Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04160

Experiment: R2A_PIPES with Aluminum chloride 0.5625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04150 and LRK53_RS04155 are separated by 97 nucleotidesLRK53_RS04155 and LRK53_RS04160 are separated by 12 nucleotidesLRK53_RS04160 and LRK53_RS04165 are separated by 121 nucleotidesLRK53_RS04165 and LRK53_RS04170 are separated by 70 nucleotides LRK53_RS04150: LRK53_RS04150 - DUF2884 family protein, at 969,993 to 970,745 _RS04150 LRK53_RS04155: LRK53_RS04155 - DUF2383 domain-containing protein, at 970,843 to 971,283 _RS04155 LRK53_RS04160: LRK53_RS04160 - DUF924 domain-containing protein, at 971,296 to 971,871 _RS04160 LRK53_RS04165: LRK53_RS04165 - DUF2845 domain-containing protein, at 971,993 to 972,301 _RS04165 LRK53_RS04170: LRK53_RS04170 - mechanosensitive ion channel, at 972,372 to 973,238 _RS04170 Position (kb) 971 972Strain fitness (log2 ratio) -2 -1 0 1 2at 970.409 kb on + strand, within LRK53_RS04150at 970.409 kb on + strand, within LRK53_RS04150at 970.409 kb on + strand, within LRK53_RS04150at 970.409 kb on + strand, within LRK53_RS04150at 970.409 kb on + strand, within LRK53_RS04150at 970.409 kb on + strand, within LRK53_RS04150at 970.410 kb on - strand, within LRK53_RS04150at 970.410 kb on - strand, within LRK53_RS04150at 970.793 kb on + strandat 970.793 kb on + strandat 970.793 kb on + strandat 970.793 kb on + strandat 970.793 kb on + strandat 970.794 kb on - strandat 970.794 kb on - strandat 970.794 kb on - strandat 970.860 kb on + strandat 970.860 kb on + strandat 970.860 kb on + strandat 970.860 kb on + strandat 970.860 kb on + strandat 970.860 kb on + strandat 970.860 kb on + strandat 970.860 kb on + strandat 970.860 kb on + strandat 970.860 kb on + strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 970.861 kb on - strandat 971.063 kb on + strand, within LRK53_RS04155at 971.063 kb on + strand, within LRK53_RS04155at 971.064 kb on - strand, within LRK53_RS04155at 971.278 kb on + strandat 971.278 kb on + strandat 971.384 kb on + strand, within LRK53_RS04160at 971.384 kb on + strand, within LRK53_RS04160at 971.384 kb on + strand, within LRK53_RS04160at 971.384 kb on + strand, within LRK53_RS04160at 971.384 kb on + strand, within LRK53_RS04160at 971.384 kb on + strand, within LRK53_RS04160at 971.385 kb on - strand, within LRK53_RS04160at 971.385 kb on - strand, within LRK53_RS04160at 971.385 kb on - strand, within LRK53_RS04160at 971.385 kb on - strand, within LRK53_RS04160at 971.385 kb on - strand, within LRK53_RS04160at 971.385 kb on - strand, within LRK53_RS04160at 971.385 kb on - strand, within LRK53_RS04160at 971.385 kb on - strand, within LRK53_RS04160at 971.512 kb on + strand, within LRK53_RS04160at 971.512 kb on + strand, within LRK53_RS04160at 971.626 kb on + strand, within LRK53_RS04160at 971.626 kb on + strand, within LRK53_RS04160at 971.626 kb on + strand, within LRK53_RS04160at 