Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02350 and LRK53_RS02355 overlap by 1 nucleotides LRK53_RS02355 and LRK53_RS02360 are separated by 235 nucleotides LRK53_RS02360 and LRK53_RS02365 are separated by 226 nucleotides
LRK53_RS02350: LRK53_RS02350 - hypothetical protein, at 540,903 to 541,922
_RS02350
LRK53_RS02355: LRK53_RS02355 - diphosphomevalonate decarboxylase, at 541,922 to 542,914
_RS02355
LRK53_RS02360: LRK53_RS02360 - GNAT family N-acetyltransferase, at 543,150 to 543,596
_RS02360
LRK53_RS02365: LRK53_RS02365 - RimK family protein, at 543,823 to 545,310
_RS02365
Position (kb) 541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.939 kb on + strand at 540.940 kb on - strand at 540.940 kb on - strand at 541.054 kb on + strand, within LRK53_RS02350 at 541.054 kb on + strand, within LRK53_RS02350 at 541.054 kb on + strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.394 kb on - strand, within LRK53_RS02350 at 541.786 kb on + strand, within LRK53_RS02350 at 541.873 kb on + strand at 541.873 kb on + strand at 541.873 kb on + strand at 541.874 kb on - strand at 542.154 kb on + strand, within LRK53_RS02355 at 542.155 kb on - strand, within LRK53_RS02355 at 542.155 kb on - strand, within LRK53_RS02355 at 542.155 kb on - strand, within LRK53_RS02355 at 542.155 kb on - strand, within LRK53_RS02355 at 542.304 kb on + strand, within LRK53_RS02355 at 542.304 kb on + strand, within LRK53_RS02355 at 542.305 kb on - strand, within LRK53_RS02355 at 542.868 kb on + strand at 542.868 kb on + strand at 542.868 kb on + strand at 542.868 kb on + strand at 542.868 kb on + strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.120 kb on + strand at 543.120 kb on + strand at 543.120 kb on + strand at 543.120 kb on + strand at 543.121 kb on - strand at 543.121 kb on - strand at 543.121 kb on - strand at 543.121 kb on - strand at 543.670 kb on + strand at 543.670 kb on + strand at 543.670 kb on + strand at 543.670 kb on + strand at 543.671 kb on - strand at 543.671 kb on - strand at 543.805 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.874 kb on + strand at 543.874 kb on + strand at 543.875 kb on - strand at 543.875 kb on - strand at 543.907 kb on + strand at 543.907 kb on + strand at 543.907 kb on + strand at 543.907 kb on + strand at 543.907 kb on + strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM remove 540,939 + +0.0 540,940 - +0.0 540,940 - -0.8 541,054 + LRK53_RS02350 0.15 -0.3 541,054 + LRK53_RS02350 0.15 +1.0 541,054 + LRK53_RS02350 0.15 -0.3 541,055 - LRK53_RS02350 0.15 +1.0 541,055 - LRK53_RS02350 0.15 +1.0 541,055 - LRK53_RS02350 0.15 +0.4 541,055 - LRK53_RS02350 0.15 +0.6 541,055 - LRK53_RS02350 0.15 +0.0 541,055 - LRK53_RS02350 0.15 -0.2 541,055 - LRK53_RS02350 0.15 -1.0 541,394 - LRK53_RS02350 0.48 -1.3 541,786 + LRK53_RS02350 0.87 +0.0 541,873 + +1.0 541,873 + +1.0 