Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08600

Experiment: R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08590 and LRK53_RS08595 are separated by 153 nucleotidesLRK53_RS08595 and LRK53_RS08600 overlap by 4 nucleotidesLRK53_RS08600 and LRK53_RS08605 are separated by 141 nucleotides LRK53_RS08590: LRK53_RS08590 - oligopeptide:H+ symporter, at 1,925,680 to 1,927,233 _RS08590 LRK53_RS08595: LRK53_RS08595 - DUF72 domain-containing protein, at 1,927,387 to 1,928,226 _RS08595 LRK53_RS08600: LRK53_RS08600 - phosphatase PAP2 family protein, at 1,928,223 to 1,929,017 _RS08600 LRK53_RS08605: LRK53_RS08605 - serine hydrolase, at 1,929,159 to 1,930,832 _RS08605 Position (kb) 1928 1929 1930Strain fitness (log2 ratio) -2 -1 0 1 2at 1927.245 kb on - strandat 1927.245 kb on - strandat 1927.245 kb on - strandat 1927.388 kb on + strandat 1927.388 kb on + strandat 1927.388 kb on + strandat 1927.388 kb on + strandat 1927.388 kb on + strandat 1927.595 kb on + strand, within LRK53_RS08595at 1927.595 kb on + strand, within LRK53_RS08595at 1927.596 kb on - strand, within LRK53_RS08595at 1927.673 kb on + strand, within LRK53_RS08595at 1927.673 kb on + strand, within LRK53_RS08595at 1927.674 kb on - strand, within LRK53_RS08595at 1927.730 kb on + strand, within LRK53_RS08595at 1927.730 kb on + strand, within LRK53_RS08595at 1927.731 kb on - strand, within LRK53_RS08595at 1927.731 kb on - strand, within LRK53_RS08595at 1927.731 kb on - strand, within LRK53_RS08595at 1927.967 kb on + strand, within LRK53_RS08595at 1927.967 kb on + strand, within LRK53_RS08595at 1927.967 kb on + strand, within LRK53_RS08595at 1927.967 kb on + strand, within LRK53_RS08595at 1927.967 kb on + strand, within LRK53_RS08595at 1927.968 kb on - strand, within LRK53_RS08595at 1927.968 kb on - strand, within LRK53_RS08595at 1927.968 kb on - strand, within LRK53_RS08595at 1928.027 kb on + strand, within LRK53_RS08595at 1928.028 kb on - strand, within LRK53_RS08595at 1928.028 kb on - strand, within LRK53_RS08595at 1928.028 kb on - strand, within LRK53_RS08595at 1928.028 kb on - strand, within LRK53_RS08595at 1928.051 kb on + strand, within LRK53_RS08595at 1928.051 kb on + strand, within LRK53_RS08595at 1928.052 kb on - strand, within LRK53_RS08595at 1928.096 kb on + strand, within LRK53_RS08595at 1928.097 kb on - strand, within LRK53_RS08595at 1928.132 kb on + strand, within LRK53_RS08595at 1928.156 kb on + strandat 1928.156 kb on + strandat 1928.156 kb on + strandat 1928.157 kb on - strandat 1928.157 kb on - strandat 1928.157 kb on - strandat 1928.157 kb on - strandat 1928.157 kb on - strandat 1928.233 kb on - strandat 1928.329 kb on + strand, within LRK53_RS08600at 1928.329 kb on + strand, within LRK53_RS08600at 1928.329 kb on + strand, within LRK53_RS08600at 1928.329 kb on + strand, within LRK53_RS08600at 1928.329 kb on + strand, within LRK53_RS08600at 1928.329 kb on + strand, within LRK53_RS08600at 1928.330 kb on - strand, within LRK53_RS08600at 1928.330 kb on - strand, within LRK53_RS08600at 1928.330 kb on - strand, within LRK53_RS08600at 1928.330 kb on - strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.452 kb on + strand, within LRK53_RS08600at 1928.452 kb on + strand, within LRK53_RS08600at 