Experiment: R2A with 3-octanone 15.9309 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03030 and ABIE40_RS03035 are separated by 245 nucleotides ABIE40_RS03035 and ABIE40_RS03040 are separated by 300 nucleotides
ABIE40_RS03030: ABIE40_RS03030 - flagellin, at 597,014 to 597,913
_RS03030
ABIE40_RS03035: ABIE40_RS03035 - flagellin, at 598,159 to 599,064
_RS03035
ABIE40_RS03040: ABIE40_RS03040 - flagellin, at 599,365 to 600,312
_RS03040
Position (kb) 598
599
600 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 597.491 kb on - strand, within ABIE40_RS03030 at 597.491 kb on - strand, within ABIE40_RS03030 at 597.500 kb on + strand, within ABIE40_RS03030 at 597.527 kb on + strand, within ABIE40_RS03030 at 597.527 kb on + strand, within ABIE40_RS03030 at 597.527 kb on + strand, within ABIE40_RS03030 at 597.528 kb on - strand, within ABIE40_RS03030 at 597.528 kb on - strand, within ABIE40_RS03030 at 597.528 kb on - strand, within ABIE40_RS03030 at 597.547 kb on + strand, within ABIE40_RS03030 at 597.547 kb on + strand, within ABIE40_RS03030 at 597.547 kb on + strand, within ABIE40_RS03030 at 597.557 kb on - strand, within ABIE40_RS03030 at 597.914 kb on + strand at 597.914 kb on + strand at 597.914 kb on + strand at 597.914 kb on + strand at 597.914 kb on + strand at 597.914 kb on + strand at 597.914 kb on + strand at 597.914 kb on + strand at 597.915 kb on - strand at 597.915 kb on - strand at 597.915 kb on - strand at 597.915 kb on - strand at 597.915 kb on - strand at 597.930 kb on - strand at 597.942 kb on - strand at 598.056 kb on - strand at 598.142 kb on + strand at 598.143 kb on - strand at 598.212 kb on + strand at 598.212 kb on + strand at 598.219 kb on - strand at 598.219 kb on - strand at 598.221 kb on + strand at 598.222 kb on - strand at 598.224 kb on + strand at 598.224 kb on + strand at 598.225 kb on - strand at 598.261 kb on + strand, within ABIE40_RS03035 at 598.284 kb on + strand, within ABIE40_RS03035 at 598.294 kb on + strand, within ABIE40_RS03035 at 598.294 kb on + strand, within ABIE40_RS03035 at 598.295 kb on - strand, within ABIE40_RS03035 at 598.295 kb on - strand, within ABIE40_RS03035 at 598.379 kb on + strand, within ABIE40_RS03035 at 598.380 kb on - strand, within ABIE40_RS03035 at 598.639 kb on + strand, within ABIE40_RS03035 at 598.639 kb on + strand, within ABIE40_RS03035 at 598.639 kb on + strand, within ABIE40_RS03035 at 598.639 kb on + strand, within ABIE40_RS03035 at 598.639 kb on + strand, within ABIE40_RS03035 at 598.639 kb on + strand, within ABIE40_RS03035 at 598.639 kb on + strand, within ABIE40_RS03035 at 598.639 kb on + strand, within ABIE40_RS03035 at 598.639 kb on + strand, within ABIE40_RS03035 at 598.639 kb on + strand, within ABIE40_RS03035 at 598.640 kb on - strand, within