Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01120

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01115 and LRK53_RS01120 are separated by 4 nucleotidesLRK53_RS01120 and LRK53_RS01125 overlap by 24 nucleotides LRK53_RS01115: LRK53_RS01115 - SAM-dependent methyltransferase, at 278,257 to 279,450 _RS01115 LRK53_RS01120: LRK53_RS01120 - VanZ family protein, at 279,455 to 279,865 _RS01120 LRK53_RS01125: LRK53_RS01125 - sulfatase-like hydrolase/transferase, at 279,842 to 282,073 _RS01125 Position (kb) 279 280Strain fitness (log2 ratio) -2 -1 0 1 2at 279.581 kb on + strand, within LRK53_RS01120at 279.582 kb on - strand, within LRK53_RS01120at 279.644 kb on + strand, within LRK53_RS01120at 279.645 kb on - strand, within LRK53_RS01120at 279.645 kb on - strand, within LRK53_RS01120at 279.645 kb on - strand, within LRK53_RS01120at 279.789 kb on + strand, within LRK53_RS01120at 279.789 kb on + strand, within LRK53_RS01120at 280.026 kb on + strandat 280.026 kb on + strandat 280.026 kb on + strandat 280.026 kb on + strandat 280.026 kb on + strandat 280.026 kb on + strandat 280.026 kb on + strandat 280.026 kb on + strandat 280.026 kb on + strandat 280.027 kb on - strandat 280.027 kb on - strandat 280.027 kb on - strandat 280.027 kb on - strandat 280.027 kb on - strandat 280.027 kb on - strandat 280.027 kb on - strandat 280.029 kb on + strandat 280.029 kb on + strandat 280.029 kb on + strandat 280.029 kb on + strandat 280.029 kb on + strandat 280.029 kb on + strandat 280.029 kb on + strandat 280.030 kb on - strandat 280.030 kb on - strandat 280.030 kb on - strandat 280.030 kb on - strandat 280.030 kb on - strandat 280.030 kb on - strandat 280.095 kb on + strand, within LRK53_RS01125at 280.095 kb on + strand, within LRK53_RS01125at 280.095 kb on + strand, within LRK53_RS01125at 280.095 kb on + strand, within LRK53_RS01125at 280.095 kb on + strand, within LRK53_RS01125at 280.095 kb on + strand, within LRK53_RS01125at 280.096 kb on - strand, within LRK53_RS01125at 280.161 kb on + strand, within LRK53_RS01125at 280.161 kb on + strand, within LRK53_RS01125at 280.161 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.176 kb on + strand, within LRK53_RS01125at 280.177 kb on - strand, within LRK53_RS01125at 280.177 kb on - strand, within LRK53_RS01125at 280.177 kb on - strand, within LRK53_RS01125at 280.177 kb on - strand, within LRK53_RS01125at 280.177 kb on - strand, within LRK53_RS01125at 280.177 kb on - strand, within LRK53_RS01125at 280.177 kb on - strand, within LRK53_RS01125at 280.177 kb on - strand, within LRK53_RS01125at 280.228 kb on - strand, within LRK53_RS01125at 280.248 kb on + strand, within LRK53_RS01125at 280.249 kb on - strand, within LRK53_RS01125at 280.341 kb on + strand, within LRK53_RS01125at 