Experiment: WM_T2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydiK and ydiJ are separated by 388 nucleotides ydiJ and menI overlap by 4 nucleotides menI and ydiH are separated by 99 nucleotides
JDDGAC_01800: ydiK - AI-2E family transporter YdiK, at 319,342 to 320,454
ydiK
JDDGAC_01805: ydiJ - Uncharacterized protein YdiJ, at 320,843 to 323,899
ydiJ
JDDGAC_01810: menI - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 323,896 to 324,306
menI
JDDGAC_01815: ydiH - Uncharacterized protein YdiH, at 324,406 to 324,594
ydiH
Position (kb) 320
321
322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 319.923 kb on - strand, within ydiK at 320.022 kb on - strand, within ydiK at 320.022 kb on - strand, within ydiK at 320.113 kb on - strand, within ydiK at 320.163 kb on + strand, within ydiK at 320.164 kb on - strand, within ydiK at 320.221 kb on - strand, within ydiK at 320.296 kb on + strand, within ydiK at 320.297 kb on - strand, within ydiK at 320.297 kb on - strand, within ydiK at 320.449 kb on + strand at 320.455 kb on - strand at 320.455 kb on - strand at 320.568 kb on + strand at 320.601 kb on + strand at 320.654 kb on + strand at 320.685 kb on - strand at 320.685 kb on - strand at 320.685 kb on - strand at 320.688 kb on + strand at 320.696 kb on + strand at 320.696 kb on + strand at 320.752 kb on - strand at 320.752 kb on - strand at 320.804 kb on - strand at 320.841 kb on + strand at 320.945 kb on + strand at 320.946 kb on - strand at 320.946 kb on - strand at 320.981 kb on - strand at 320.981 kb on - strand at 320.985 kb on - strand at 320.985 kb on - strand at 321.009 kb on + strand at 321.010 kb on - strand at 321.137 kb on - strand at 321.139 kb on + strand at 321.148 kb on + strand at 321.148 kb on + strand at 321.149 kb on - strand, within ydiJ at 321.149 kb on - strand, within ydiJ at 321.160 kb on + strand, within ydiJ at 321.242 kb on + strand, within ydiJ at 321.319 kb on + strand, within ydiJ at 321.455 kb on - strand, within ydiJ at 321.522 kb on + strand, within ydiJ at 321.688 kb on + strand, within ydiJ at 321.716 kb on + strand, within ydiJ at 321.742 kb on + strand, within ydiJ at 322.033 kb on + strand, within ydiJ at 322.033 kb on + strand, within ydiJ at 322.034 kb on - strand, within ydiJ at 322.148 kb on - strand, within ydiJ at 322.185 kb on + strand, within ydiJ at 322.190 kb on + strand, within ydiJ at 322.191 kb on - strand, within ydiJ at 322.195 kb on + strand, within ydiJ at 322.246 kb on + strand, within ydiJ at 322.796 kb on - strand, within ydiJ at 322.811 kb on - strand, within ydiJ at 322.941 kb on - strand, within ydiJ at 323.240 kb on + strand, within ydiJ at 323.240 kb on + strand, within ydiJ at 323.304 kb on + strand, within ydiJ at 323.401 kb on + strand, within ydiJ at 323.468 kb on + strand, within ydiJ at 323.469 kb on - strand, within ydiJ at 323.470 kb on + strand, within ydiJ at 323.470 kb on + strand, within ydiJ at 323.503 kb on + strand, within ydiJ at 323.711 kb on + strand at 323.754 kb on - strand at 323.761 kb on - strand at 323.890 kb on + strand at 323.893 kb on + strand at 323.985 kb on + strand, within menI at 323.985 kb on + strand, within menI at 323.985 kb on + strand, within menI at 324.053 kb on + strand, within menI at 324.053 kb on + strand, within menI at 324.054 kb on - strand, within menI at 324.054 kb on - strand, within menI at 324.107 kb on - strand, within menI at 324.110 kb on + strand, within menI at 324.110 kb on + strand, within menI at 324.111 kb on - strand, within menI at 324.111 kb on - strand, within