Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20565

Experiment: R2A with 3-octanone 15.9309 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS20560 and ABIE40_RS20565 are separated by 311 nucleotidesABIE40_RS20565 and ABIE40_RS20570 are separated by 17 nucleotides ABIE40_RS20560: ABIE40_RS20560 - SDR family oxidoreductase, at 217,265 to 217,999 _RS20560 ABIE40_RS20565: ABIE40_RS20565 - hypothetical protein, at 218,311 to 218,640 _RS20565 ABIE40_RS20570: ABIE40_RS20570 - hydantoinase B/oxoprolinase family protein, at 218,658 to 222,278 _RS20570 Position (kb) 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 217.311 kb on + strandat 217.311 kb on + strandat 217.311 kb on + strandat 217.311 kb on + strandat 217.311 kb on + strandat 217.312 kb on - strandat 217.312 kb on - strandat 217.312 kb on - strandat 217.413 kb on + strand, within ABIE40_RS20560at 217.503 kb on + strand, within ABIE40_RS20560at 217.571 kb on - strand, within ABIE40_RS20560at 218.027 kb on - strandat 218.186 kb on - strandat 218.187 kb on + strandat 218.187 kb on + strandat 218.188 kb on - strandat 218.188 kb on - strandat 218.188 kb on - strandat 218.188 kb on - strandat 218.188 kb on - strandat 218.192 kb on + strandat 218.193 kb on - strandat 218.242 kb on - strandat 218.379 kb on + strand, within ABIE40_RS20565at 218.425 kb on + strand, within ABIE40_RS20565at 218.479 kb on + strand, within ABIE40_RS20565at 218.479 kb on + strand, within ABIE40_RS20565at 218.479 kb on + strand, within ABIE40_RS20565at 218.479 kb on + strand, within ABIE40_RS20565at 218.480 kb on - strand, within ABIE40_RS20565at 218.480 kb on - strand, within ABIE40_RS20565at 218.480 kb on - strand, within ABIE40_RS20565at 218.480 kb on - strand, within ABIE40_RS20565at 218.522 kb on + strand, within ABIE40_RS20565at 218.522 kb on + strand, within ABIE40_RS20565at 218.522 kb on + strand, within ABIE40_RS20565at 218.523 kb on - strand, within ABIE40_RS20565at 218.523 kb on - strand, within ABIE40_RS20565at 218.523 kb on - strand, within ABIE40_RS20565at 218.523 kb on - strand, within ABIE40_RS20565at 218.523 kb on - strand, within ABIE40_RS20565at 218.527 kb on + strand, within ABIE40_RS20565at 218.527 kb on + strand, within ABIE40_RS20565at 218.528 kb on - strand, within ABIE40_RS20565at 218.528 kb on - strand, within ABIE40_RS20565at 218.528 kb on - strand, within ABIE40_RS20565at 218.528 kb on - strand, within ABIE40_RS20565at 218.582 kb on - strand, within ABIE40_RS20565at 218.582 kb on - strand, within ABIE40_RS20565at 218.582 kb on - strand, within ABIE40_RS20565at 218.582 kb on - strand, within ABIE40_RS20565at 218.583 kb on + strand, within ABIE40_RS20565at 218.583 kb on + strand, within ABIE40_RS20565at 218.584 kb on - strand, within ABIE40_RS20565at 219.079 kb on + strand, within ABIE40_RS20570at 219.079 kb on + strand, within ABIE40_RS20570at 219.082 kb on + strand, within ABIE40_RS20570at 219.083 kb on - strand, within ABIE40_RS20570at 219.083 kb on - strand, within ABIE40_RS20570at 219.088 kb on + strand, within ABIE40_RS20570at 219.290 kb on + strand, within ABIE40_RS20570at 219.290 kb on + strand, within ABIE40_RS20570at 219.291 kb on - strand, within ABIE40_RS20570at 219.291 kb on - strand, within ABIE40_RS20570at 219.319 kb on + strand, within ABIE40_RS20570at 219.320 kb on - strand, within ABIE40_RS20570at 219.320 kb on - strand, within ABIE40_RS20570at 219.467 kb on - strand, within ABIE40_RS20570at 219.467 kb on - strand, within ABIE40_RS20570at 219.542 kb on + strand, within ABIE40_RS20570at 219.542 kb on + strand, within ABIE40_RS20570at 219.542 kb on + strand, within ABIE40_RS20570at 219.542 kb on + strand, within ABIE40_RS20570at 219.543 kb on - strand, within ABIE40_RS20570at 219.543 kb on - strand, within ABIE40_RS20570at 219.543 kb on - strand, within ABIE40_RS20570at 219.543 kb on - strand, within ABIE40_RS20570at 219.544 kb on + strand, within ABIE40_RS20570at 219.544 kb on + strand, within ABIE40_RS20570at 219.544 kb on + strand, within ABIE40_RS20570at 219.544 kb on + strand, within ABIE40_RS20570at 219.544 kb on + strand, within ABIE40_RS20570at 219.545 kb on - strand, within ABIE40_RS20570

