Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03640

Experiment: G1M1_D3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03635 and HUW76_03640 are separated by 28 nucleotidesHUW76_03640 and HUW76_03645 are separated by 259 nucleotides HUW76_03635: HUW76_03635 - sigma-54-dependent Fis family transcriptional regulator, at 725,462 to 726,847 _03635 HUW76_03640: HUW76_03640 - SurA N-terminal domain-containing protein, at 726,876 to 728,567 _03640 HUW76_03645: HUW76_03645 - DNA primase, at 728,827 to 730,635 _03645 Position (kb) 726 727 728 729Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 725.905 kb on + strand, within HUW76_03635at 725.905 kb on + strand, within HUW76_03635at 725.968 kb on + strand, within HUW76_03635at 725.968 kb on + strand, within HUW76_03635at 725.984 kb on + strand, within HUW76_03635at 725.984 kb on + strand, within HUW76_03635at 726.049 kb on + strand, within HUW76_03635at 726.049 kb on + strand, within HUW76_03635at 726.059 kb on + strand, within HUW76_03635at 726.059 kb on + strand, within HUW76_03635at 726.247 kb on + strand, within HUW76_03635at 726.247 kb on + strand, within HUW76_03635at 726.291 kb on + strand, within HUW76_03635at 726.381 kb on + strand, within HUW76_03635at 726.420 kb on + strand, within HUW76_03635at 726.631 kb on + strand, within HUW76_03635at 726.646 kb on + strand, within HUW76_03635at 726.646 kb on + strand, within HUW76_03635at 726.793 kb on + strandat 726.798 kb on + strandat 726.962 kb on + strandat 727.189 kb on + strand, within HUW76_03640at 727.215 kb on + strand, within HUW76_03640at 727.215 kb on + strand, within HUW76_03640at 727.215 kb on + strand, within HUW76_03640at 727.217 kb on + strand, within HUW76_03640at 727.217 kb on + strand, within HUW76_03640at 727.226 kb on + strand, within HUW76_03640at 727.230 kb on + strand, within HUW76_03640at 727.266 kb on + strand, within HUW76_03640at 727.267 kb on + strand, within HUW76_03640at 727.267 kb on + strand, within HUW76_03640at 727.647 kb on + strand, within HUW76_03640at 727.779 kb on + strand, within HUW76_03640at 727.789 kb on + strand, within HUW76_03640at 727.959 kb on + strand, within HUW76_03640at 727.998 kb on + strand, within HUW76_03640at 728.004 kb on + strand, within HUW76_03640at 728.004 kb on + strand, within HUW76_03640at 728.004 kb on + strand, within HUW76_03640at 728.035 kb on + strand, within HUW76_03640at 728.221 kb on + strand, within HUW76_03640at 728.258 kb on + strand, within HUW76_03640at 728.314 kb on + strand, within HUW76_03640at 728.314 kb on + strand, within HUW76_03640at 728.314 kb on + strand, within HUW76_03640at 728.319 kb on + strand, within HUW76_03640at 728.327 kb on + strand, within HUW76_03640at 728.327 kb on + strand, within HUW76_03640at 728.327 kb on + strand, within HUW76_03640at 728.327 kb on + strand, within HUW76_03640at 728.327 kb on + strand, within HUW76_03640at 728.329 kb on + strand, within HUW76_03640at 728.329 kb on + strand, within HUW76_03640at 728.329 kb on + strand, within HUW76_03640at 728.363 kb on + strand, within HUW76_03640at 728.363 kb on + strand, within HUW76_03640at 728.459 kb on + strandat 728.510 kb on + strandat 728.544 kb on + strandat 728.795 kb on + strandat 728.795 kb on + strandat 728.795 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D3
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725,905 + HUW76_03635 0.32 -2.1
725,905 + HUW76_03635 0.32 -3.8
725,968 + HUW76_03635 0.37 -3.2
725,968 + HUW76_03635 0.37 -2.7
725,984 + HUW76_03635 0.38 -1.2
725,984 + HUW76_03635 0.38 -1.5
726,049 + HUW76_03635 0.42 -1.4
726,049 + HUW76_03635 0.42 -2.4
726,059 + HUW76_03635 0.43 -2.9
726,059 + HUW76_03635 0.43 -3.5
726,247 + HUW76_03635 0.57 -3.3
726,247 + HUW76_03635 0.57 -2.5
726,291 + HUW76_03635 0.60 -4.1
726,381 + HUW76_03635 0.66 -3.5
726,420 + HUW76_03635 0.69 -3.0
726,631 + HUW76_03635 0.84 -0.4
726,646 + HUW76_03635 0.85 -3.7
726,646 + HUW76_03635 0.85 -2.7
726,793 + -3.0
726,798 + -2.2
726,962 + -4.5
727,189 + HUW76_03640 0.18 -2.9
727,215 + HUW76_03640 0.20 -3.6
727,215 + HUW76_03640 0.20 -0.5
727,215 + HUW76_03640 0.20 -1.4
727,217 + HUW76_03640 0.20 +0.0
727,217 + HUW76_03640 0.20 -1.1
727,226 + HUW76_03640 0.21 +0.3
727,230 + HUW76_03640 0.21 -1.9
727,266 + HUW76_03640 0.23 -1.8
727,267 + HUW76_03640 0.23 -3.6
727,267 + HUW76_03640 0.23 -3.2
727,647 + HUW76_03640 0.46 -1.9
727,779 + HUW76_03640 0.53 -3.7
727,789 + HUW76_03640 0.54 -1.8
727,959 + HUW76_03640 0.64 -2.7
727,998 + HUW76_03640 0.66 -2.5
728,004 + HUW76_03640 0.67 -1.7
728,004 + HUW76_03640 0.67 -3.9
728,004 + HUW76_03640 0.67 -3.2
728,035 + HUW76_03640 0.68 -2.8
728,221 + HUW76_03640 0.79 -1.8
728,258 + HUW76_03640 0.82 -2.0
728,314 + HUW76_03640 0.85 -2.5
728,314 + HUW76_03640 0.85 -2.5
728,314 + HUW76_03640 0.85 -1.0
728,319 + HUW76_03640 0.85 -1.4
728,327 + HUW76_03640 0.86 -3.1
728,327 + HUW76_03640 0.86 -2.7
728,327 + HUW76_03640 0.86 -1.9
728,327 + HUW76_03640 0.86 -2.7
728,327 + HUW76_03640 0.86 -0.9
728,329 + HUW76_03640 0.86 -1.9
728,329 + HUW76_03640 0.86 +0.8
728,329 + HUW76_03640 0.86 -0.2
728,363 + HUW76_03640 0.88 -2.1
728,363 + HUW76_03640 0.88 -0.9
728,459 + -2.8
728,510 + -1.7
728,544 + -4.6
728,795 + -4.8
728,795 + -4.1
728,795 + -2.1

Or see this region's nucleotide sequence