ABIE40_RS03035 at 598.640 kb on - strand, within ABIE40_RS03035 at 598.640 kb on - strand, within ABIE40_RS03035 at 598.640 kb on - strand, within ABIE40_RS03035 at 599.039 kb on - strand at 599.062 kb on + strand at 599.229 kb on + strand at 599.229 kb on + strand at 599.229 kb on + strand at 599.230 kb on - strand at 599.230 kb on - strand at 599.230 kb on - strand at 599.230 kb on - strand at 599.230 kb on - strand at 599.307 kb on + strand at 599.308 kb on - strand at 599.308 kb on - strand at 599.308 kb on - strand at 599.349 kb on + strand at 599.349 kb on + strand at 599.349 kb on + strand at 599.349 kb on + strand at 599.349 kb on + strand at 599.349 kb on + strand at 599.349 kb on + strand at 599.349 kb on + strand at 599.350 kb on - strand at 599.350 kb on - strand at 599.350 kb on - strand at 599.372 kb on - strand at 599.372 kb on - strand at 599.372 kb on - strand at 599.413 kb on - strand at 599.433 kb on + strand at 599.500 kb on + strand, within ABIE40_RS03040 at 599.500 kb on + strand, within ABIE40_RS03040 at 599.501 kb on - strand, within ABIE40_RS03040 at 599.501 kb on - strand, within ABIE40_RS03040 at 599.509 kb on + strand, within ABIE40_RS03040 at 599.509 kb on + strand, within ABIE40_RS03040 at 599.510 kb on - strand, within ABIE40_RS03040 at 599.510 kb on - strand, within ABIE40_RS03040 at 599.589 kb on + strand, within ABIE40_RS03040 at 599.596 kb on + strand, within ABIE40_RS03040 at 599.596 kb on + strand, within ABIE40_RS03040 at 599.596 kb on + strand, within ABIE40_RS03040 at 599.596 kb on + strand, within ABIE40_RS03040 at 599.596 kb on + strand, within ABIE40_RS03040 at 599.597 kb on - strand, within ABIE40_RS03040 at 599.597 kb on - strand, within ABIE40_RS03040 at 599.597 kb on - strand, within ABIE40_RS03040 at 599.597 kb on - strand, within ABIE40_RS03040 at 599.767 kb on + strand, within ABIE40_RS03040 at 599.767 kb on + strand, within ABIE40_RS03040 at 599.816 kb on - strand, within ABIE40_RS03040 at 599.817 kb on + strand, within ABIE40_RS03040 at 599.817 kb on + strand, within ABIE40_RS03040 at 599.818 kb on - strand, within ABIE40_RS03040 at 599.818 kb on - strand, within ABIE40_RS03040 at 599.843 kb on - strand, within ABIE40_RS03040 at 599.959 kb on + strand, within ABIE40_RS03040 at 599.959 kb on + strand, within ABIE40_RS03040 at 599.960 kb on - strand, within ABIE40_RS03040
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 15.9309 mM remove 597,491 - ABIE40_RS03030 0.53 +0.2 597,491 - ABIE40_RS03030 0.53 -0.2 597,500 + ABIE40_RS03030 0.54 +1.1 597,527 + ABIE40_RS03030 0.57 +1.6 597,527 + ABIE40_RS03030 0.57 +0.9 597,527 + ABIE40_RS03030 0.57 +1.0 597,528 - ABIE40_RS03030 0.57 -1.3 597,528 - ABIE40_RS03030 0.57 -3.1 597,528 - ABIE40_RS03030 0.57 -0.7 597,547 + ABIE40_RS03030 0.59 +0.8 