Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03590

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03585 and LRK53_RS03590 are separated by 125 nucleotidesLRK53_RS03590 and LRK53_RS03595 are separated by 22 nucleotidesLRK53_RS03595 and LRK53_RS03600 are separated by 110 nucleotides LRK53_RS03585: LRK53_RS03585 - tryptophan 7-halogenase, at 847,331 to 848,641 _RS03585 LRK53_RS03590: LRK53_RS03590 - thymidine kinase, at 848,767 to 849,399 _RS03590 LRK53_RS03595: LRK53_RS03595 - hypothetical protein, at 849,422 to 850,189 _RS03595 LRK53_RS03600: LRK53_RS03600 - nitroreductase family protein, at 850,300 to 850,899 _RS03600 Position (kb) 848 849 850Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 847.814 kb on + strand, within LRK53_RS03585at 847.815 kb on - strand, within LRK53_RS03585at 847.964 kb on + strand, within LRK53_RS03585at 847.964 kb on + strand, within LRK53_RS03585at 847.964 kb on + strand, within LRK53_RS03585at 847.964 kb on + strand, within LRK53_RS03585at 847.965 kb on - strand, within LRK53_RS03585at 847.965 kb on - strand, within LRK53_RS03585at 848.045 kb on + strand, within LRK53_RS03585at 848.089 kb on + strand, within LRK53_RS03585at 848.089 kb on + strand, within LRK53_RS03585at 848.089 kb on + strand, within LRK53_RS03585at 848.089 kb on + strand, within LRK53_RS03585at 848.089 kb on + strand, within LRK53_RS03585at 848.089 kb on + strand, within LRK53_RS03585at 848.090 kb on - strand, within LRK53_RS03585at 848.090 kb on - strand, within LRK53_RS03585at 848.090 kb on - strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.171 kb on + strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.172 kb on - strand, within LRK53_RS03585at 848.177 kb on + strand, within LRK53_RS03585at 848.264 kb on + strand, within LRK53_RS03585at 848.264 kb on + strand, within LRK53_RS03585at 848.264 kb on + strand, within LRK53_RS03585at 848.265 kb on - strand, within LRK53_RS03585at 848.265 kb on - strand, within LRK53_RS03585at 848.265 kb on - strand, within LRK53_RS03585at 848.265 kb on - strand, within LRK53_RS03585at 848.265 kb on - strand, within LRK53_RS03585at 848.549 kb on + strandat 848.549 kb on + strandat 848.550 kb on - strandat 848.550 kb on - strandat 848.639 kb on + strandat 848.639 kb on + strandat 848.640 kb on - strandat 848.640 kb on - strandat 848.646 kb on + strandat 848.654 kb on - strandat 848.654 kb on - strandat 848.738 kb on + strandat 848.739 kb on - strandat 848.739 kb on - strandat 848.739 kb on - strandat 848.745 kb on + strandat 848.752 kb on + strandat 848.753 kb on - strandat 848.753 kb on - strandat 848.779 kb on + strandat 848.779 kb on + strandat 848.779 kb on + strandat 848.779 kb on + strandat 848.779 kb on + strandat 848.779 kb on + strandat 848.780 kb on - strandat 848.780 kb on - strandat 848.780 kb on - strandat 848.780 kb on - strandat 848.780 kb on - strandat 848.785 kb on + strandat 848.785 kb on + strandat 848.785 kb on + strandat 848.785 kb on + strandat 848.785 kb on + strandat 848.785 kb on + strandat 848.785 kb on + strandat 848.785 kb on + strandat 848.785 kb on + strandat 848.785 kb on + strandat 848.785 kb on + strandat 848.785 kb on + strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.786 kb on - strandat 848.789 kb on - strandat 848.789 kb on - strandat 848.836 kb on + strand, within LRK53_RS03590at 848.836 kb on + strand, within LRK53_RS03590at 848.836 kb on + strand, within LRK53_RS03590at 848.836 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.842 kb on + strand, within LRK53_RS03590at 848.843 kb on - strand, within LRK53_RS03590at 848.843 kb on - strand, within LRK53_RS03590at 849.110 kb on - strand, within LRK53_RS03590at 849.110 kb on - strand, within LRK53_RS03590at 849.301 kb on + strand, within LRK53_RS03590at 849.301 kb on + strand, within LRK53_RS03590at 849.301 kb on + strand, within LRK53_RS03590at 849.301 kb on + strand, within LRK53_RS03590at 849.301 kb on + strand, within LRK53_RS03590at 849.301 kb on + strand, within LRK53_RS03590at 849.301 kb on + strand, within LRK53_RS03590at 849.301 kb on + strand, within LRK53_RS03590at 849.301 kb on + strand, within LRK53_RS03590at 849.302 kb on - strand, within LRK53_RS03590