1928.453 kb on - strand, within LRK53_RS08600at 1928.868 kb on + strand, within LRK53_RS08600at 1928.868 kb on + strand, within LRK53_RS08600at 1928.868 kb on + strand, within LRK53_RS08600at 1928.868 kb on + strand, within LRK53_RS08600at 1928.869 kb on - strand, within LRK53_RS08600at 1928.869 kb on - strand, within LRK53_RS08600at 1928.869 kb on - strand, within LRK53_RS08600at 1928.869 kb on - strand, within LRK53_RS08600at 1928.869 kb on - strand, within LRK53_RS08600at 1928.920 kb on + strand, within LRK53_RS08600at 1928.920 kb on + strand, within LRK53_RS08600at 1928.920 kb on + strand, within LRK53_RS08600at 1928.921 kb on - strand, within LRK53_RS08600at 1928.921 kb on - strand, within LRK53_RS08600at 1929.127 kb on + strandat 1929.324 kb on + strandat 1929.324 kb on + strandat 1929.325 kb on - strandat 1929.588 kb on + strand, within LRK53_RS08605at 1929.588 kb on + strand, within LRK53_RS08605at 1929.588 kb on + strand, within LRK53_RS08605at 1929.588 kb on + strand, within LRK53_RS08605at 1929.588 kb on + strand, within LRK53_RS08605at 1929.588 kb on + strand, within LRK53_RS08605at 1929.588 kb on + strand, within LRK53_RS08605at 1929.588 kb on + strand, within LRK53_RS08605at 1929.588 kb on + strand, within LRK53_RS08605at 1929.588 kb on + strand, within LRK53_RS08605at 1929.588 kb on + strand, within LRK53_RS08605at 1929.589 kb on - strand, within LRK53_RS08605at 1929.589 kb on - strand, within LRK53_RS08605at 1929.589 kb on - strand, within LRK53_RS08605at 1929.589 kb on - strand, within LRK53_RS08605at 1929.589 kb on - strand, within LRK53_RS08605at 1929.589 kb on - strand, within LRK53_RS08605at 1929.589 kb on - strand, within LRK53_RS08605at 1929.589 kb on - strand, within LRK53_RS08605at 1929.589 kb on - strand, within LRK53_RS08605at 1929.666 kb on + strand, within LRK53_RS08605at 1929.666 kb on + strand, within LRK53_RS08605at 1929.666 kb on + strand, within LRK53_RS08605at 1929.667 kb on - strand, within LRK53_RS08605at 1929.667 kb on - strand, within LRK53_RS08605at 1929.667 kb on - strand, within LRK53_RS08605at 1929.667 kb on - strand, within LRK53_RS08605at 1929.684 kb on + strand, within LRK53_RS08605at 1929.684 kb on + strand, within LRK53_RS08605at 1929.684 kb on + strand, within LRK53_RS08605at 1929.684 kb on + strand, within LRK53_RS08605at 1929.684 kb on + strand, within LRK53_RS08605at 1929.684 kb on + strand, within LRK53_RS08605at 1929.684 kb on + strand, within LRK53_RS08605at 1929.685 kb on - strand, within LRK53_RS08605at 1929.685 kb on - strand, within LRK53_RS08605at 1929.685 kb on - strand, within LRK53_RS08605at 1929.685 kb on - strand, within LRK53_RS08605at 1929.685 kb on - strand, within LRK53_RS08605at 1929.685 kb on - strand, within LRK53_RS08605at 1929.685 kb on - strand, within LRK53_RS08605at 1929.750 kb on + strand, within LRK53_RS08605at 1929.750 kb on + strand, within LRK53_RS08605at 1929.750 kb on + strand, within LRK53_RS08605at 1929.750 kb on + strand, within LRK53_RS08605at 1929.750 kb on + strand, within LRK53_RS08605at 1929.751 kb on - strand, within LRK53_RS08605at 1929.756 kb on + strand, within LRK53_RS08605at 1929.756 kb on + strand, within LRK53_RS08605at 1929.757 kb on - strand, within LRK53_RS08605at 1929.757 