971.627 kb on - strand, within LRK53_RS04160at 971.627 kb on - strand, within LRK53_RS04160at 971.627 kb on - strand, within LRK53_RS04160at 971.627 kb on - strand, within LRK53_RS04160at 971.627 kb on - strand, within LRK53_RS04160at 971.737 kb on + strand, within LRK53_RS04160at 971.737 kb on + strand, within LRK53_RS04160at 971.737 kb on + strand, within LRK53_RS04160at 971.737 kb on + strand, within LRK53_RS04160at 971.737 kb on + strand, within LRK53_RS04160at 971.737 kb on + strand, within LRK53_RS04160at 971.737 kb on + strand, within LRK53_RS04160at 971.737 kb on + strand, within LRK53_RS04160at 971.738 kb on - strand, within LRK53_RS04160at 971.738 kb on - strand, within LRK53_RS04160at 971.738 kb on - strand, within LRK53_RS04160at 971.746 kb on + strand, within LRK53_RS04160at 971.746 kb on + strand, within LRK53_RS04160at 971.746 kb on + strand, within LRK53_RS04160at 971.746 kb on + strand, within LRK53_RS04160at 971.746 kb on + strand, within LRK53_RS04160at 971.747 kb on - strand, within LRK53_RS04160at 971.747 kb on - strand, within LRK53_RS04160at 971.747 kb on - strand, within LRK53_RS04160at 971.747 kb on - strand, within LRK53_RS04160at 971.747 kb on - strand, within LRK53_RS04160at 971.747 kb on - strand, within LRK53_RS04160at 971.747 kb on - strand, within LRK53_RS04160at 971.747 kb on - strand, within LRK53_RS04160at 971.747 kb on - strand, within LRK53_RS04160at 971.842 kb on + strandat 971.842 kb on + strandat 971.842 kb on + strandat 971.842 kb on + strandat 971.842 kb on + strandat 971.842 kb on + strandat 971.842 kb on + strandat 971.842 kb on + strandat 971.842 kb on + strandat 971.842 kb on + strandat 971.843 kb on - strandat 971.843 kb on - strandat 971.902 kb on - strandat 972.338 kb on + strandat 972.338 kb on + strandat 972.338 kb on + strandat 972.433 kb on - strandat 972.594 kb on + strand, within LRK53_RS04170at 972.594 kb on + strand, within LRK53_RS04170at 972.594 kb on + strand, within LRK53_RS04170at 972.594 kb on + strand, within LRK53_RS04170at 972.594 kb on + strand, within LRK53_RS04170at 972.595 kb on - strand, within LRK53_RS04170at 972.595 kb on - strand, within LRK53_RS04170at 972.595 kb on - strand, within LRK53_RS04170at 972.777 kb on + strand, within LRK53_RS04170at 972.777 kb on + strand, within LRK53_RS04170at 972.778 kb on - strand, within LRK53_RS04170at 972.778 kb on - strand, within LRK53_RS04170at 972.778 kb on - strand, within LRK53_RS04170

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.5625 mM
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970,409 + LRK53_RS04150 0.55 -1.0
970,409 + LRK53_RS04150 0.55 -1.0
970,409 + LRK53_RS04150 0.55 -0.4
970,409 + LRK53_RS04150 0.55 -0.5
970,409 + LRK53_RS04150 0.55 +0.2
970,409 + LRK53_RS04150 0.55 -1.3
970,410 - LRK53_RS04150 0.55 -0.2
970,410 - LRK53_RS04150 0.55 -1.2
970,793 + -1.8
970,793 + -1.0
970,793 + -0.5
970,793 + +2.0
970,793 + +0.8
970,794 - -0.0
