Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03570 and LRK53_RS03575 are separated by 128 nucleotides LRK53_RS03575 and LRK53_RS03580 are separated by 132 nucleotides
LRK53_RS03570: LRK53_RS03570 - acid phosphatase, at 843,053 to 843,952
_RS03570
LRK53_RS03575: LRK53_RS03575 - AI-2E family transporter, at 844,081 to 845,112
_RS03575
LRK53_RS03580: LRK53_RS03580 - UvrD-helicase domain-containing protein, at 845,245 to 847,227
_RS03580
Position (kb) 844
845
846 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.147 kb on + strand, within LRK53_RS03570 at 843.148 kb on - strand, within LRK53_RS03570 at 843.148 kb on - strand, within LRK53_RS03570 at 843.148 kb on - strand, within LRK53_RS03570 at 843.148 kb on - strand, within LRK53_RS03570 at 843.148 kb on - strand, within LRK53_RS03570 at 843.148 kb on - strand, within LRK53_RS03570 at 843.148 kb on - strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.193 kb on + strand, within LRK53_RS03570 at 843.194 kb on - strand, within LRK53_RS03570 at 843.194 kb on - strand, within LRK53_RS03570 at 843.194 kb on - strand, within LRK53_RS03570 at 843.194 kb on - strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.195 kb on + strand, within LRK53_RS03570 at 843.196 kb on - strand, within LRK53_RS03570 at 843.196 kb on - strand, within LRK53_RS03570 at 843.196 kb on - strand, within LRK53_RS03570 at 843.196 kb on - strand, within LRK53_RS03570 at 843.196 kb on - strand, within LRK53_RS03570 at 843.196 kb on - strand, within LRK53_RS03570 at 843.196 kb on - strand, within LRK53_RS03570 at 843.196 kb on - strand, within LRK53_RS03570 at 843.196 kb on - strand, within LRK53_RS03570 at 843.245 kb on + strand, within LRK53_RS03570 at 843.288 kb on + strand, within LRK53_RS03570 at 843.288 kb on + strand, within LRK53_RS03570 at 843.288 kb on + strand, within LRK53_RS03570 at 843.289 kb on - strand, within LRK53_RS03570 at 843.289 kb on - strand, within LRK53_RS03570 at 843.289 kb on - strand, within LRK53_RS03570 at 843.289 kb on - strand, within LRK53_RS03570 at 843.459 kb on + strand, within LRK53_RS03570 at 843.459 kb on + strand, within LRK53_RS03570 at 843.459 kb on + strand, within LRK53_RS03570 at 843.459 kb on + strand, within LRK53_RS03570 at 843.459 kb on + strand, within LRK53_RS03570 at 843.460 kb on - strand, within LRK53_RS03570 at 843.460 kb on - strand, within LRK53_RS03570 at 843.460 kb on - strand, within LRK53_RS03570 at 843.460 kb on - strand, within LRK53_RS03570 at 843.567 kb on + strand, within LRK53_RS03570 at 843.567 kb on + strand, within LRK53_RS03570 at 843.567 kb on + strand, within LRK53_RS03570 at 843.567 kb on + strand, within LRK53_RS03570 at 843.567 kb on + strand, within LRK53_RS03570 at 843.567 kb on + strand, within LRK53_RS03570 at 843.568 kb on - strand, within LRK53_RS03570 at 843.568 kb on - strand, within LRK53_RS03570 at 843.568 kb on - strand, within LRK53_RS03570 at 843.568 kb on - strand, within LRK53_RS03570 at 843.568 kb on - strand, within LRK53_RS03570 at 843.568 kb on - strand, within LRK53_RS03570 at 843.568 kb on - strand, within LRK53_RS03570 at 843.601 kb on - strand, within LRK53_RS03570 at 843.747 kb on + strand, within