kb on - strand, within LRK53_RS08605at 1929.816 kb on + strand, within LRK53_RS08605at 1929.817 kb on - strand, within LRK53_RS08605at 1929.817 kb on - strand, within LRK53_RS08605at 1929.817 kb on - strand, within LRK53_RS08605at 1929.817 kb on - strand, within LRK53_RS08605at 1929.825 kb on + strand, within LRK53_RS08605at 1929.825 kb on + strand, within LRK53_RS08605at 1929.825 kb on + strand, within LRK53_RS08605at 1929.826 kb on - strand, within LRK53_RS08605at 1929.826 kb on - strand, within LRK53_RS08605at 1929.826 kb on - strand, within LRK53_RS08605at 1929.826 kb on - strand, within LRK53_RS08605at 1929.996 kb on + strand, within LRK53_RS08605at 1929.996 kb on + strand, within LRK53_RS08605at 1929.997 kb on - strand, within LRK53_RS08605at 1929.997 kb on - strand, within LRK53_RS08605

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
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1,927,245 - -0.7
1,927,245 - -1.6
1,927,245 - +0.9
1,927,388 + -0.3
1,927,388 + +0.6
1,927,388 + +0.9
1,927,388 + -0.1
1,927,388 + -2.1
1,927,595 + LRK53_RS08595 0.25 -0.5
1,927,595 + LRK53_RS08595 0.25 +0.9
1,927,596 - LRK53_RS08595 0.25 +0.9
1,927,673 + LRK53_RS08595 0.34 -1.4
1,927,673 + LRK53_RS08595 0.34 -2.0
1,927,674 - LRK53_RS08595 0.34 -1.3
1,927,730 + LRK53_RS08595 0.41 -1.3
1,927,730 + LRK53_RS08595 0.41 +0.5
1,927,731 - LRK53_RS08595 0.41 -0.1
1,927,731 - LRK53_RS08595 0.41 -1.7
1,927,731 - LRK53_RS08595 0.41 -0.1
1,927,967 + LRK53_RS08595 0.69 -0.2
1,927,967 + LRK53_RS08595 0.69 -0.1
1,927,967 + LRK53_RS08595 0.69 -1.6
1,927,967 + LRK53_RS08595 0.69 -0.1
1,927,967 + LRK53_RS08595 0.69 -0.1
1,927,968 - LRK53_RS08595 0.69 +0.3
1,927,968 - LRK53_RS08595 0.69 -0.1
1,927,968 - LRK53_RS08595 0.69 -0.7
1,928,027 + LRK53_RS08595 0.76 +0.9
1,928,028 - LRK53_RS08595 0.76 +0.7
1,928,028 - LRK53_RS08595 0.76 -0.6
1,928,028 - LRK53_RS08595 0.76 -1.4
1,928,028 - LRK53_RS08595 0.76 -1.1
1,928,051 + LRK53_RS08595 0.79 -0.1
1,928,051 + LRK53_RS08595 0.79 -0.7
1,928,052 - LRK53_RS08595 0.79 -0.1
1,928,096 + LRK53_RS08595 0.84 -1.4
1,928,097 - LRK53_RS08595 0.85 -1.1
1,928,132 + LRK53_RS08595 0.89 +0.9
1,928,156 + -0.5
1,928,156 + -1.1
1,928,156 + -0.8
1,928,157 - -1.2
1,928,157 - -0.7
1,928,157 - +0.9
1,928,157 - -0.7
1,928,157 - -0.0
1,928,233 - +0.5
1,928,329 + LRK53_RS08600 0.13 -0.1
1,928,329 + LRK53_RS08600 0.13 -0.1
1,928,329 + LRK53_RS08600 0.13 -1.1
1,928,329 + LRK53_RS08600 0.13 -0.4
1,928,329 + LRK53_RS08600 0.13 -1.9
1,928,329 + LRK53_RS08600 0.13 -0.5
1,928,330 - LRK53_RS08600 0.13 -0.1
1,928,330 - LRK53_RS08600 0.13 -0.8
1,928,330 - LRK53_RS08600 0.13 +0.3
1,928,330 - LRK53_RS08600 0.13 +1.5
1,928,437 + LRK53_RS08600 0.27 -1.4
1,928,437 + LRK53_RS08600 0.27 -1.5
1,928,437 + LRK53_RS08600 0.27 -1.4
1,928,437 + LRK53_RS08600 0.27 -1.1
1,928,437 + LRK53_RS08600 0.27 -1.4
1,928,437 + LRK53_RS08600 0.27 +0.9
1,928,437 + LRK53_RS08600 0.27 -1.1
1,928,437 + LRK53_RS08600 0.27 +0.9
1,928,437 + LRK53_RS08600 0.27 -1.9
1,928,438 - LRK53_RS08600 0.27 -0.1
1,928,438 - LRK53_RS08600 0.27 -0.7
1,928,438 - LRK53_RS08600 0.27 -1.7
1,928,438 - LRK53_RS08600 0.27 -1.3
1,928,438 - LRK53_RS08600 0.27 -1.0
1,928,438 - LRK53_RS08600 0.27 +0.9
1,928,438 - LRK53_RS08600 0.27 -1.4
