Strain Fitness in Escherichia coli ECRC98 around JDDGAC_16100

Experiment: WM_T2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_T2
3,028,511	-	yjdC	JDDGAC_16090	0.69	-0.2
3,028,544	-	yjdC	JDDGAC_16090	0.75	+1.5
3,028,544	-	yjdC	JDDGAC_16090	0.75	+1.2
3,028,752	+				+0.9
3,028,753	-				+1.5
3,028,929	-				+1.6
3,029,033	+				-1.1
3,029,033	+				+0.2
3,029,034	-				-0.1
3,029,034	-				+0.3
3,029,035	+				-0.8
3,029,036	-				-1.3
3,029,036	-				-1.8
3,029,119	-				+1.0
3,029,312	+				-0.3
3,029,312	+				+2.4
3,029,403	-				-0.5
3,029,420	+				+0.5
3,029,422	+				+0.0
3,029,423	-				-0.4
3,029,486	+				+0.4
3,029,525	+				-1.5
3,029,567	+				-1.9
3,029,568	-				-0.6
3,029,568	-				+0.4
3,029,626	+				-0.8
3,029,627	-				-0.3
3,029,627	-				+1.7
3,029,630	+				-0.3
3,029,669	+	cadC	JDDGAC_16100	0.12	+0.5
3,029,670	-	cadC	JDDGAC_16100	0.12	+0.0
3,029,670	-	cadC	JDDGAC_16100	0.12	+0.2
3,029,710	+	cadC	JDDGAC_16100	0.14	-0.7
3,029,711	-	cadC	JDDGAC_16100	0.15	-0.0
3,029,714	+	cadC	JDDGAC_16100	0.15	+0.9
3,029,741	+	cadC	JDDGAC_16100	0.17	-0.6
3,029,742	-	cadC	JDDGAC_16100	0.17	+0.8
3,029,751	+	cadC	JDDGAC_16100	0.17	-0.4
3,029,752	-	cadC	JDDGAC_16100	0.17	-0.7
3,029,759	+	cadC	JDDGAC_16100	0.18	-1.2
3,029,759	+	cadC	JDDGAC_16100	0.18	-0.3
3,029,765	-	cadC	JDDGAC_16100	0.18	+0.3
3,029,785	+	cadC	JDDGAC_16100	0.19	-2.2
3,029,786	-	cadC	JDDGAC_16100	0.19	-0.1
3,029,830	+	cadC	JDDGAC_16100	0.22	+0.1
3,029,831	-	cadC	JDDGAC_16100	0.22	-0.4
3,029,831	-	cadC	JDDGAC_16100	0.22	+1.1
3,029,831	-	cadC	JDDGAC_16100	0.22	+1.9
3,029,853	-	cadC	JDDGAC_16100	0.24	-2.7
3,029,897	+	cadC	JDDGAC_16100	0.27	+0.2
3,029,958	-	cadC	JDDGAC_16100	0.31	-2.9
3,029,992	+	cadC	JDDGAC_16100	0.33	-0.2
3,029,996	+	cadC	JDDGAC_16100	0.33	-0.7
3,029,996	+	cadC	JDDGAC_16100	0.33	+0.6
3,029,997	-	cadC	JDDGAC_16100	0.33	+0.1
3,029,997	-	cadC	JDDGAC_16100	0.33	-2.8
3,029,997	-	cadC	JDDGAC_16100	0.33	-0.2
3,030,032	+	cadC	JDDGAC_16100	0.35	-0.3
3,030,033	-	cadC	JDDGAC_16100	0.35	-2.1
3,030,089	+	cadC	JDDGAC_16100	0.39	+0.6
3,030,090	-	cadC	JDDGAC_16100	0.39	-0.0
3,030,092	+	cadC	JDDGAC_16100	0.39	-0.1
3,030,093	-	cadC	JDDGAC_16100	0.39	-0.0
3,030,098	-	cadC	JDDGAC_16100	0.40	-0.1
3,030,110	+	cadC	JDDGAC_16100	0.40	+0.5
3,030,141	+	cadC	JDDGAC_16100	0.42	+0.2
3,030,180	-	cadC	JDDGAC_16100	0.45	-1.5
3,030,256	+	cadC	JDDGAC_16100	0.50	-2.8
3,030,256	+	cadC	JDDGAC_16100	0.50	+0.6
3,030,261	-	cadC	JDDGAC_16100	0.50	-0.1
3,030,272	+	cadC	JDDGAC_16100	0.51	-1.5
3,030,305	+	cadC	JDDGAC_16100	0.53	+0.6
3,030,306	-	cadC	JDDGAC_16100	0.53	+0.6
3,030,361	-	cadC	JDDGAC_16100	0.57	+1.5
3,030,361	-	cadC	JDDGAC_16100	0.57	-0.9
3,030,361	-	cadC	JDDGAC_16100	0.57	-0.1
3,030,527	-	cadC	JDDGAC_16100	0.68	-1.9
3,030,629	-	cadC	JDDGAC_16100	0.74	-2.1
3,030,702	-	cadC	JDDGAC_16100	0.79	-1.6
3,030,745	-	cadC	JDDGAC_16100	0.82	+0.4
3,030,903	+				+0.1
3,030,904	-				+2.0
3,031,095	+				+1.3
3,031,340	+				-1.1
3,031,341	-				-0.5
3,031,342	+				-0.1
3,031,501	+				-2.0
3,031,522	+				+0.3
3,031,532	-	cadB	JDDGAC_16105	0.11	-0.1
3,031,557	+	cadB	JDDGAC_16105	0.12	-3.1
3,031,557	+	cadB	JDDGAC_16105	0.12	+2.0
3,031,557	+	cadB	JDDGAC_16105	0.12	+1.1
3,031,557	+	cadB	JDDGAC_16105	0.12	-0.7
3,031,558	-	cadB	JDDGAC_16105	0.13	-0.7
3,031,558	-	cadB	JDDGAC_16105	0.13	-0.7
3,031,560	-	cadB	JDDGAC_16105	0.13	+2.4
3,031,655	+	cadB	JDDGAC_16105	0.20	+1.5
3,031,735	-	cadB	JDDGAC_16105	0.26	+0.1
3,031,765	+	cadB	JDDGAC_16105	0.28	-1.0
3,031,771	+	cadB	JDDGAC_16105	0.28	+1.1
3,031,856	-	cadB	JDDGAC_16105	0.35	-0.5
3,031,876	+	cadB	JDDGAC_16105	0.36	-0.7
3,031,910	+	cadB	JDDGAC_16105	0.39	+0.1
3,031,918	+	cadB	JDDGAC_16105	0.39	+0.8
3,032,013	+	cadB	JDDGAC_16105	0.47	-1.5
3,032,017	+	cadB	JDDGAC_16105	0.47	+1.5