.2
879,305 - LRK53_RS03725 0.41 -0.0
879,305 - LRK53_RS03725 0.41 -0.4
879,355 + LRK53_RS03725 0.47 -0.0
879,355 + LRK53_RS03725 0.47 +1.0
879,356 - LRK53_RS03725 0.47 -2.2
879,394 + LRK53_RS03725 0.51 +0.4
879,394 + LRK53_RS03725 0.51 -0.4
879,394 + LRK53_RS03725 0.51 +0.1
879,394 + LRK53_RS03725 0.51 -1.6
879,394 + LRK53_RS03725 0.51 -0.6
879,394 + LRK53_RS03725 0.51 +0.4
879,395 - LRK53_RS03725 0.51 +0.4
879,395 - LRK53_RS03725 0.51 +1.7
879,395 - LRK53_RS03725 0.51 +0.6
879,395 - LRK53_RS03725 0.51 +0.4
879,395 - LRK53_RS03725 0.51 -1.0
879,395 - LRK53_RS03725 0.51 -1.0
879,395 - LRK53_RS03725 0.51 -1.3
879,395 - LRK53_RS03725 0.51 -0.2
879,395 - LRK53_RS03725 0.51 -0.6
879,395 - LRK53_RS03725 0.51 -0.0
879,395 - LRK53_RS03725 0.51 +2.0
879,395 - LRK53_RS03725 0.51 -0.4
879,470 + LRK53_RS03725 0.60 +0.4
879,470 + LRK53_RS03725 0.60 -0.0
879,470 + LRK53_RS03725 0.60 -1.2
879,470 + LRK53_RS03725 0.60 -0.7
879,470 + LRK53_RS03725 0.60 +1.0
879,470 + LRK53_RS03725 0.60 -0.6
879,470 + LRK53_RS03725 0.60 -0.8
879,470 + LRK53_RS03725 0.60 -0.0
879,470 + LRK53_RS03725 0.60 -2.9
879,470 + LRK53_RS03725 0.60 -0.2
879,470 + LRK53_RS03725 0.60 -0.5
879,470 + LRK53_RS03725 0.60 -0.6
879,470 + LRK53_RS03725 0.60 -0.6
879,470 + LRK53_RS03725 0.60 -0.0
879,470 + LRK53_RS03725 0.60 -0.0
879,470 + LRK53_RS03725 0.60 -0.0
879,471 - LRK53_RS03725 0.60 -0.0
879,471 - LRK53_RS03725 0.60 +0.1
879,471 - LRK53_RS03725 0.60 -1.0
879,471 - LRK53_RS03725 0.60 +2.0
879,471 - LRK53_RS03725 0.60 -0.3
879,471 - LRK53_RS03725 0.60 -0.0
879,471 - LRK53_RS03725 0.60 -0.0

Or see this region's nucleotide sequence