597,547 + ABIE40_RS03030 0.59 +0.5 597,547 + ABIE40_RS03030 0.59 +0.2 597,557 - ABIE40_RS03030 0.60 +0.6 597,914 + +1.2 597,914 + -1.6 597,914 + +1.1 597,914 + +1.4 597,914 + +0.3 597,914 + +0.5 597,914 + -0.6 597,914 + +1.3 597,915 - -2.9 597,915 - +0.2 597,915 - -1.4 597,915 - -2.1 597,915 - -1.2 597,930 - +1.6 597,942 - -0.0 598,056 - +0.4 598,142 + -0.6 598,143 - -0.1 598,212 + -2.7 598,212 + -0.3 598,219 - +1.4 598,219 - -0.3 598,221 + +1.4 598,222 - -0.1 598,224 + -1.0 598,224 + -0.2 598,225 - +0.6 598,261 + ABIE40_RS03035 0.11 -0.4 598,284 + ABIE40_RS03035 0.14 +0.0 598,294 + ABIE40_RS03035 0.15 -0.5 598,294 + ABIE40_RS03035 0.15 -1.2 598,295 - ABIE40_RS03035 0.15 +0.8 598,295 - ABIE40_RS03035 0.15 +0.1 598,379 + ABIE40_RS03035 0.24 -0.7 598,380 - ABIE40_RS03035 0.24 +0.2 598,639 + ABIE40_RS03035 0.53 +0.7 598,639 + ABIE40_RS03035 0.53 +0.4 598,639 + ABIE40_RS03035 0.53 -0.2 598,639 + ABIE40_RS03035 0.53 -0.9 598,639 + ABIE40_RS03035 0.53 -0.1 598,639 + ABIE40_RS03035 0.53 +5.3 598,639 + ABIE40_RS03035 0.53 +0.2 598,639 + ABIE40_RS03035 0.53 +0.0 598,639 + ABIE40_RS03035 0.53 -0.3 598,639 + ABIE40_RS03035 0.53 -0.1 598,640 - ABIE40_RS03035 0.53 -0.3 598,640 - ABIE40_RS03035 0.53 -0.5 598,640 - ABIE40_RS03035 0.53 -0.6 598,640 - ABIE40_RS03035 0.53 -1.8 599,039 - -0.3 599,062 + -0.4 599,229 + -1.9 599,229 + +0.0 599,229 + -0.4 599,230 - +0.7 599,230 - +0.6 599,230 - -1.0 599,230 - -0.0 599,230 - -0.2 599,307 + +0.4 599,308 - -0.5 599,308 - +2.8 599,308 - +1.3 599,349 + +0.9 599,349 + +0.4 599,349 + +1.4 599,349 + -0.5 599,349 + +0.2 599,349 + -1.2 599,349 + -0.8 599,349 + +0.5 599,350 - -0.3 599,350 - +0.0 599,350 - +0.6 599,372 - +1.2 599,372 - +1.3 599,372 - +0.2 599,413 - -1.4 599,433 + -2.0 599,500 + ABIE40_RS03040 0.14 -2.2 599,500 + ABIE40_RS03040 0.14 -0.7 599,501 - ABIE40_RS03040 0.14 +0.8 599,501 - ABIE40_RS03040 0.14 -0.1 599,509 + ABIE40_RS03040 0.15 +1.2 599,509 + ABIE40_RS03040 0.15 -0.1 599,510 - ABIE40_RS03040 0.15 -1.0 599,510 - ABIE40_RS03040 0.15 -0.4 599,589 + ABIE40_RS03040 0.24 -0.5 599,596 + ABIE40_RS03040 0.24 -1.9 599,596 + ABIE40_RS03040 0.24 +0.8 599,596 + ABIE40_RS03040 0.24 +1.1 599,596 + ABIE40_RS03040 0.24 -1.9 599,596 + ABIE40_RS03040 0.24 +1.8 599,597 - ABIE40_RS03040 0.24 +1.0 599,597 - ABIE40_RS03040 0.24 -2.1 599,597 - ABIE40_RS03040 0.24 -0.6 599,597 - ABIE40_RS03040 0.24 +0.9 599,767 + ABIE40_RS03040 0.42 -0.8 599,767 + ABIE40_RS03040 0.42 -0.9 599,816 - ABIE40_RS03040 0.48 -0.2 599,817 + ABIE40_RS03040 0.48 -0.5 599,817 + ABIE40_RS03040 0.48 -0.0 599,818 - ABIE40_RS03040 0.48 +0.4 599,818 - ABIE40_RS03040 0.48 +0.0 599,843 - ABIE40_RS03040 0.50 +2.2 599,959 + ABIE40_RS03040 0.63 -0.7 599,959 + ABIE40_RS03040 0.63 -2.4 599,960 - ABIE40_RS03040 0.63 -0.0
Or see this region's nucleotide sequence