1,928,438 - LRK53_RS08600 0.27 -1.8
1,928,438 - LRK53_RS08600 0.27 +0.0
1,928,438 - LRK53_RS08600 0.27 +1.9
1,928,452 + LRK53_RS08600 0.29 -1.1
1,928,452 + LRK53_RS08600 0.29 +0.5
1,928,453 - LRK53_RS08600 0.29 +0.4
1,928,868 + LRK53_RS08600 0.81 -1.8
1,928,868 + LRK53_RS08600 0.81 -0.5
1,928,868 + LRK53_RS08600 0.81 -1.1
1,928,868 + LRK53_RS08600 0.81 +0.9
1,928,869 - LRK53_RS08600 0.81 -0.6
1,928,869 - LRK53_RS08600 0.81 -0.2
1,928,869 - LRK53_RS08600 0.81 +0.9
1,928,869 - LRK53_RS08600 0.81 -0.1
1,928,869 - LRK53_RS08600 0.81 -0.7
1,928,920 + LRK53_RS08600 0.88 -1.1
1,928,920 + LRK53_RS08600 0.88 -0.5
1,928,920 + LRK53_RS08600 0.88 -1.8
1,928,921 - LRK53_RS08600 0.88 -0.1
1,928,921 - LRK53_RS08600 0.88 -1.1
1,929,127 + -0.7
1,929,324 + -1.2
1,929,324 + -1.7
1,929,325 - -2.1
1,929,588 + LRK53_RS08605 0.26 -1.1
1,929,588 + LRK53_RS08605 0.26 -1.0
1,929,588 + LRK53_RS08605 0.26 -0.4
1,929,588 + LRK53_RS08605 0.26 -0.6
1,929,588 + LRK53_RS08605 0.26 -0.8
1,929,588 + LRK53_RS08605 0.26 +0.0
1,929,588 + LRK53_RS08605 0.26 -0.6
1,929,588 + LRK53_RS08605 0.26 -0.8
1,929,588 + LRK53_RS08605 0.26 -1.1
1,929,588 + LRK53_RS08605 0.26 +0.2
1,929,588 + LRK53_RS08605 0.26 +0.9
1,929,589 - LRK53_RS08605 0.26 -0.5
1,929,589 - LRK53_RS08605 0.26 -2.1
1,929,589 - LRK53_RS08605 0.26 +0.9
1,929,589 - LRK53_RS08605 0.26 -0.8
1,929,589 - LRK53_RS08605 0.26 -0.1
1,929,589 - LRK53_RS08605 0.26 -2.1
1,929,589 - LRK53_RS08605 0.26 -2.3
1,929,589 - LRK53_RS08605 0.26 +0.3
1,929,589 - LRK53_RS08605 0.26 -0.3
1,929,666 + LRK53_RS08605 0.30 -0.9
1,929,666 + LRK53_RS08605 0.30 -1.1
1,929,666 + LRK53_RS08605 0.30 +0.5
1,929,667 - LRK53_RS08605 0.30 -2.4
1,929,667 - LRK53_RS08605 0.30 +1.2
1,929,667 - LRK53_RS08605 0.30 -0.8
1,929,667 - LRK53_RS08605 0.30 -1.9
1,929,684 + LRK53_RS08605 0.31 -0.4
1,929,684 + LRK53_RS08605 0.31 -0.1
1,929,684 + LRK53_RS08605 0.31 -1.6
1,929,684 + LRK53_RS08605 0.31 -0.7
1,929,684 + LRK53_RS08605 0.31 -0.1
1,929,684 + LRK53_RS08605 0.31 -0.7
1,929,684 + LRK53_RS08605 0.31 +0.3
1,929,685 - LRK53_RS08605 0.31 -0.5
1,929,685 - LRK53_RS08605 0.31 -1.4
1,929,685 - LRK53_RS08605 0.31 -0.7
1,929,685 - LRK53_RS08605 0.31 -1.4
1,929,685 - LRK53_RS08605 0.31 +0.3
1,929,685 - LRK53_RS08605 0.31 +0.3
1,929,685 - LRK53_RS08605 0.31 -0.3
1,929,750 + LRK53_RS08605 0.35 -0.4
1,929,750 + LRK53_RS08605 0.35 -0.8
1,929,750 + LRK53_RS08605 0.35 -0.0
1,929,750 + LRK53_RS08605 0.35 -0.1
1,929,750 + LRK53_RS08605 0.35 -1.0
1,929,751 - LRK53_RS08605 0.35 -0.1
1,929,756 + LRK53_RS08605 0.36 -1.1
1,929,756 + LRK53_RS08605 0.36 +2.5
1,929,757 - LRK53_RS08605 0.36 +0.3
1,929,757 - LRK53_RS08605 0.36 -0.1
1,929,816 + LRK53_RS08605 0.39 -0.9
1,929,817 - LRK53_RS08605 0.39 +0.3
1,929,817 - LRK53_RS08605 0.39 -0.2
1,929,817 - LRK53_RS08605 0.39 -2.6
1,929,817 - LRK53_RS08605 0.39 -0.7
1,929,825 + LRK53_RS08605 0.40 -0.1
1,929,825 + LRK53_RS08605 0.40 -0.8
1,929,825 + LRK53_RS08605 0.40 -0.1
1,929,826 - LRK53_RS08605 0.40 +0.0
1,929,826 - LRK53_RS08605 0.40 -1.3
1,929,826 - LRK53_RS08605 0.40 +1.9
1,929,826 - LRK53_RS08605 0.40 -0.7
1,929,996 + LRK53_RS08605 0.50 -1.0
1,929,996 + LRK53_RS08605 0.50 -1.4
1,929,997 - LRK53_RS08605 0.50 +0.9
1,929,997 - LRK53_RS08605 0.50 +0.6

Or see this region's nucleotide sequence