Experiment: R2A with 3-octanone 15.9309 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02910 and ABIE40_RS02915 are separated by 585 nucleotides ABIE40_RS02915 and ABIE40_RS02920 are separated by 10 nucleotides ABIE40_RS02920 and ABIE40_RS02925 are separated by 57 nucleotides
ABIE40_RS02910: ABIE40_RS02910 - flagellar basal-body MS-ring/collar protein FliF, at 575,207 to 576,907
_RS02910
ABIE40_RS02915: ABIE40_RS02915 - helix-turn-helix transcriptional regulator, at 577,493 to 578,239
_RS02915
ABIE40_RS02920: ABIE40_RS02920 - helix-turn-helix transcriptional regulator, at 578,250 to 578,990
_RS02920
ABIE40_RS02925: ABIE40_RS02925 - hypothetical protein, at 579,048 to 579,491
_RS02925
Position (kb) 577
578
579 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 577.076 kb on + strand at 577.077 kb on - strand at 577.077 kb on - strand at 577.077 kb on - strand at 577.225 kb on - strand at 577.285 kb on + strand at 577.286 kb on - strand at 577.350 kb on + strand at 577.412 kb on + strand at 577.413 kb on - strand at 577.492 kb on + strand at 577.498 kb on + strand at 577.498 kb on + strand at 577.499 kb on - strand at 577.499 kb on - strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.504 kb on + strand at 577.505 kb on - strand at 577.505 kb on - strand at 577.505 kb on - strand at 577.505 kb on - strand at 577.505 kb on - strand at 577.505 kb on - strand at 577.505 kb on - strand at 577.506 kb on + strand at 577.506 kb on + strand at 577.506 kb on + strand at 577.506 kb on + strand at 577.506 kb on + strand at 577.506 kb on + strand at 577.506 kb on + strand at 577.506 kb on + strand at 577.506 kb on + strand at 577.507 kb on - strand at 577.507 kb on - strand at 577.564 kb on + strand at 577.564 kb on + strand at 577.564 kb on + strand at 577.564 kb on + strand at 577.564 kb on + strand at 577.565 kb on - strand at 577.565 kb on - strand at 577.655 kb on + strand, within ABIE40_RS02915 at 577.887 kb on - strand, within ABIE40_RS02915 at 578.000 kb on + strand, within ABIE40_RS02915 at 578.001 kb on - strand, within ABIE40_RS02915 at 578.156 kb on + strand, within ABIE40_RS02915 at 578.156 kb on + strand, within ABIE40_RS02915 at 578.156 kb on + strand, within ABIE40_RS02915 at 578.156 kb on + strand, within ABIE40_RS02915 at 578.156 kb on + strand, within ABIE40_RS02915 at 578.156 kb on + strand, within ABIE40_RS02915 at 578.156 kb on + strand, within ABIE40_RS02915 at 578.157 kb on - strand, within ABIE40_RS02915 at 578.157 kb on - strand, within ABIE40_RS02915 at 578.157 kb on - strand, within ABIE40_RS02915 at 578.157 kb on - strand, within ABIE40_RS02915 at 578.157 kb on - strand, within ABIE40_RS02915 at 578.157 kb on - strand, within ABIE40_RS02915 at 578.157 kb on - strand, within ABIE40_RS02915 at 578.157 kb on - strand, within ABIE40_RS02915 at 578.157 kb on - strand, within ABIE40_RS02915 at 578.176 kb on + strand at 578.177 kb on - strand at 578.186 kb on - strand at 578.186 kb on - strand at 578.247 kb on + strand at 578.247 kb on + strand at 578.247 kb on + strand at 578.247 kb on + strand at 578.247 kb on + strand at 578.247 kb on + strand at 578.248 kb on - strand at 578.248 kb on - strand at 578.248 kb on - strand at 578.282 kb on + strand at 578.282 kb on + strand at 578.282 kb on + strand at 578.283 kb on - strand at 578.283 kb on - strand at 578.290 kb on + strand at 578.290 kb on + strand at 578.290 kb on + strand at 578.290 kb on + strand at 578.290 kb on + strand at 578.290 kb on + strand at 578.290 kb on + strand at 578.290 kb on + strand at 578.291 kb on - strand at 578.291 kb on - strand at 578.291 kb on - strand at 578.490 kb on + strand, within ABIE40_RS02920 at 578.491 kb on - strand, within ABIE40_RS02920 at 578.491 kb on - strand, within ABIE40_RS02920 at 578.513 kb on + strand, within ABIE40_RS02920 at 578.513 kb on + strand, within ABIE40_RS02920 at 578.513 kb on + strand, within ABIE40_RS02920 at 578.514 kb on - strand, within ABIE40_RS02920 at 578.673 kb on + strand, within ABIE40_RS02920 at 578.673 kb on + strand, within ABIE40_RS02920 at 578.674 kb on - strand, within ABIE40_RS02920 at 578.674 