Experiment: R2A_PIPES with Aluminum chloride 1.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03330 and LRK53_RS03335 are separated by 157 nucleotides LRK53_RS03335 and LRK53_RS03340 are separated by 208 nucleotides
LRK53_RS03330: LRK53_RS03330 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 785,797 to 786,621
_RS03330
LRK53_RS03335: LRK53_RS03335 - aldo/keto reductase, at 786,779 to 787,771
_RS03335
LRK53_RS03340: LRK53_RS03340 - glutathione S-transferase family protein, at 787,980 to 788,732
_RS03340
Position (kb) 786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 785.799 kb on - strand at 785.799 kb on - strand at 785.891 kb on + strand, within LRK53_RS03330 at 785.892 kb on - strand, within LRK53_RS03330 at 786.356 kb on + strand, within LRK53_RS03330 at 786.357 kb on - strand, within LRK53_RS03330 at 786.357 kb on - strand, within LRK53_RS03330 at 786.357 kb on - strand, within LRK53_RS03330 at 786.357 kb on - strand, within LRK53_RS03330 at 786.578 kb on + strand at 786.578 kb on + strand at 786.578 kb on + strand at 786.578 kb on + strand at 786.579 kb on - strand at 786.579 kb on - strand at 786.579 kb on - strand at 786.579 kb on - strand at 786.579 kb on - strand at 786.579 kb on - strand at 786.621 kb on + strand at 786.621 kb on + strand at 786.622 kb on - strand at 786.622 kb on - strand at 786.622 kb on - strand at 786.633 kb on + strand at 786.634 kb on - strand at 786.713 kb on - strand at 786.813 kb on + strand at 786.813 kb on + strand at 786.813 kb on + strand at 786.814 kb on - strand at 787.161 kb on + strand, within LRK53_RS03335 at 787.161 kb on + strand, within LRK53_RS03335 at 787.161 kb on + strand, within LRK53_RS03335 at 787.404 kb on + strand, within LRK53_RS03335 at 787.404 kb on + strand, within LRK53_RS03335 at 787.404 kb on + strand, within LRK53_RS03335 at 787.404 kb on + strand, within LRK53_RS03335 at 787.404 kb on + strand, within LRK53_RS03335 at 787.404 kb on + strand, within LRK53_RS03335 at 787.404 kb on + strand, within LRK53_RS03335 at 787.405 kb on - strand, within LRK53_RS03335 at 787.405 kb on - strand, within LRK53_RS03335 at 787.405 kb on - strand, within LRK53_RS03335 at 787.405 kb on - strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.407 kb on + strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.408 kb on - strand, within LRK53_RS03335 at 787.467 kb on + strand, within LRK53_RS03335 at 787.467 kb on + strand, within LRK53_RS03335 at 787.467 kb on + strand, within LRK53_RS03335 at 787.467 kb on + strand, within LRK53_RS03335 at 787.468 kb on - strand, within LRK53_RS03335 at 787.468 kb on - strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.605 kb on + strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.606 kb on - strand, within LRK53_RS03335 at 787.692 kb on + strand at 787.693 kb on - strand at 787.827 kb on + strand at 787.828 kb on - strand at 788.296 kb on + strand, within LRK53_RS03340 at 788.296 kb on + strand, within LRK53_RS03340 at 788.297 kb on - strand, within LRK53_RS03340 at 788.297 kb on - strand, within LRK53_RS03340 at 788.297 kb on - strand, within LRK53_RS03340 at 788.437 kb on + strand, within LRK53_RS03340 at 788.437 kb on + strand, within LRK53_RS03340 at 788.438 kb on - strand, within LRK53_RS03340 