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 15.9309 mM
remove
217,311 + -1.2
217,311 + +0.1
217,311 + +0.4
217,311 + -0.3
217,311 + -0.4
217,312 - +0.8
217,312 - -0.5
217,312 - -1.9
217,413 + ABIE40_RS20560 0.20 +0.4
217,503 + ABIE40_RS20560 0.32 -1.0
217,571 - ABIE40_RS20560 0.42 +0.4
218,027 - +0.2
218,186 - -0.4
218,187 + +0.2
218,187 + +1.0
218,188 - +0.1
218,188 - -0.8
218,188 - -2.4
218,188 - -0.6
218,188 - +1.0
218,192 + -0.8
218,193 - +1.3
218,242 - -0.4
218,379 + ABIE40_RS20565 0.21 +2.3
218,425 + ABIE40_RS20565 0.35 -0.8
218,479 + ABIE40_RS20565 0.51 +0.4
218,479 + ABIE40_RS20565 0.51 -0.3
218,479 + ABIE40_RS20565 0.51 +0.2
218,479 + ABIE40_RS20565 0.51 -0.3
218,480 - ABIE40_RS20565 0.51 +0.4
218,480 - ABIE40_RS20565 0.51 -0.9
218,480 - ABIE40_RS20565 0.51 -0.3
218,480 - ABIE40_RS20565 0.51 +0.0
218,522 + ABIE40_RS20565 0.64 -0.4
218,522 + ABIE40_RS20565 0.64 -2.0
218,522 + ABIE40_RS20565 0.64 +0.4
218,523 - ABIE40_RS20565 0.64 -0.9
218,523 - ABIE40_RS20565 0.64 +0.0
218,523 - ABIE40_RS20565 0.64 -2.0
218,523 - ABIE40_RS20565 0.64 -1.4
218,523 - ABIE40_RS20565 0.64 -1.9
218,527 + ABIE40_RS20565 0.65 -0.1
218,527 + ABIE40_RS20565 0.65 -0.6
218,528 - ABIE40_RS20565 0.66 -0.8
218,528 - ABIE40_RS20565 0.66 -0.8
218,528 - ABIE40_RS20565 0.66 +1.0
218,528 - ABIE40_RS20565 0.66 -1.0
218,582 - ABIE40_RS20565 0.82 -1.4
218,582 - ABIE40_RS20565 0.82 +0.3
218,582 - ABIE40_RS20565 0.82 -0.5
218,582 - ABIE40_RS20565 0.82 -0.8
218,583 + ABIE40_RS20565 0.82 +0.4
218,583 + ABIE40_RS20565 0.82 -2.6
218,584 - ABIE40_RS20565 0.83 +0.0
219,079 + ABIE40_RS20570 0.12 -0.1
219,079 + ABIE40_RS20570 0.12 -2.5
219,082 + ABIE40_RS20570 0.12 -1.1
219,083 - ABIE40_RS20570 0.12 -1.6
219,083 - ABIE40_RS20570 0.12 -0.3
219,088 + ABIE40_RS20570 0.12 -0.5
219,290 + ABIE40_RS20570 0.17 -0.4
219,290 + ABIE40_RS20570 0.17 +0.0
219,291 - ABIE40_RS20570 0.17 -0.3
219,291 - ABIE40_RS20570 0.17 -3.6
219,319 + ABIE40_RS20570 0.18 -1.9
219,320 - ABIE40_RS20570 0.18 +0.8
219,320 - ABIE40_RS20570 0.18 +0.2
219,467 - ABIE40_RS20570 0.22 -0.3
219,467 - ABIE40_RS20570 0.22 -0.4
219,542 + ABIE40_RS20570 0.24 +0.0
219,542 + ABIE40_RS20570 0.24 +1.0
219,542 + ABIE40_RS20570 0.24 +2.0
219,542 + ABIE40_RS20570 0.24 +0.0
219,543 - ABIE40_RS20570 0.24 -0.7
219,543 - ABIE40_RS20570 0.24 -2.0
219,543 - ABIE40_RS20570 0.24 -0.3
219,543 - ABIE40_RS20570 0.24 -1.3
219,544 + ABIE40_RS20570 0.24 +1.1
219,544 + ABIE40_RS20570 0.24 +0.1
219,544 + ABIE40_RS20570 0.24 +0.0
219,544 + ABIE40_RS20570 0.24 -0.8
219,544 + ABIE40_RS20570 0.24 -0.1
219,545 - ABIE40_RS20570 0.24 -0.4

Or see this region's nucleotide sequence