menI at 324.197 kb on + strand, within menI at 324.370 kb on + strand at 324.371 kb on - strand at 324.405 kb on + strand at 324.405 kb on + strand at 324.406 kb on - strand at 324.406 kb on - strand at 324.406 kb on - strand at 324.506 kb on + strand, within ydiH at 324.531 kb on + strand, within ydiH at 324.551 kb on + strand, within ydiH at 324.604 kb on - strand at 324.665 kb on - strand at 324.678 kb on + strand at 324.799 kb on - strand at 324.799 kb on - strand at 324.846 kb on - strand at 324.885 kb on - strand at 324.885 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_T2 remove 319,923 - ydiK JDDGAC_01800 0.52 +1.4 320,022 - ydiK JDDGAC_01800 0.61 +0.9 320,022 - ydiK JDDGAC_01800 0.61 -0.0 320,113 - ydiK JDDGAC_01800 0.69 +0.5 320,163 + ydiK JDDGAC_01800 0.74 +0.4 320,164 - ydiK JDDGAC_01800 0.74 +0.4 320,221 - ydiK JDDGAC_01800 0.79 +1.5 320,296 + ydiK JDDGAC_01800 0.86 -1.7 320,297 - ydiK JDDGAC_01800 0.86 -0.2 320,297 - ydiK JDDGAC_01800 0.86 -0.2 320,449 + +1.4 320,455 - +0.5 320,455 - -1.9 320,568 + +1.6 320,601 + -1.1 320,654 + -0.7 320,685 - -0.3 320,685 - -2.9 320,685 - -2.4 320,688 + +2.4 320,696 + +2.7 320,696 + +0.0 320,752 - -0.6 320,752 - -2.0 320,804 - -0.7 320,841 + -0.5 320,945 + -0.2 320,946 - -0.1 320,946 - -0.1 320,981 - -1.3 320,981 - -0.8 320,985 - -1.0 320,985 - +2.6 321,009 + -0.6 321,010 - -0.8 321,137 - -0.8 321,139 + -1.2 321,148 + -2.5 321,148 + -1.3 321,149 - ydiJ JDDGAC_01805 0.10 -1.0 321,149 - ydiJ JDDGAC_01805 0.10 -3.0 321,160 + ydiJ JDDGAC_01805 0.10 -1.1 321,242 + ydiJ JDDGAC_01805 0.13 +1.0 321,319 + ydiJ JDDGAC_01805 0.16 -1.8 321,455 - ydiJ JDDGAC_01805 0.20 -0.1 321,522 + ydiJ JDDGAC_01805 0.22 -0.9 321,688 + ydiJ JDDGAC_01805 0.28 +1.4 321,716 + ydiJ JDDGAC_01805 0.29 -1.6 321,742 + ydiJ JDDGAC_01805 0.29 -0.7 322,033 + ydiJ JDDGAC_01805 0.39 -0.3 322,033 + ydiJ JDDGAC_01805 0.39 +0.4 322,034 - ydiJ JDDGAC_01805 0.39 -2.6 322,148 - ydiJ JDDGAC_01805 0.43 +0.4 322,185 + ydiJ JDDGAC_01805 0.44 -1.1 322,190 + ydiJ JDDGAC_01805 0.44 -0.2 322,191 - ydiJ JDDGAC_01805 0.44 +0.5 322,195 + ydiJ JDDGAC_01805 0.44 -1.1 322,246 + ydiJ JDDGAC_01805 0.46 +0.2 322,796 - ydiJ JDDGAC_01805 0.64 -2.8 322,811 - ydiJ JDDGAC_01805 0.64 -2.2 322,941 - ydiJ JDDGAC_01805 0.69 -1.1 323,240 + ydiJ JDDGAC_01805 0.78 -1.2 323,240 + ydiJ JDDGAC_01805 0.78 -1.0 323,304 + ydiJ JDDGAC_01805 0.81 -1.2 323,401 + ydiJ JDDGAC_01805 0.84 -1.1 323,468 + ydiJ JDDGAC_01805 0.86 -1.2 323,469 - ydiJ JDDGAC_01805 0.86 +0.9 323,470 + ydiJ JDDGAC_01805 0.86 +0.2 323,470 + ydiJ JDDGAC_01805 0.86 -1.6 323,503 + ydiJ JDDGAC_01805 0.87 -0.6 323,711 + +1.2 323,754 - -1.1 323,761 - -3.7 323,890 + -1.0 323,893 + +0.2 323,985 + menI JDDGAC_01810 0.22 -0.1 323,985 + menI JDDGAC_01810 0.22 -0.8 323,985 + menI JDDGAC_01810 0.22 -1.0 324,053 + menI JDDGAC_01810 0.38 +0.1 324,053 + menI JDDGAC_01810 0.38 +0.5 324,054 - menI JDDGAC_01810 0.38 -2.2 324,054 - menI JDDGAC_01810 0.38 +0.2 324,107 - menI JDDGAC_01810 0.51 +3.8 324,110 + menI JDDGAC_01810 0.52 -0.9 324,110 + menI JDDGAC_01810 0.52 -0.7 324,111 - menI JDDGAC_01810 0.52 +0.3 324,111 - menI JDDGAC_01810 0.52 +0.5 324,197 + menI JDDGAC_01810 0.73 -1.4 324,370 + +2.1 324,371 - -0.8 324,405 + -0.9 324,405 + -2.0 324,406 - +2.4 324,406 - +0.6 324,406 - -1.0 324,506 + ydiH JDDGAC_01815 0.53 +0.3 324,531 + ydiH JDDGAC_01815 0.66 -0.1 324,551 + ydiH JDDGAC_01815 0.77 +2.4 324,604 - -0.2 324,665 - +0.4 324,678 + -0.0 324,799 - +0.8 324,799 - -1.6 324,846 - -0.4 324,885 - -0.7 324,885 - +1.4
Or see this region's nucleotide sequence