970,794 - +0.7
970,794 - +1.0
970,860 + -0.0
970,860 + -0.0
970,860 + +1.0
970,860 + -0.0
970,860 + -0.2
970,860 + -0.6
970,860 + -0.6
970,860 + -0.6
970,860 + -0.6
970,860 + -0.4
970,861 - -1.0
970,861 - -1.2
970,861 - +1.0
970,861 - +1.0
970,861 - -1.5
970,861 - -1.7
970,861 - -1.3
970,861 - +0.4
970,861 - +2.0
970,861 - -1.5
970,861 - -1.8
970,861 - -1.0
970,861 - -1.3
970,861 - -0.2
971,063 + LRK53_RS04155 0.50 -1.6
971,063 + LRK53_RS04155 0.50 -1.0
971,064 - LRK53_RS04155 0.50 -1.8
971,278 + -0.5
971,278 + -1.6
971,384 + LRK53_RS04160 0.15 -0.6
971,384 + LRK53_RS04160 0.15 +0.2
971,384 + LRK53_RS04160 0.15 -0.3
971,384 + LRK53_RS04160 0.15 -0.4
971,384 + LRK53_RS04160 0.15 -0.6
971,384 + LRK53_RS04160 0.15 +0.4
971,385 - LRK53_RS04160 0.15 +1.6
971,385 - LRK53_RS04160 0.15 -1.8
971,385 - LRK53_RS04160 0.15 +1.0
971,385 - LRK53_RS04160 0.15 -0.9
971,385 - LRK53_RS04160 0.15 -0.6
971,385 - LRK53_RS04160 0.15 -0.3
971,385 - LRK53_RS04160 0.15 -2.0
971,385 - LRK53_RS04160 0.15 +1.0
971,512 + LRK53_RS04160 0.38 -1.0
971,512 + LRK53_RS04160 0.38 -0.0
971,626 + LRK53_RS04160 0.57 -1.5
971,626 + LRK53_RS04160 0.57 +1.0
971,626 + LRK53_RS04160 0.57 +0.4
971,627 - LRK53_RS04160 0.57 +2.3
971,627 - LRK53_RS04160 0.57 -0.3
971,627 - LRK53_RS04160 0.57 -0.7
971,627 - LRK53_RS04160 0.57 -0.0
971,627 - LRK53_RS04160 0.57 +2.0
971,737 + LRK53_RS04160 0.77 +0.6
971,737 + LRK53_RS04160 0.77 +0.4
971,737 + LRK53_RS04160 0.77 -0.0
971,737 + LRK53_RS04160 0.77 +1.4
971,737 + LRK53_RS04160 0.77 -0.0
971,737 + LRK53_RS04160 0.77 -0.7
971,737 + LRK53_RS04160 0.77 -0.0
971,737 + LRK53_RS04160 0.77 -1.0
971,738 - LRK53_RS04160 0.77 -0.5
971,738 - LRK53_RS04160 0.77 -0.6
971,738 - LRK53_RS04160 0.77 -0.5
971,746 + LRK53_RS04160 0.78 +1.0
971,746 + LRK53_RS04160 0.78 -1.0
971,746 + LRK53_RS04160 0.78 +0.2
971,746 + LRK53_RS04160 0.78 +0.7
971,746 + LRK53_RS04160 0.78 +1.0
971,747 - LRK53_RS04160 0.78 -0.0
971,747 - LRK53_RS04160 0.78 -0.3
971,747 - LRK53_RS04160 0.78 -0.3
971,747 - LRK53_RS04160 0.78 -1.0
971,747 - LRK53_RS04160 0.78 +0.0
971,747 - LRK53_RS04160 0.78 +0.4
971,747 - LRK53_RS04160 0.78 +1.0
971,747 - LRK53_RS04160 0.78 -0.6
971,747 - LRK53_RS04160 0.78 -0.0
971,842 + +1.4
971,842 + -1.6
971,842 + -1.0
971,842 + +1.0
971,842 + -0.2
971,842 + -0.0
971,842 + +0.2
971,842 + -1.3
971,842 + -1.6
971,842 + -0.4
971,843 - -0.6
971,843 - -0.0
971,902 - -0.8
972,338 + -0.4
972,338 + +0.6
972,338 + -2.6
972,433 - -2.4
972,594 + LRK53_RS04170 0.26 -0.5
972,594 + LRK53_RS04170 0.26 -0.0
972,594 + LRK53_RS04170 0.26 -0.9
972,594 + LRK53_RS04170 0.26 +0.2
972,594 + LRK53_RS04170 0.26 +1.4
972,595 - LRK53_RS04170 0.26 +0.1
972,595 - LRK53_RS04170 0.26 -0.7
972,595 - LRK53_RS04170 0.26 +0.1
972,777 + LRK53_RS04170 0.47 -0.0
972,777 + LRK53_RS04170 0.47 -0.0
972,778 - LRK53_RS04170 0.47 +1.4
972,778 - LRK53_RS04170 0.47 -1.0
972,778 - LRK53_RS04170 0.47 +1.0

Or see this region's nucleotide sequence