kb on - strand, within ABIE40_RS02920 at 578.674 kb on - strand, within ABIE40_RS02920 at 578.674 kb on - strand, within ABIE40_RS02920 at 578.674 kb on - strand, within ABIE40_RS02920 at 578.694 kb on + strand, within ABIE40_RS02920 at 578.694 kb on + strand, within ABIE40_RS02920 at 578.695 kb on - strand, within ABIE40_RS02920 at 578.695 kb on - strand, within ABIE40_RS02920 at 578.714 kb on + strand, within ABIE40_RS02920 at 578.715 kb on - strand, within ABIE40_RS02920 at 578.748 kb on - strand, within ABIE40_RS02920 at 578.748 kb on - strand, within ABIE40_RS02920 at 578.904 kb on + strand, within ABIE40_RS02920 at 578.904 kb on + strand, within ABIE40_RS02920 at 578.904 kb on + strand, within ABIE40_RS02920 at 578.904 kb on + strand, within ABIE40_RS02920 at 578.905 kb on - strand, within ABIE40_RS02920 at 578.905 kb on - strand, within ABIE40_RS02920 at 578.979 kb on + strand at 578.979 kb on + strand at 579.085 kb on + strand at 579.085 kb on + strand at 579.086 kb on - strand at 579.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 15.9309 mM remove 577,076 + -1.5 577,077 - +0.1 577,077 - +0.7 577,077 - +0.8 577,225 - -1.4 577,285 + +1.2 577,286 - -1.2 577,350 + -0.1 577,412 + -0.2 577,413 - -3.1 577,492 + -0.6 577,498 + -0.5 577,498 + -2.7 577,499 - -2.6 577,499 - -1.0 577,504 + -0.6 577,504 + +1.8 577,504 + -3.3 577,504 + -1.9 577,504 + -1.4 577,504 + -2.5 577,504 + -2.1 577,504 + +2.8 577,504 + -2.5 577,504 + -1.8 577,504 + -1.1 577,504 + -1.3 577,504 + -0.7 577,505 - +0.2 577,505 - -1.2 577,505 - -2.3 577,505 - -2.5 577,505 - -3.1 577,505 - -1.9 577,505 - -1.0 577,506 + -0.2 577,506 + -1.4 577,506 + -2.5 577,506 + -0.5 577,506 + -0.7 577,506 + -1.2 577,506 + +1.8 577,506 + -2.1 577,506 + -1.2 577,507 - -0.5 577,507 - -1.9 577,564 + -1.5 577,564 + +0.6 577,564 + -1.8 577,564 + -3.8 577,564 + -3.1 577,565 - -2.7 577,565 - -1.9 577,655 + ABIE40_RS02915 0.22 -4.7 577,887 - ABIE40_RS02915 0.53 +1.8 578,000 + ABIE40_RS02915 0.68 -2.0 578,001 - ABIE40_RS02915 0.68 -0.2 578,156 + ABIE40_RS02915 0.89 -1.9 578,156 + ABIE40_RS02915 0.89 -3.4 578,156 + ABIE40_RS02915 0.89 -2.5 578,156 + ABIE40_RS02915 0.89 -2.9 578,156 + ABIE40_RS02915 0.89 -1.0 578,156 + ABIE40_RS02915 0.89 -1.7 578,156 + ABIE40_RS02915 0.89 -0.5 578,157 - ABIE40_RS02915 0.89 -0.5 578,157 - ABIE40_RS02915 0.89 +0.6 578,157 - ABIE40_RS02915 0.89 -0.5 578,157 - ABIE40_RS02915 0.89 -4.4 578,157 - ABIE40_RS02915 0.89 +1.5 578,157 - ABIE40_RS02915 0.89 -1.2 578,157 - ABIE40_RS02915 0.89 -0.5 578,157 - ABIE40_RS02915 0.89 -0.2 578,157 - ABIE40_RS02915 0.89 -2.3 578,176 + -1.4 578,177 - -1.2 578,186 - -3.9 578,186 - -2.3 578,247 + -1.9 578,247 + +0.2 578,247 + -2.3 578,247 + +0.8 578,247 + +0.2 578,247 + -1.5 578,248 - -2.8 578,248 - -1.2 578,248 - -2.0 578,282 + -1.8 578,282 + -3.7 578,282 + -2.6 578,283 - -4.5 578,283 - -1.4 578,290 + -1.1 578,290 + -1.1 578,290 + -3.9 578,290 + -4.7 578,290 + -1.6 578,290 + -2.6 578,290 + -3.1 578,290 + -0.7 578,291 - -2.2 578,291 - -0.2 578,291 - +0.8 578,490 + ABIE40_RS02920 0.32 -1.4 578,491 - ABIE40_RS02920 0.33 -1.5 578,491 - ABIE40_RS02920 0.33 +0.2 578,513 + ABIE40_RS02920 0.35 -3.1 578,513 + ABIE40_RS02920 0.35 -1.3 578,513 + ABIE40_RS02920 0.35 -1.5 578,514 - ABIE40_RS02920 0.36 -4.0 578,673 + ABIE40_RS02920 0.57 +0.7 578,673 + ABIE40_RS02920 0.57 -1.1 578,674 - ABIE40_RS02920 0.57 -1.7 578,674 - ABIE40_RS02920 0.57 -2.3 578,674 - ABIE40_RS02920 0.57 -1.8 578,674 - ABIE40_RS02920 0.57 -4.0 578,674 - ABIE40_RS02920 0.57 -1.1 578,694 + ABIE40_RS02920 0.60 -3.4 578,694 + ABIE40_RS02920 0.60 -2.7 578,695 - ABIE40_RS02920 0.60 -3.3 578,695 - ABIE40_RS02920 0.60 -3.0 578,714 + ABIE40_RS02920 0.63 -0.7 578,715 - ABIE40_RS02920 0.63 -3.8 578,748 - ABIE40_RS02920 0.67 -1.5 578,748 - ABIE40_RS02920 0.67 -2.8 578,904 + ABIE40_RS02920 0.88 -2.3 578,904 + ABIE40_RS02920 0.88 -1.2 578,904 + ABIE40_RS02920 0.88 -3.4 578,904 + ABIE40_RS02920 0.88 -1.7 578,905 - ABIE40_RS02920 0.88 -1.4 578,905 - ABIE40_RS02920 0.88 -2.5 578,979 + -1.1 578,979 + -1.2 579,085 + -2.8 579,085 + -1.8 579,086 - -0.6 579,086 - +1.4
Or see this region's nucleotide sequence