Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02350

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02345 and LRK53_RS02350 are separated by 28 nucleotidesLRK53_RS02350 and LRK53_RS02355 overlap by 1 nucleotides LRK53_RS02345: LRK53_RS02345 - hydroxymethylglutaryl-CoA reductase, degradative, at 538,535 to 540,874 _RS02345 LRK53_RS02350: LRK53_RS02350 - hypothetical protein, at 540,903 to 541,922 _RS02350 LRK53_RS02355: LRK53_RS02355 - diphosphomevalonate decarboxylase, at 541,922 to 542,914 _RS02355 Position (kb) 540 541 542Strain fitness (log2 ratio) -2 -1 0 1 2at 540.241 kb on + strand, within LRK53_RS02345at 540.241 kb on + strand, within LRK53_RS02345at 540.242 kb on - strand, within LRK53_RS02345at 540.242 kb on - strand, within LRK53_RS02345at 540.242 kb on - strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.891 kb on - strandat 540.891 kb on - strandat 540.891 kb on - strandat 540.939 kb on + strandat 540.940 kb on - strandat 540.940 kb on - strandat 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.394 kb on - strand, within LRK53_RS02350at 541.786 kb on + strand, within LRK53_RS02350at 541.873 kb on + strandat 541.873 kb on + strandat 541.873 kb on + strandat 541.873 kb on + strandat 541.874 kb on - strandat 542.154 kb on + strand, within LRK53_RS02355at 542.155 kb on - strand, within LRK53_RS02355at 542.155 kb on - strand, within LRK53_RS02355at 542.155 kb on - strand, within LRK53_RS02355at 542.155 kb on - strand, within LRK53_RS02355at 542.304 kb on + strand, within LRK53_RS02355at 542.304 kb on + strand, within LRK53_RS02355at 542.305 kb on - strand, within LRK53_RS02355at 542.868 kb on + strandat 542.868 kb on + strandat 542.868 kb on + strandat 542.868 kb on + strandat 542.868 kb on + strandat 542.868 kb on + strandat 542.869 kb on - strandat 542.869 kb on - strandat 542.869 kb on - strandat 542.869 kb on - strandat 542.869 kb on - strandat 542.869 kb on - strandat 542.869 kb on - strandat 542.869 kb on - strandat 542.869 kb on - strandat 542.869 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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540,241 + LRK53_RS02345 0.73 -1.0
540,241 + LRK53_RS02345 0.73 -0.8
540,242 - LRK53_RS02345 0.73 -1.0
540,242 - LRK53_RS02345 0.73 -0.1
540,242 - LRK53_RS02345 0.73 +0.0
540,302 + LRK53_RS02345 0.76 -0.4
540,302 + LRK53_RS02345 0.76 -0.6
540,302 + LRK53_RS02345 0.76 -1.3
540,302 + LRK53_RS02345 0.76 +0.1
540,302 + LRK53_RS02345 0.76 +1.0
540,302 + LRK53_RS02345 0.76 +0.2
540,302 + LRK53_RS02345 0.76 -0.9
540,302 + LRK53_RS02345 0.76 -0.8
540,302 + LRK53_RS02345 0.76 -0.2
540,303 - LRK53_RS02345 0.76 -0.4
540,303 - LRK53_RS02345 0.76 -0.2
540,303 - LRK53_RS02345 0.76 +0.4
540,303 - LRK53_RS02345 0.76 -1.6
540,303 - LRK53_RS02345 0.76 -0.6
540,303 - LRK53_RS02345 0.76 +0.4
540,303 - LRK53_RS02345 0.76 -1.6
540,303 - LRK53_RS02345 0.76 -1.5
540,303 - LRK53_RS02345 0.76 -1.0
540,561 + LRK53_RS02345 0.87 +0.0
540,561 + LRK53_RS02345 0.87 -0.6
540,561 + LRK53_RS02345 0.87 +0.7
540,561 + LRK53_RS02345 0.87 +0.6
540,561 + LRK53_RS02345 0.87 +1.0
540,561 + LRK53_RS02345 0.87 +1.0
540,561 + LRK53_RS02345 0.87 -1.4
540,561 + LRK53_RS02345 0.87 -1.0
540,561 + LRK53_RS02345 0.87 +1.0
540,561 + LRK53_RS02345 0.87 +1.1
540,561 + LRK53_RS02345 0.87 +0.7
540,561 + LRK53_RS02345 0.87 -1.0
540,561 + LRK53_RS02345 0.87 -0.8
540,561 + LRK53_RS02345 0.87 -1.3
540,562 - LRK53_RS02345 0.87 +0.3
540,562 - LRK53_RS02345 0.87 +0.0
540,562 - LRK53_RS02345 0.87 +1.0
540,562 - LRK53_RS02345 0.87 +1.0
540,562 - LRK53_RS02345 0.87 +0.4
540,562 - LRK53_RS02345 0.87 -1.8
540,562 - LRK53_RS02345 0.87 -0.4
540,562 - LRK53_RS02345 0.87 +0.0
540,890 + +1.4
540,890 + +0.0
540,890 + -2.0
540,890 + -1.0
540,890 + +1.6
540,890 + +0.0
540,891 - +0.0
540,891 - -0.3
540,891 - -0.8
540,939 + +0.0
540,940 - +0.0
540,940 - -0.8
541,054 + LRK53_RS02350 0.15 +1.0
541,054 + LRK53_RS02350 0.15 -1.0
541,054 + LRK53_RS02350 0.15 -0.3
541,054 + LRK53_RS02350 0.15 +1.0
541,054 + LRK53_RS02350 0.15 +0.0
541,054 + LRK53_RS02350 0.15 -0.3
541,055 - LRK53_RS02350 0.15 +1.0
541,055 - LRK53_RS02350 0.15 +1.0
541,055 - LRK53_RS02350 0.15 +1.0
541,055 - LRK53_RS02350 0.15 +0.4
541,055 - LRK53_RS02350 0.15 +0.6
541,055 - LRK53_RS02350 0.15 +0.0
541,055 - LRK53_RS02350 0.15 +0.0
541,055 - LRK53_RS02350 0.15 -0.2
541,055 - LRK53_RS02350 0.15 -1.0
541,394 - LRK53_RS02350 0.48 -1.3
541,786 + LRK53_RS02350 0.87 +0.0
541,873 + -0.6
541,873 + +1.0
541,873 + +1.0
541,873 + +1.7
541,874 - +0.3
542,154 + LRK53_RS02355 0.23 -1.3
542,155 - LRK53_RS02355 0.23 -2.4
542,155 - LRK53_RS02355 0.23 +2.0
542,155 - LRK53_RS02355 0.23 -0.8
542,155 - LRK53_RS02355 0.23 -1.1
542,304 + LRK53_RS02355 0.38 +1.0
542,304 + LRK53_RS02355 0.38 -1.6
542,305 - LRK53_RS02355 0.39 -1.5
542,868 + +0.0
542,868 + +0.0
542,868 + +0.3
542,868 + -2.0
542,868 + +0.1
542,868 + -1.0
542,869 - +1.0
542,869 - +0.8
542,869 - -1.9
542,869 - -0.6
542,869 - -0.5
542,869 - +1.0
542,869 - +0.0
542,869 - +1.0
542,869 - +0.0
542,869 - -1.0

Or see this region's nucleotide sequence