Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14295

Experiment: R2A_PIPES with Aluminum chloride 1.125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14290 and LRK53_RS14295 are separated by 106 nucleotidesLRK53_RS14295 and LRK53_RS14300 are separated by 52 nucleotides LRK53_RS14290: LRK53_RS14290 - penicillin acylase family protein, at 3,133,224 to 3,134,300 _RS14290 LRK53_RS14295: LRK53_RS14295 - NAD(P)/FAD-dependent oxidoreductase, at 3,134,407 to 3,135,516 _RS14295 LRK53_RS14300: LRK53_RS14300 - FAD:protein FMN transferase, at 3,135,569 to 3,136,636 _RS14300 Position (kb) 3134 3135 3136Strain fitness (log2 ratio) -2 -1 0 1 2at 3134.164 kb on + strand, within LRK53_RS14290at 3134.164 kb on + strand, within LRK53_RS14290at 3134.164 kb on + strand, within LRK53_RS14290at 3134.165 kb on - strand, within LRK53_RS14290at 3134.165 kb on - strand, within LRK53_RS14290at 3134.573 kb on - strand, within LRK53_RS14295at 3134.590 kb on + strand, within LRK53_RS14295at 3134.591 kb on - strand, within LRK53_RS14295at 3134.591 kb on - strand, within LRK53_RS14295at 3134.857 kb on + strand, within LRK53_RS14295at 3134.858 kb on - strand, within LRK53_RS14295at 3134.858 kb on - strand, within LRK53_RS14295at 3134.858 kb on - strand, within LRK53_RS14295at 3134.858 kb on - strand, within LRK53_RS14295at 3134.858 kb on - strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.300 kb on + strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.301 kb on - strand, within LRK53_RS14295at 3135.304 kb on + strand, within LRK53_RS14295at 3135.304 kb on + strand, within LRK53_RS14295at 3135.305 kb on - strand, within LRK53_RS14295at 3135.305 kb on - strand, within LRK53_RS14295at 3135.409 kb on + strandat 3135.409 kb on + strandat 3135.409 kb on + strandat 3135.410 kb on - strandat 3135.410 kb on - strandat 3135.410 kb on - strandat 3135.410 kb on - strandat 3135.410 kb on - strandat 3135.410 kb on - strandat 3135.897 kb on + strand, within LRK53_RS14300at 3135.898 kb on - strand, within LRK53_RS14300at 3135.996 kb on - strand, within LRK53_RS14300at 3135.996 kb on - strand, within LRK53_RS14300at 3135.996 kb on - strand, within LRK53_RS14300at 3136.208 kb on + strand, within LRK53_RS14300at 3136.362 kb on - strand, within LRK53_RS14300at 3136.362 kb on - strand, within LRK53_RS14300at 3136.362 kb on - strand, within LRK53_RS14300at 3136.362 kb on - strand, within LRK53_RS14300at 3136.362 kb on - strand, within LRK53_RS14300at 3136.362 kb on - strand, within LRK53_RS14300at 3136.362 kb on - strand, within LRK53_RS14300at 3136.436 kb on + strand, within LRK53_RS14300at 3136.436 kb on + strand, within LRK53_RS14300at 3136.436 kb on + strand, within LRK53_RS14300at 3136.437 kb on - strand, within LRK53_RS14300at 3136.437 kb on - strand, within LRK53_RS14300