LRK53_RS03570 at 843.748 kb on - strand, within LRK53_RS03570 at 843.748 kb on - strand, within LRK53_RS03570 at 843.759 kb on + strand, within LRK53_RS03570 at 843.759 kb on + strand, within LRK53_RS03570 at 843.759 kb on + strand, within LRK53_RS03570 at 843.759 kb on + strand, within LRK53_RS03570 at 843.759 kb on + strand, within LRK53_RS03570 at 843.760 kb on - strand, within LRK53_RS03570 at 843.760 kb on - strand, within LRK53_RS03570 at 843.760 kb on - strand, within LRK53_RS03570 at 843.760 kb on - strand, within LRK53_RS03570 at 843.760 kb on - strand, within LRK53_RS03570 at 843.760 kb on - strand, within LRK53_RS03570 at 843.972 kb on - strand at 843.999 kb on + strand at 843.999 kb on + strand at 844.000 kb on - strand at 844.000 kb on - strand at 844.129 kb on + strand at 844.138 kb on + strand at 844.138 kb on + strand at 844.138 kb on + strand at 844.138 kb on + strand at 844.138 kb on + strand at 844.138 kb on + strand at 844.138 kb on + strand at 844.139 kb on - strand at 844.139 kb on - strand at 844.139 kb on - strand at 844.139 kb on - strand at 844.139 kb on - strand at 844.139 kb on - strand at 844.139 kb on - strand at 844.139 kb on - strand at 844.139 kb on - strand at 844.945 kb on + strand, within LRK53_RS03575 at 844.945 kb on + strand, within LRK53_RS03575 at 844.945 kb on + strand, within LRK53_RS03575 at 844.945 kb on + strand, within LRK53_RS03575 at 844.945 kb on + strand, within LRK53_RS03575 at 844.945 kb on + strand, within LRK53_RS03575 at 844.945 kb on + strand, within LRK53_RS03575 at 844.945 kb on + strand, within LRK53_RS03575 at 844.945 kb on + strand, within LRK53_RS03575 at 844.945 kb on + strand, within LRK53_RS03575 at 844.945 kb on + strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 844.946 kb on - strand, within LRK53_RS03575 at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.065 kb on + strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.066 kb on - strand at 845.068 kb on + strand at 845.068 kb on + strand at 845.068 kb on + strand at 845.068 kb on + strand at 845.068 kb on + strand at 845.068 kb on + strand at 845.068 kb on + strand at 845.068 kb on + strand at 845.068 kb on + strand at 845.068 kb on + strand at 845.068 kb on + strand at 845.068 kb on + strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.069 kb on - strand at 845.074 kb on + strand at 845.074 kb on + strand at 845.074 kb on + strand at 845.074 kb on + strand at 845.074 kb on + strand at 845.074 kb on + strand at 845.074 kb on + strand at 845.075 kb on - strand at 845.075 kb on - strand at 845.075 kb on - strand at 845.075 kb on - strand at 845.075 kb on - strand at 845.075 kb on - strand at 845.075 kb on - strand at 845.111 kb on - strand at 845.111 kb on - strand at 845.111 kb on - strand at 845.111 kb on - strand at 845.111 kb on - strand at 845.111 kb on - strand at 845.181 kb on + strand at 845.181 kb on + strand at 845.181 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM remove 843,147 + LRK53_RS03570 0.10 -1.4 843,147 + LRK53_RS03570 0.10 +0.7 843,147 + LRK53_RS03570 0.10 +1.0 843,147 + LRK53_RS03570 0.10 -0.6 843,147 + LRK53_RS03570 0.10 -0.0 843,147 + LRK53_RS03570 0.10 -0.3 