280.341 kb on + strand, within LRK53_RS01125at 280.342 kb on - strand, within LRK53_RS01125at 280.342 kb on - strand, within LRK53_RS01125at 280.342 kb on - strand, within LRK53_RS01125at 280.342 kb on - strand, within LRK53_RS01125at 280.342 kb on - strand, within LRK53_RS01125at 280.342 kb on - strand, within LRK53_RS01125at 280.342 kb on - strand, within LRK53_RS01125at 280.342 kb on - strand, within LRK53_RS01125at 280.363 kb on - strand, within LRK53_RS01125at 280.363 kb on - strand, within LRK53_RS01125at 280.443 kb on + strand, within LRK53_RS01125at 280.443 kb on + strand, within LRK53_RS01125at 280.443 kb on + strand, within LRK53_RS01125at 280.443 kb on + strand, within LRK53_RS01125at 280.443 kb on + strand, within LRK53_RS01125at 280.443 kb on + strand, within LRK53_RS01125at 280.444 kb on - strand, within LRK53_RS01125at 280.444 kb on - strand, within LRK53_RS01125at 280.444 kb on - strand, within LRK53_RS01125at 280.444 kb on - strand, within LRK53_RS01125at 280.444 kb on - strand, within LRK53_RS01125at 280.444 kb on - strand, within LRK53_RS01125at 280.444 kb on - strand, within LRK53_RS01125at 280.494 kb on + strand, within LRK53_RS01125at 280.494 kb on + strand, within LRK53_RS01125at 280.494 kb on + strand, within LRK53_RS01125at 280.495 kb on - strand, within LRK53_RS01125at 280.495 kb on - strand, within LRK53_RS01125at 280.495 kb on - strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.554 kb on + strand, within LRK53_RS01125at 280.555 kb on - strand, within LRK53_RS01125at 280.555 kb on - strand, within LRK53_RS01125at 280.555 kb on - strand, within LRK53_RS01125at 280.555 kb on - strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.644 kb on + strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.645 kb on - strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.749 kb on + strand, within LRK53_RS01125at 280.750 kb on - strand, within LRK53_RS01125at 280.750 kb on - strand, within LRK53_RS01125at 280.750 kb on - strand, within LRK53_RS01125at 280.750 kb on - strand, within LRK53_RS01125at 280.750 kb on - strand, within LRK53_RS01125at 280.750 kb on - strand, within LRK53_RS01125at 280.750 kb on - strand, within LRK53_RS01125at 280.750 kb on - strand, within LRK53_RS01125at 280.750 kb on - strand, within LRK53_RS01125at 280.750 kb on - strand, within LRK53_RS01125at 280.750 kb on - strand, within LRK53_RS01125at 280.782 kb on + strand, within LRK53_RS01125

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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279,581 + LRK53_RS01120 0.31 +1.4
279,582 - LRK53_RS01120 0.31 +0.8
279,644 + LRK53_RS01120 0.46 +0.5
279,645 - LRK53_RS01120 0.46 -1.3
279,645 - LRK53_RS01120 0.46 -0.9
279,645 - LRK53_RS01120 0.46 -0.5
279,789 + LRK53_RS01120 0.81 -0.3