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 1.125 mM
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3,134,164 + LRK53_RS14290 0.87 -0.9
3,134,164 + LRK53_RS14290 0.87 -0.4
3,134,164 + LRK53_RS14290 0.87 +0.4
3,134,165 - LRK53_RS14290 0.87 -1.6
3,134,165 - LRK53_RS14290 0.87 -0.6
3,134,573 - LRK53_RS14295 0.15 +0.2
3,134,590 + LRK53_RS14295 0.16 -1.1
3,134,591 - LRK53_RS14295 0.17 -1.6
3,134,591 - LRK53_RS14295 0.17 -0.1
3,134,857 + LRK53_RS14295 0.41 -0.5
3,134,858 - LRK53_RS14295 0.41 -0.3
3,134,858 - LRK53_RS14295 0.41 -1.1
3,134,858 - LRK53_RS14295 0.41 -0.6
3,134,858 - LRK53_RS14295 0.41 +0.3
3,134,858 - LRK53_RS14295 0.41 +1.4
3,135,300 + LRK53_RS14295 0.80 -0.7
3,135,300 + LRK53_RS14295 0.80 +0.9
3,135,300 + LRK53_RS14295 0.80 -0.6
3,135,300 + LRK53_RS14295 0.80 -1.6
3,135,300 + LRK53_RS14295 0.80 +0.2
3,135,300 + LRK53_RS14295 0.80 -1.0
3,135,300 + LRK53_RS14295 0.80 -1.3
3,135,300 + LRK53_RS14295 0.80 -1.1
3,135,300 + LRK53_RS14295 0.80 -1.6
3,135,300 + LRK53_RS14295 0.80 -1.4
3,135,300 + LRK53_RS14295 0.80 +0.9
3,135,300 + LRK53_RS14295 0.80 -1.9
3,135,300 + LRK53_RS14295 0.80 -1.1
3,135,300 + LRK53_RS14295 0.80 -0.1
3,135,300 + LRK53_RS14295 0.80 -0.6
3,135,300 + LRK53_RS14295 0.80 -1.4
3,135,300 + LRK53_RS14295 0.80 -0.6
3,135,300 + LRK53_RS14295 0.80 +0.9
3,135,300 + LRK53_RS14295 0.80 -2.1
3,135,300 + LRK53_RS14295 0.80 -1.4
3,135,300 + LRK53_RS14295 0.80 -0.4
3,135,300 + LRK53_RS14295 0.80 +0.7
3,135,301 - LRK53_RS14295 0.81 -2.5
3,135,301 - LRK53_RS14295 0.81 -0.1
3,135,301 - LRK53_RS14295 0.81 -0.5
3,135,301 - LRK53_RS14295 0.81 -1.1
3,135,301 - LRK53_RS14295 0.81 +0.2
3,135,301 - LRK53_RS14295 0.81 +0.4
3,135,301 - LRK53_RS14295 0.81 -0.4
3,135,301 - LRK53_RS14295 0.81 -0.4
3,135,301 - LRK53_RS14295 0.81 +0.9
3,135,301 - LRK53_RS14295 0.81 +0.9
3,135,301 - LRK53_RS14295 0.81 -0.1
3,135,301 - LRK53_RS14295 0.81 -1.6
3,135,301 - LRK53_RS14295 0.81 -2.1
3,135,301 - LRK53_RS14295 0.81 +1.5
3,135,301 - LRK53_RS14295 0.81 +0.1
3,135,301 - LRK53_RS14295 0.81 -1.4
3,135,301 - LRK53_RS14295 0.81 +0.4
3,135,301 - LRK53_RS14295 0.81 -0.3
3,135,301 - LRK53_RS14295 0.81 -1.4
3,135,301 - LRK53_RS14295 0.81 -0.1
3,135,301 - LRK53_RS14295 0.81 +1.9
3,135,301 - LRK53_RS14295 0.81 -1.9
3,135,301 - LRK53_RS14295 0.81 +0.9
3,135,301 - LRK53_RS14295 0.81 -0.1
3,135,301 - LRK53_RS14295 0.81 -0.4
3,135,301 - LRK53_RS14295 0.81 -0.9
3,135,301 - LRK53_RS14295 0.81 -1.1
3,135,301 - LRK53_RS14295 0.81 -2.2
3,135,301 - LRK53_RS14295 0.81 -0.1
3,135,301 - LRK53_RS14295 0.81 +0.9
3,135,301 - LRK53_RS14295 0.81 -0.1
3,135,301 - LRK53_RS14295 0.81 -0.6
3,135,301 - LRK53_RS14295 0.81 -0.6
3,135,304 + LRK53_RS14295 0.81 +1.5
3,135,304 + LRK53_RS14295 0.81 -0.4
3,135,305 - LRK53_RS14295 0.81 -0.1
3,135,305 - LRK53_RS14295 0.81 +0.1
3,135,409 + -0.6
3,135,409 + -1.6
3,135,409 + +1.9
3,135,410 - +2.5
3,135,410 - -0.3
3,135,410 - -1.0
3,135,410 - -1.4
3,135,410 - -0.1
3,135,410 - -1.1
3,135,897 + LRK53_RS14300 0.31 +0.9
3,135,898 - LRK53_RS14300 0.31 -1.1
3,135,996 - LRK53_RS14300 0.40 +1.5
3,135,996 - LRK53_RS14300 0.40 +0.2
3,135,996 - LRK53_RS14300 0.40 -0.5
3,136,208 + LRK53_RS14300 0.60 -0.1
3,136,362 - LRK53_RS14300 0.74 -1.1
3,136,362 - LRK53_RS14300 0.74 +0.9
3,136,362 - LRK53_RS14300 0.74 -0.1
3,136,362 - LRK53_RS14300 0.74 -1.1
3,136,362 - LRK53_RS14300 0.74 -0.5
3,136,362 - LRK53_RS14300 0.74 -0.6
3,136,362 - LRK53_RS14300 0.74 -2.1
3,136,436 + LRK53_RS14300 0.81 -0.1
3,136,436 + LRK53_RS14300 0.81 -0.1
3,136,436 + LRK53_RS14300 0.81 -0.7
3,136,437 - LRK53_RS14300 0.81 +0.4
3,136,437 - LRK53_RS14300 0.81 -0.4

Or see this region's nucleotide sequence