843,147 + LRK53_RS03570 0.10 +1.0 843,147 + LRK53_RS03570 0.10 -0.7 843,147 + LRK53_RS03570 0.10 -1.3 843,147 + LRK53_RS03570 0.10 -1.0 843,147 + LRK53_RS03570 0.10 -0.6 843,147 + LRK53_RS03570 0.10 -0.1 843,147 + LRK53_RS03570 0.10 -0.6 843,148 - LRK53_RS03570 0.11 -0.3 843,148 - LRK53_RS03570 0.11 -0.6 843,148 - LRK53_RS03570 0.11 -1.0 843,148 - LRK53_RS03570 0.11 -1.2 843,148 - LRK53_RS03570 0.11 +0.4 843,148 - LRK53_RS03570 0.11 -1.9 843,148 - LRK53_RS03570 0.11 -0.3 843,193 + LRK53_RS03570 0.16 -0.7 843,193 + LRK53_RS03570 0.16 -1.1 843,193 + LRK53_RS03570 0.16 -0.8 843,193 + LRK53_RS03570 0.16 +0.6 843,193 + LRK53_RS03570 0.16 +1.5 843,193 + LRK53_RS03570 0.16 -0.6 843,193 + LRK53_RS03570 0.16 +1.4 843,193 + LRK53_RS03570 0.16 +1.0 843,193 + LRK53_RS03570 0.16 -0.7 843,193 + LRK53_RS03570 0.16 -1.3 843,193 + LRK53_RS03570 0.16 -0.0 843,193 + LRK53_RS03570 0.16 -0.6 843,194 - LRK53_RS03570 0.16 -0.6 843,194 - LRK53_RS03570 0.16 -0.9 843,194 - LRK53_RS03570 0.16 -1.2 843,194 - LRK53_RS03570 0.16 -0.2 843,195 + LRK53_RS03570 0.16 -1.6 843,195 + LRK53_RS03570 0.16 -1.3 843,195 + LRK53_RS03570 0.16 -0.6 843,195 + LRK53_RS03570 0.16 -2.0 843,195 + LRK53_RS03570 0.16 -0.0 843,195 + LRK53_RS03570 0.16 +1.0 843,195 + LRK53_RS03570 0.16 -0.5 843,195 + LRK53_RS03570 0.16 -0.0 843,195 + LRK53_RS03570 0.16 -1.3 843,195 + LRK53_RS03570 0.16 +0.4 843,195 + LRK53_RS03570 0.16 -0.2 843,195 + LRK53_RS03570 0.16 -0.1 843,195 + LRK53_RS03570 0.16 -0.6 843,195 + LRK53_RS03570 0.16 +1.0 843,195 + LRK53_RS03570 0.16 -0.0 843,195 + LRK53_RS03570 0.16 -0.3 843,195 + LRK53_RS03570 0.16 -0.6 843,195 + LRK53_RS03570 0.16 +1.0 843,195 + LRK53_RS03570 0.16 -1.3 843,195 + LRK53_RS03570 0.16 -1.0 843,195 + LRK53_RS03570 0.16 +2.0 843,195 + LRK53_RS03570 0.16 -0.8 843,196 - LRK53_RS03570 0.16 -2.2 843,196 - LRK53_RS03570 0.16 +0.1 843,196 - LRK53_RS03570 0.16 -0.8 843,196 - LRK53_RS03570 0.16 +0.1 843,196 - LRK53_RS03570 0.16 -0.8 843,196 - LRK53_RS03570 0.16 -0.6 843,196 - LRK53_RS03570 0.16 +0.3 843,196 - LRK53_RS03570 0.16 +1.4 843,196 - LRK53_RS03570 0.16 -0.0 843,245 + LRK53_RS03570 0.21 -0.0 843,288 + LRK53_RS03570 0.26 -1.3 843,288 + LRK53_RS03570 0.26 -1.4 843,288 + LRK53_RS03570 0.26 -0.2 843,289 - LRK53_RS03570 0.26 -0.9 843,289 - LRK53_RS03570 0.26 -0.0 843,289 - LRK53_RS03570 0.26 +1.0 843,289 - LRK53_RS03570 0.26 +1.0 843,459 + LRK53_RS03570 0.45 -1.3 843,459 + LRK53_RS03570 0.45 -0.0 843,459 + LRK53_RS03570 0.45 -1.0 843,459 + LRK53_RS03570 0.45 +0.7 843,459 + LRK53_RS03570 0.45 +1.0 843,460 - LRK53_RS03570 0.45 -0.4 843,460 - LRK53_RS03570 0.45 -0.7 843,460 - LRK53_RS03570 0.45 +1.0 843,460 - LRK53_RS03570 0.45 +0.8 843,567 + LRK53_RS03570 0.57 -0.5 843,567 + LRK53_RS03570 0.57 -0.4 843,567 + LRK53_RS03570 0.57 -0.0 843,567 + LRK53_RS03570 0.57 +0.4 843,567 + LRK53_RS03570 0.57 +0.5 843,567 + LRK53_RS03570 0.57 -0.0 843,568 - LRK53_RS03570 0.57 +1.0 843,568 - LRK53_RS03570 0.57 +1.0 843,568 - LRK53_RS03570 0.57 -1.0 843,568 - LRK53_RS03570 0.57 -2.3 843,568 - LRK53_RS03570 0.57 -0.9 843,568 - LRK53_RS03570 0.57 +1.0 843,568 - LRK53_RS03570 0.57 +1.0 843,601 - LRK53_RS03570 0.61 -0.3 843,747 + LRK53_RS03570 0.77 -0.9 843,748 - LRK53_RS03570 