279,789 + LRK53_RS01120 0.81 +0.1
280,026 + +0.4
280,026 + -0.3
280,026 + +0.3
280,026 + -0.2
280,026 + +1.1
280,026 + -1.4
280,026 + -0.8
280,026 + -0.2
280,026 + -0.1
280,027 - +0.1
280,027 - -1.5
280,027 - -0.8
280,027 - -0.7
280,027 - +0.8
280,027 - -1.8
280,027 - -1.6
280,029 + -1.3
280,029 + +0.8
280,029 + -0.5
280,029 + -1.9
280,029 + -0.3
280,029 + +0.4
280,029 + -2.5
280,030 - -0.5
280,030 - +0.1
280,030 - +0.1
280,030 - +0.6
280,030 - +0.1
280,030 - -0.6
280,095 + LRK53_RS01125 0.11 -0.3
280,095 + LRK53_RS01125 0.11 -2.5
280,095 + LRK53_RS01125 0.11 -0.8
280,095 + LRK53_RS01125 0.11 -1.3
280,095 + LRK53_RS01125 0.11 -1.8
280,095 + LRK53_RS01125 0.11 +1.8
280,096 - LRK53_RS01125 0.11 -0.2
280,161 + LRK53_RS01125 0.14 -0.6
280,161 + LRK53_RS01125 0.14 -0.6
280,161 + LRK53_RS01125 0.14 -0.3
280,176 + LRK53_RS01125 0.15 -0.5
280,176 + LRK53_RS01125 0.15 +1.4
280,176 + LRK53_RS01125 0.15 +0.6
280,176 + LRK53_RS01125 0.15 +1.1
280,176 + LRK53_RS01125 0.15 -0.5
280,176 + LRK53_RS01125 0.15 -1.5
280,176 + LRK53_RS01125 0.15 +0.6
280,176 + LRK53_RS01125 0.15 +0.1
280,176 + LRK53_RS01125 0.15 -1.1
280,176 + LRK53_RS01125 0.15 -0.8
280,176 + LRK53_RS01125 0.15 -0.2
280,176 + LRK53_RS01125 0.15 -0.5
280,176 + LRK53_RS01125 0.15 -1.5
280,176 + LRK53_RS01125 0.15 -2.3
280,177 - LRK53_RS01125 0.15 +0.7
280,177 - LRK53_RS01125 0.15 +0.5
280,177 - LRK53_RS01125 0.15 +0.3
280,177 - LRK53_RS01125 0.15 -0.6
280,177 - LRK53_RS01125 0.15 -0.9
280,177 - LRK53_RS01125 0.15 +0.5
280,177 - LRK53_RS01125 0.15 -0.7
280,177 - LRK53_RS01125 0.15 +1.1
280,228 - LRK53_RS01125 0.17 -0.2
280,248 + LRK53_RS01125 0.18 +0.5
280,249 - LRK53_RS01125 0.18 -0.9
280,341 + LRK53_RS01125 0.22 +0.3
280,341 + LRK53_RS01125 0.22 +0.1
280,342 - LRK53_RS01125 0.22 -1.1
280,342 - LRK53_RS01125 0.22 -0.8
280,342 - LRK53_RS01125 0.22 +0.5
280,342 - LRK53_RS01125 0.22 -0.9
280,342 - LRK53_RS01125 0.22 -0.9
280,342 - LRK53_RS01125 0.22 +2.1
280,342 - LRK53_RS01125 0.22 -1.9
280,342 - LRK53_RS01125 0.22 -0.1
280,363 - LRK53_RS01125 0.23 -1.1
280,363 - LRK53_RS01125 0.23 +0.1
280,443 + LRK53_RS01125 0.27 -1.3
280,443 + LRK53_RS01125 0.27 -0.3
280,443 + LRK53_RS01125 0.27 -1.2
280,443 + LRK53_RS01125 0.27 +0.6
280,443 + LRK53_RS01125 0.27 +0.1
280,443 + LRK53_RS01125 0.27 +0.5
280,444 - LRK53_RS01125 0.27 +1.1
280,444 - LRK53_RS01125 0.27 -2.6
280,444 - LRK53_RS01125 0.27 +0.2
280,444 - LRK53_RS01125 0.27 -0.2
280,444 - LRK53_RS01125 0.27 +1.1
280,444 - LRK53_RS01125 0.27 -1.9
280,444 - LRK53_RS01125 0.27 +0.1
280,494 + LRK53_RS01125 0.29 +0.1
280,494 + LRK53_RS01125 0.29 +0.1
280,494 + LRK53_RS01125 0.29 -0.3
280,495 - LRK53_RS01125 0.29 +1.4
280,495 - LRK53_RS01125 0.29 +0.7
280,495 - LRK53_RS01125 0.29 -0.7
280,554 + LRK53_RS01125 0.32 -1.9