at 788.438 kb on - strand, within LRK53_RS03340 at 788.438 kb on - strand, within LRK53_RS03340 at 788.438 kb on - strand, within LRK53_RS03340 at 788.438 kb on - strand, within LRK53_RS03340 at 788.438 kb on - strand, within LRK53_RS03340 at 788.438 kb on - strand, within LRK53_RS03340 at 788.438 kb on - strand, within LRK53_RS03340 at 788.486 kb on - strand, within LRK53_RS03340 at 788.518 kb on + strand, within LRK53_RS03340 at 788.518 kb on + strand, within LRK53_RS03340 at 788.519 kb on - strand, within LRK53_RS03340 at 788.519 kb on - strand, within LRK53_RS03340 at 788.644 kb on + strand, within LRK53_RS03340 at 788.644 kb on + strand, within LRK53_RS03340 at 788.644 kb on + strand, within LRK53_RS03340 at 788.645 kb on - strand, within LRK53_RS03340 at 788.645 kb on - strand, within LRK53_RS03340 at 788.689 kb on + strand at 788.689 kb on + strand at 788.689 kb on + strand at 788.689 kb on + strand at 788.690 kb on - strand at 788.690 kb on - strand at 788.690 kb on - strand at 788.690 kb on - strand at 788.690 kb on - strand at 788.690 kb on - strand at 788.690 kb on - strand at 788.701 kb on + strand at 788.701 kb on + strand at 788.701 kb on + strand at 788.701 kb on + strand at 788.701 kb on + strand at 788.701 kb on + strand at 788.701 kb on + strand at 788.701 kb on + strand at 788.701 kb on + strand at 788.701 kb on + strand at 788.701 kb on + strand at 788.701 kb on + strand at 788.702 kb on - strand at 788.702 kb on - strand at 788.702 kb on - strand at 788.702 kb on - strand at 788.702 kb on - strand at 788.702 kb on - strand at 788.702 kb on - strand at 788.702 kb on - strand at 788.702 kb on - strand at 788.702 kb on - strand at 788.702 kb on - strand at 788.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 1.125 mM remove 785,799 - +0.1 785,799 - -0.1 785,891 + LRK53_RS03330 0.11 -0.1 785,892 - LRK53_RS03330 0.12 -1.1 786,356 + LRK53_RS03330 0.68 -0.1 786,357 - LRK53_RS03330 0.68 -0.1 786,357 - LRK53_RS03330 0.68 -0.6 786,357 - LRK53_RS03330 0.68 +0.9 786,357 - LRK53_RS03330 0.68 -0.1 786,578 + -3.1 786,578 + +0.9 786,578 + -0.2 786,578 + -0.6 786,579 - -0.1 786,579 - -0.2 786,579 - -1.4 786,579 - -1.1 786,579 - -0.1 786,579 - +0.2 786,621 + -1.6 786,621 + -0.1 786,622 - -1.2 786,622 - -0.1 786,622 - -0.6 786,633 + -2.1 786,634 - +0.3 786,713 - -1.9 786,813 + -0.6 786,813 + +0.2 786,813 + -0.1 786,814 - -1.4 787,161 + LRK53_RS03335 0.38 +1.9 787,161 + LRK53_RS03335 0.38 +1.9 787,161 + LRK53_RS03335 0.38 -0.6 787,404 + LRK53_RS03335 0.63 -1.0 787,404 + LRK53_RS03335 0.63 -0.4 787,404 + LRK53_RS03335 0.63 -0.1 787,404 + LRK53_RS03335 0.63 -2.8 787,404 + LRK53_RS03335 0.63 -1.4 787,404 + LRK53_RS03335 0.63 -2.1 787,404 + LRK53_RS03335 0.63 +0.9 787,405 - LRK53_RS03335 0.63 -1.4 787,405 - LRK53_RS03335 0.63 -1.4 787,405 - LRK53_RS03335 0.63 +0.9 787,405 - LRK53_RS03335 0.63 -1.1 787,407 + LRK53_RS03335 0.63 -1.4 787,407 + LRK53_RS03335 0.63 -0.6 787,407 + LRK53_RS03335 0.63 +0.9 787,407 + LRK53_RS03335 0.63 -0.4 787,407 + LRK53_RS03335 0.63 -0.5 787,407 + LRK53_RS03335 0.63 -0.5 787,407 + LRK53_RS03335 0.63 +0.8 787,407 + LRK53_RS03335 0.63 -0.1 787,407 + LRK53_RS03335 0.63 -1.1 787,407 + LRK53_RS03335 0.63 -0.1 787,407 + LRK53_RS03335 0.63 -0.6 787,407 + LRK53_RS03335 0.63 -1.1 787,407 + LRK53_RS03335 0.63 -0.5 787,407 + LRK53_RS03335 0.63 +0.1 787,407 + LRK53_RS03335 0.63 -0.1 787,408 - LRK53_RS03335 0.63 -1.1 787,408 - LRK53_RS03335 0.63 -0.6 787,408 - LRK53_RS03335 0.63 -1.4 787,408 - LRK53_RS03335 0.63 -1.4 787,408 - LRK53_RS03335 0.63 -0.9 787,408 - LRK53_RS03335 0.63 -0.6 787,408 - LRK53_RS03335 0.63 -1.4 787,408 - LRK53_RS03335 0.63 -1.1 787,408 - LRK53_RS03335 0.63 -1.1 787,408 - LRK53_RS03335 0.63 -1.6 787,408 - LRK53_RS03335 0.63 -0.9 787,408 - LRK53_RS03335 0.63 -1.6 787,408 - LRK53_RS03335 0.63 +0.7 787,408 - LRK53_RS03335 0.63 -0.3 787,408 - LRK53_RS03335 0.63 -1.1 787,408 - LRK53_RS03335 0.63 -1.1 787,408 - LRK53_RS03335 0.63 -2.2 787,467 + LRK53_RS03335 0.69 -0.4 787,467 + LRK53_RS03335 0.69 +1.5 787,467 + LRK53_RS03335 0.69 -0.6 787,467 + LRK53_RS03335 0.69 -0.1 787,468 - LRK53_RS03335 0.69 +0.1 787,468 - LRK53_RS03335 0.69 -0.1 787,605 + LRK53_RS03335 0.83 +1.9 787,605 + LRK53_RS03335 0.83 -0.1 787,605 + LRK53_RS03335 0.83 -0.4 787,605 + LRK53_RS03335 0.83 -0.3 787,605 + LRK53_RS03335 0.83 -2.6 787,605 + LRK53_RS03335 0.83 +0.9 787,605 + LRK53_RS03335 0.83 -0.1 787,605 + LRK53_RS03335 0.83 -1.4 787,605 + LRK53_RS03335 0.83 +0.7 787,605 + LRK53_RS03335 0.83 -3.2 787,605 + LRK53_RS03335 0.83 +0.4 787,605 + LRK53_RS03335 0.83 +0.5 787,606 - LRK53_RS03335 0.83 -1.4 787,606 - LRK53_RS03335 0.83 -1.1 787,606 - LRK53_RS03335 0.83 -0.4 787,606 - LRK53_RS03335 0.83 -0.9 787,606 - LRK53_RS03335 0.83 -1.6 787,606 - LRK53_RS03335 0.83 -0.6 787,606 - LRK53_RS03335 0.83 +0.2 787,606 - LRK53_RS03335 0.83 -2.1 787,606 - LRK53_RS03335 0.83 -0.1 787,606 - LRK53_RS03335 0.83 -1.4 787,606 - LRK53_RS03335 0.83 -0.6 787,606 - LRK53_RS03335 0.83 -0.9 787,606 - LRK53_RS03335 0.83 -1.1 787,606 - LRK53_RS03335 0.83 -1.9 787,606 - LRK53_RS03335 0.83 -0.6 787,692 + +0.1 787,693 - -2.2 787,827 + +0.9 787,828 - +0.9 788,296 + LRK53_RS03340 0.42 -0.6 788,296 + LRK53_RS03340 0.42 -0.1 788,297 - LRK53_RS03340 0.42 -2.2 788,297 - LRK53_RS03340 0.42 -0.1 788,297 - LRK53_RS03340 0.42 -1.4 788,437 + LRK53_RS03340 0.61 -0.9 788,437 + LRK53_RS03340 0.61 -0.6 788,438 - LRK53_RS03340 0.61 -1.8 788,438 - LRK53_RS03340 0.61 -0.6 788,438 - LRK53_RS03340 0.61 -1.5 788,438 - LRK53_RS03340 0.61 -1.4 788,438 - LRK53_RS03340 0.61 +0.4 788,438 - LRK53_RS03340 0.61 -1.1 788,438 - LRK53_RS03340 0.61 -1.1 788,438 - LRK53_RS03340 0.61 +1.9 788,486 - LRK53_RS03340 0.67 -1.4 788,518 + LRK53_RS03340 0.71 +0.4 788,518 + LRK53_RS03340 0.71 -0.1 788,519 - LRK53_RS03340 0.72 -1.1 788,519 - LRK53_RS03340 0.72 +0.9 788,644 + LRK53_RS03340 0.88 +0.4 788,644 + LRK53_RS03340 0.88 -0.9 788,644 + LRK53_RS03340 0.88 -1.4 788,645 - LRK53_RS03340 0.88 -2.3 788,645 - LRK53_RS03340 0.88 -1.2 788,689 + -0.9 788,689 + -2.0 788,689 + -1.4 788,689 + -1.2 788,690 - +0.8 788,690 - -0.5 788,690 - -0.1 788,690 - -0.1 788,690 - +2.5 788,690 - -0.3 788,690 - +0.9 788,701 + -0.1 788,701 + -1.6 788,701 + -0.6 788,701 + -1.0 788,701 + -2.1 788,701 + -0.4 788,701 + -0.4 788,701 + -1.4 788,701 + -0.6 788,701 + -1.2 788,701 + -1.4 788,701 + -1.0 788,702 - -2.1 788,702 - -0.3 788,702 - -0.1 788,702 - +1.5 788,702 - -0.4 788,702 - -0.5 788,702 - +0.5 788,702 - -0.4 788,702 - +0.9 788,702 - -1.4 788,702 - -0.1 788,702 - -1.4
Or see this region's nucleotide sequence