0.77 -0.0 843,748 - LRK53_RS03570 0.77 +1.0 843,759 + LRK53_RS03570 0.78 -0.8 843,759 + LRK53_RS03570 0.78 -1.0 843,759 + LRK53_RS03570 0.78 -1.0 843,759 + LRK53_RS03570 0.78 -0.0 843,759 + LRK53_RS03570 0.78 +0.4 843,760 - LRK53_RS03570 0.79 -0.6 843,760 - LRK53_RS03570 0.79 -0.9 843,760 - LRK53_RS03570 0.79 -2.6 843,760 - LRK53_RS03570 0.79 +0.6 843,760 - LRK53_RS03570 0.79 +1.0 843,760 - LRK53_RS03570 0.79 +0.2 843,972 - -0.5 843,999 + -1.7 843,999 + +1.0 844,000 - -0.6 844,000 - +1.0 844,129 + -1.6 844,138 + -1.0 844,138 + +0.1 844,138 + -0.6 844,138 + -0.3 844,138 + -1.1 844,138 + +0.7 844,138 + +2.0 844,139 - -0.2 844,139 - +0.7 844,139 - -0.4 844,139 - +1.0 844,139 - -0.2 844,139 - -0.2 844,139 - +0.3 844,139 - +0.4 844,139 - +0.1 844,945 + LRK53_RS03575 0.84 -0.6 844,945 + LRK53_RS03575 0.84 +2.0 844,945 + LRK53_RS03575 0.84 +0.2 844,945 + LRK53_RS03575 0.84 -1.0 844,945 + LRK53_RS03575 0.84 -0.1 844,945 + LRK53_RS03575 0.84 +0.6 844,945 + LRK53_RS03575 0.84 -0.3 844,945 + LRK53_RS03575 0.84 -0.2 844,945 + LRK53_RS03575 0.84 +1.0 844,945 + LRK53_RS03575 0.84 -0.1 844,945 + LRK53_RS03575 0.84 +2.0 844,946 - LRK53_RS03575 0.84 +0.4 844,946 - LRK53_RS03575 0.84 -1.1 844,946 - LRK53_RS03575 0.84 -0.1 844,946 - LRK53_RS03575 0.84 +1.0 844,946 - LRK53_RS03575 0.84 +1.6 844,946 - LRK53_RS03575 0.84 +2.0 844,946 - LRK53_RS03575 0.84 -0.0 844,946 - LRK53_RS03575 0.84 +2.0 844,946 - LRK53_RS03575 0.84 -1.6 844,946 - LRK53_RS03575 0.84 +0.4 844,946 - LRK53_RS03575 0.84 -0.2 844,946 - LRK53_RS03575 0.84 -0.2 844,946 - LRK53_RS03575 0.84 -0.2 844,946 - LRK53_RS03575 0.84 -0.0 845,065 + -1.0 845,065 + -0.6 845,065 + +1.4 845,065 + -0.8 845,065 + -1.1 845,065 + -1.3 845,065 + -0.0 845,065 + -0.2 845,065 + -1.0 845,065 + -0.0 845,065 + +1.0 845,065 + +0.1 845,065 + -0.0 845,065 + -0.3 845,065 + -0.0 845,065 + -0.2 845,065 + +0.2 845,065 + +0.4 845,065 + -0.3 845,065 + -0.2 845,065 + -0.6 845,065 + +1.0 845,065 + -0.5 845,066 - +1.0 845,066 - +1.6 845,066 - +0.5 845,066 - -0.1 845,066 - +1.0 845,066 - -0.0 845,066 - +2.0 845,066 - -0.3 845,066 - -1.3 845,066 - -1.6 845,066 - +0.1 845,066 - +1.7 845,066 - -0.6 845,066 - -1.0 845,066 - +2.3 845,066 - +0.1 845,066 - +1.1 845,066 - +0.2 845,068 + +1.0 845,068 + -0.0 845,068 + +1.0 845,068 + +3.6 845,068 + +2.0 845,068 + +2.0 845,068 + +0.7 845,068 + -1.0 845,068 + -0.3 845,068 + -0.0 845,068 + -0.0 845,068 + -0.0 845,069 - -0.3 845,069 - -0.3 845,069 - +0.6 845,069 - -0.2 845,069 - -0.0 845,069 - +0.4 845,069 - +0.8 845,069 - +2.1 845,069 - +0.3 845,069 - -1.3 845,069 - -1.2 845,069 - -0.6 845,069 - -1.3 845,069 - -0.1 845,069 - +0.7 845,069 - -0.0 845,069 - -0.1 845,069 - -0.0 845,069 - +2.0 845,069 - -0.0 845,069 - -0.0 845,069 - -0.4 845,069 - +1.0 845,069 - -0.0 845,069 - +0.2 845,069 - -0.3 845,069 - +1.0 845,074 + -0.6 845,074 + -0.6 845,074 + +1.0 845,074 + -0.3 845,074 + +2.6 845,074 + -0.0 845,074 + +1.0 845,075 - +1.1 845,075 - -0.8 845,075 - -0.5 845,075 - -1.0 845,075 - +1.6 845,075 - +1.0 845,075 - -1.0 845,111 - -0.0 845,111 - +0.4 845,111 - +0.2 845,111 - -0.3 845,111 - -1.0 845,111 - +1.0 845,181 + -0.4 845,181 + -0.0 845,181 + -0.9
Or see this region's nucleotide sequence