280,554 + LRK53_RS01125 0.32 -1.0
280,554 + LRK53_RS01125 0.32 -0.9
280,554 + LRK53_RS01125 0.32 -0.5
280,554 + LRK53_RS01125 0.32 -1.4
280,554 + LRK53_RS01125 0.32 -1.6
280,554 + LRK53_RS01125 0.32 +0.1
280,554 + LRK53_RS01125 0.32 -0.9
280,554 + LRK53_RS01125 0.32 -0.5
280,554 + LRK53_RS01125 0.32 -1.4
280,554 + LRK53_RS01125 0.32 +0.1
280,554 + LRK53_RS01125 0.32 -2.1
280,555 - LRK53_RS01125 0.32 +0.1
280,555 - LRK53_RS01125 0.32 +1.1
280,555 - LRK53_RS01125 0.32 -0.6
280,555 - LRK53_RS01125 0.32 +0.1
280,644 + LRK53_RS01125 0.36 +0.1
280,644 + LRK53_RS01125 0.36 +1.1
280,644 + LRK53_RS01125 0.36 +1.1
280,644 + LRK53_RS01125 0.36 -0.5
280,644 + LRK53_RS01125 0.36 -0.2
280,644 + LRK53_RS01125 0.36 +0.6
280,644 + LRK53_RS01125 0.36 +0.5
280,644 + LRK53_RS01125 0.36 -2.1
280,644 + LRK53_RS01125 0.36 +2.1
280,644 + LRK53_RS01125 0.36 -2.1
280,644 + LRK53_RS01125 0.36 +0.1
280,644 + LRK53_RS01125 0.36 -2.5
280,644 + LRK53_RS01125 0.36 +1.5
280,644 + LRK53_RS01125 0.36 -0.7
280,644 + LRK53_RS01125 0.36 -0.7
280,645 - LRK53_RS01125 0.36 -1.0
280,645 - LRK53_RS01125 0.36 -0.9
280,645 - LRK53_RS01125 0.36 +0.1
280,645 - LRK53_RS01125 0.36 -0.9
280,645 - LRK53_RS01125 0.36 +1.1
280,645 - LRK53_RS01125 0.36 -1.0
280,645 - LRK53_RS01125 0.36 +0.8
280,645 - LRK53_RS01125 0.36 -0.0
280,645 - LRK53_RS01125 0.36 -0.4
280,645 - LRK53_RS01125 0.36 +0.6
280,645 - LRK53_RS01125 0.36 -1.5
280,645 - LRK53_RS01125 0.36 -1.3
280,645 - LRK53_RS01125 0.36 -0.6
280,645 - LRK53_RS01125 0.36 +0.2
280,645 - LRK53_RS01125 0.36 -0.9
280,645 - LRK53_RS01125 0.36 -0.6
280,645 - LRK53_RS01125 0.36 +1.1
280,645 - LRK53_RS01125 0.36 +1.1
280,645 - LRK53_RS01125 0.36 -0.0
280,645 - LRK53_RS01125 0.36 -1.1
280,645 - LRK53_RS01125 0.36 -0.3
280,749 + LRK53_RS01125 0.41 +1.5
280,749 + LRK53_RS01125 0.41 -0.3
280,749 + LRK53_RS01125 0.41 -0.5
280,749 + LRK53_RS01125 0.41 -0.6
280,749 + LRK53_RS01125 0.41 -0.9
280,749 + LRK53_RS01125 0.41 -1.4
280,749 + LRK53_RS01125 0.41 -2.6
280,749 + LRK53_RS01125 0.41 -0.8
280,749 + LRK53_RS01125 0.41 +1.5
280,749 + LRK53_RS01125 0.41 +0.3
280,749 + LRK53_RS01125 0.41 -1.6
280,749 + LRK53_RS01125 0.41 +0.5
280,749 + LRK53_RS01125 0.41 -2.4
280,749 + LRK53_RS01125 0.41 -1.8
280,749 + LRK53_RS01125 0.41 -0.9
280,749 + LRK53_RS01125 0.41 -0.0
280,749 + LRK53_RS01125 0.41 -0.5
280,750 - LRK53_RS01125 0.41 -2.2
280,750 - LRK53_RS01125 0.41 -1.8
280,750 - LRK53_RS01125 0.41 -1.3
280,750 - LRK53_RS01125 0.41 -1.8
280,750 - LRK53_RS01125 0.41 -0.5
280,750 - LRK53_RS01125 0.41 +0.8
280,750 - LRK53_RS01125 0.41 -0.5
280,750 - LRK53_RS01125 0.41 +0.5
280,750 - LRK53_RS01125 0.41 -0.5
280,750 - LRK53_RS01125 0.41 -1.1
280,750 - LRK53_RS01125 0.41 -1.5
280,782 + LRK53_RS01125 0.42 -0.5

Or see this region's nucleotide sequence