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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847,814 + LRK53_RS03585 0.37 -1.9
847,815 - LRK53_RS03585 0.37 -0.5
847,964 + LRK53_RS03585 0.48 -0.8
847,964 + LRK53_RS03585 0.48 -0.7
847,964 + LRK53_RS03585 0.48 +2.6
847,964 + LRK53_RS03585 0.48 +0.2
847,965 - LRK53_RS03585 0.48 -0.6
847,965 - LRK53_RS03585 0.48 -0.6
848,045 + LRK53_RS03585 0.54 +1.2
848,089 + LRK53_RS03585 0.58 -1.2
848,089 + LRK53_RS03585 0.58 -1.8
848,089 + LRK53_RS03585 0.58 +0.4
848,089 + LRK53_RS03585 0.58 +0.4
848,089 + LRK53_RS03585 0.58 +0.1
848,089 + LRK53_RS03585 0.58 -0.5
848,090 - LRK53_RS03585 0.58 +0.5
848,090 - LRK53_RS03585 0.58 -0.0
848,090 - LRK53_RS03585 0.58 -1.0
848,171 + LRK53_RS03585 0.64 -0.7
848,171 + LRK53_RS03585 0.64 +0.4
848,171 + LRK53_RS03585 0.64 -0.6
848,171 + LRK53_RS03585 0.64 -0.7
848,171 + LRK53_RS03585 0.64 -1.4
848,171 + LRK53_RS03585 0.64 +1.0
848,171 + LRK53_RS03585 0.64 -0.0
848,171 + LRK53_RS03585 0.64 -2.0
848,171 + LRK53_RS03585 0.64 -1.6
848,171 + LRK53_RS03585 0.64 -0.2
848,171 + LRK53_RS03585 0.64 +1.4
848,171 + LRK53_RS03585 0.64 -1.3
848,172 - LRK53_RS03585 0.64 -0.0
848,172 - LRK53_RS03585 0.64 -1.0
848,172 - LRK53_RS03585 0.64 -1.2
848,172 - LRK53_RS03585 0.64 +0.4
848,172 - LRK53_RS03585 0.64 -0.2
848,172 - LRK53_RS03585 0.64 -0.6
848,172 - LRK53_RS03585 0.64 +2.0
848,172 - LRK53_RS03585 0.64 +0.4
848,172 - LRK53_RS03585 0.64 -1.4
848,172 - LRK53_RS03585 0.64 -2.2
848,172 - LRK53_RS03585 0.64 -0.4
848,172 - LRK53_RS03585 0.64 +0.4
848,172 - LRK53_RS03585 0.64 +0.4
848,172 - LRK53_RS03585 0.64 -0.0
848,172 - LRK53_RS03585 0.64 -0.0
848,172 - LRK53_RS03585 0.64 -0.5
848,177 + LRK53_RS03585 0.65 -1.3
848,264 + LRK53_RS03585 0.71 +1.0
848,264 + LRK53_RS03585 0.71 -1.0
848,264 + LRK53_RS03585 0.71 -0.2
848,265 - LRK53_RS03585 0.71 +0.4
848,265 - LRK53_RS03585 0.71 +0.4
848,265 - LRK53_RS03585 0.71 -0.0
848,265 - LRK53_RS03585 0.71 +0.6
848,265 - LRK53_RS03585 0.71 -1.8
848,549 + -1.6
848,549 + +2.0
848,550 - -0.5
848,550 - -1.9
848,639 + +0.4
848,639 + -0.7
848,640 - -1.5
848,640 - -0.3
848,646 + +1.0
848,654 - +1.0
848,654 - +0.1
848,738 + -0.6
848,739 - +1.0
848,739 - -1.6
848,739 - -1.7
848,745 + -0.5
848,752 + +1.0
848,753 - -2.2
848,753 - +1.0
848,779 + -2.0
848,779 + +1.0
848,779 + +1.0
848,779 + -0.0
848,779 + -1.3
848,779 + -0.0
848,780 - +1.0
848,780 - -0.8
848,780 - +0.2
848,780 - +1.0
848,780 - -0.6
848,785 + -2.8
848,785 + -2.2
848,785 + +0.4
848,785 + -0.6
848,785 + -0.6
848,785 + -0.8
848,785 + +0.2
848,785 + +1.0
848,785 + -0.2
848,785 + +0.6
848,785 + -0.0
848,785 + -0.6
848,786 - -1.0
848,786 - -0.8
848,786 - -0.6
848,786 - -0.0
848,786 - +1.0
848,786 - +0.7
848,786 - +2.6
848,786 - +1.0
848,786 - -0.0
848,786 - +2.3
848,786 - +0.4
848,786 - -0.0
848,786 - -1.8
848,786 - -0.0
848,786 - +0.2
848,789 - -0.8
848,789 - -2.9
848,836 + LRK53_RS03590 0.11 -2.7
848,836 + LRK53_RS03590 0.11 +0.4
848,836 + LRK53_RS03590 0.11 +0.8
848,836 + LRK53_RS03590 0.11 -0.0
848,842 + LRK53_RS03590 0.12 -0.0
848,842 + LRK53_RS03590 0.12 -0.3
848,842 + LRK53_RS03590 0.12 -0.0
848,842 + LRK53_RS03590 0.12 +0.2
848,842 + LRK53_RS03590 0.12 +2.6
848,842 + LRK53_RS03590 0.12 +1.0
848,842 + LRK53_RS03590 0.12 +1.0
848,842 + LRK53_RS03590 0.12 -0.5
848,842 + LRK53_RS03590 0.12 +0.1
848,842 + LRK53_RS03590 0.12 -0.0
848,842 + LRK53_RS03590 0.12 +2.6
848,842 + LRK53_RS03590 0.12 +1.0
848,842 + LRK53_RS03590 0.12 +0.8
848,843 - LRK53_RS03590 0.12 -0.6
848,843 - LRK53_RS03590 0.12 +1.4
849,110 - LRK53_RS03590 0.54 -0.9
849,110 - LRK53_RS03590 0.54 +1.6
849,301 + LRK53_RS03590 0.84 -0.5
849,301 + LRK53_RS03590 0.84 -1.0
849,301 + LRK53_RS03590 0.84 -0.0
849,301 + LRK53_RS03590 0.84 -0.6
849,301 + LRK53_RS03590 0.84 -1.3
849,301 + LRK53_RS03590 0.84 -0.3
849,301 + LRK53_RS03590 0.84 -1.0
849,301 + LRK53_RS03590 0.84 -0.6
849,301 + LRK53_RS03590 0.84 +1.3
849,302 - LRK53_RS03590 0.85 -0.6

Or see this region's nucleotide sequence