541,873 + +1.8 541,874 - +0.3 542,154 + LRK53_RS02355 0.23 -1.3 542,155 - LRK53_RS02355 0.23 -2.4 542,155 - LRK53_RS02355 0.23 +2.0 542,155 - LRK53_RS02355 0.23 -0.8 542,155 - LRK53_RS02355 0.23 -1.1 542,304 + LRK53_RS02355 0.38 +1.0 542,304 + LRK53_RS02355 0.38 -1.6 542,305 - LRK53_RS02355 0.39 -1.5 542,868 + +0.0 542,868 + +0.3 542,868 + -2.0 542,868 + +0.1 542,868 + -1.0 542,869 - +1.0 542,869 - +0.8 542,869 - -1.9 542,869 - -0.6 542,869 - -0.5 542,869 - +1.0 542,869 - +0.0 542,869 - +1.0 542,869 - +0.0 542,869 - -1.0 543,106 + -0.2 543,106 + -0.1 543,106 + -1.9 543,106 + +2.0 543,106 + -0.8 543,106 + -0.6 543,106 + -0.9 543,106 + +0.6 543,106 + -0.1 543,106 + +0.0 543,106 + -1.6 543,106 + +0.3 543,106 + -0.2 543,106 + -0.5 543,106 + -0.8 543,106 + -1.3 543,106 + -1.8 543,106 + +0.4 543,106 + -1.2 543,106 + +0.3 543,106 + -1.3 543,106 + +0.0 543,106 + +0.0 543,106 + -1.4 543,106 + +0.4 543,106 + +0.0 543,106 + -0.1 543,106 + +0.0 543,106 + -0.7 543,106 + -0.2 543,106 + -0.6 543,106 + +0.8 543,106 + -1.0 543,106 + +0.6 543,106 + +0.0 543,106 + -1.0 543,106 + -1.8 543,106 + -2.3 543,106 + -0.0 543,106 + -1.3 543,106 + -0.5 543,106 + +1.0 543,106 + -1.7 543,106 + +0.0 543,106 + +1.0 543,106 + +1.0 543,106 + -1.6 543,106 + -0.6 543,107 - -0.2 543,107 - -0.6 543,107 - -1.0 543,107 - +0.0 543,107 - -1.0 543,107 - +0.0 543,107 - +0.0 543,107 - -1.7 543,107 - +1.3 543,107 - -1.0 543,107 - +1.0 543,107 - +0.5 543,107 - +0.2 543,107 - -1.3 543,107 - -0.3 543,107 - -1.0 543,107 - -1.6 543,107 - -0.6 543,107 - +0.0 543,107 - -1.1 543,107 - -0.6 543,107 - +0.6 543,107 - +1.0 543,107 - +1.0 543,107 - -1.0 543,107 - +1.0 543,107 - -0.6 543,107 - -1.6 543,107 - -0.6 543,107 - +1.6 543,107 - -0.7 543,107 - -0.6 543,107 - +0.6 543,107 - -1.0 543,107 - -1.3 543,107 - -0.5 543,107 - -1.3 543,107 - -0.6 543,107 - -0.3 543,107 - -0.7 543,107 - -0.3 543,107 - -0.6 543,107 - +2.6 543,107 - +0.3 543,107 - -0.5 543,107 - +0.2 543,107 - -0.2 543,120 + -0.6 543,120 + -0.9 543,120 + -1.0 543,120 + +0.8 543,121 - -0.9 543,121 - +0.0 543,121 - +0.4 543,121 - -1.6 543,670 + -1.0 543,670 + +0.4 543,670 + +1.6 543,670 + +2.0 543,671 - +1.0 543,671 - -0.1 543,805 + -0.4 543,871 + -1.8 543,871 + -0.6 543,871 + +1.0 543,871 + +1.0 543,871 + -0.6 543,871 + -2.1 543,871 + +1.0 543,871 + +0.0 543,871 + +0.0 543,871 + +0.4 543,871 + -1.3 543,871 + -1.0 543,871 + -2.6 543,871 + -1.6 543,871 + -1.6 543,871 + -1.3 543,872 - -1.0 543,872 - -1.3 543,872 - +0.6 543,872 - -1.1 543,872 - +0.3 543,872 - -1.3 543,872 - -1.3 543,872 - +0.4 543,872 - -1.0 543,874 + -2.3 543,874 + -1.0 543,875 - -1.0 543,875 - -0.6 543,907 + -0.1 543,907 + +1.0 543,907 + -0.6 543,907 + -1.3 543,907 + +0.0 543,908 - -0.6 543,908 - +0.1 543,908 - -0.6 543,908 - -0.6 543,908 - -0.6 543,908 - -1.4 543,908 - +1.0 543,908 - -0.6
Or see this region's nucleotide sequence