Experiment: R2A with 3-octanone 15.9309 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02890 and ABIE40_RS02895 overlap by 1 nucleotides ABIE40_RS02895 and ABIE40_RS02900 overlap by 4 nucleotides ABIE40_RS02900 and ABIE40_RS02905 are separated by 16 nucleotides ABIE40_RS02905 and ABIE40_RS02910 are separated by 109 nucleotides
ABIE40_RS02890: ABIE40_RS02890 - protein-glutamate O-methylesterase CheB, at 572,705 to 573,751
_RS02890
ABIE40_RS02895: ABIE40_RS02895 - response regulator, at 573,751 to 574,140
_RS02895
ABIE40_RS02900: ABIE40_RS02900 - chemoreceptor glutamine deamidase CheD, at 574,137 to 574,691
_RS02900
ABIE40_RS02905: ABIE40_RS02905 - hypothetical protein, at 574,708 to 575,097
_RS02905
ABIE40_RS02910: ABIE40_RS02910 - flagellar basal-body MS-ring/collar protein FliF, at 575,207 to 576,907
_RS02910
Position (kb) 574
575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 573.749 kb on + strand at 573.749 kb on + strand at 573.749 kb on + strand at 573.749 kb on + strand at 573.749 kb on + strand at 573.749 kb on + strand at 573.750 kb on - strand at 573.750 kb on - strand at 573.750 kb on - strand at 573.750 kb on - strand at 573.771 kb on + strand at 573.771 kb on + strand at 573.771 kb on + strand at 573.772 kb on - strand at 573.772 kb on - strand at 574.039 kb on - strand, within ABIE40_RS02895 at 574.087 kb on - strand, within ABIE40_RS02895 at 574.087 kb on - strand, within ABIE40_RS02895 at 574.087 kb on - strand, within ABIE40_RS02895 at 574.111 kb on - strand at 574.196 kb on - strand, within ABIE40_RS02900 at 574.673 kb on + strand at 574.674 kb on - strand at 574.674 kb on - strand at 574.705 kb on + strand at 574.706 kb on - strand at 574.716 kb on + strand at 574.716 kb on + strand at 574.801 kb on + strand, within ABIE40_RS02905 at 574.801 kb on + strand, within ABIE40_RS02905 at 575.150 kb on + strand at 575.151 kb on - strand at 575.168 kb on + strand at 575.169 kb on - strand at 575.169 kb on - strand at 575.304 kb on + strand at 575.305 kb on - strand at 575.305 kb on - strand at 575.338 kb on + strand at 575.338 kb on + strand at 575.338 kb on + strand at 575.339 kb on - strand at 575.339 kb on - strand at 575.339 kb on - strand at 575.339 kb on - strand at 575.360 kb on + strand at 575.360 kb on + strand at 575.360 kb on + strand at 575.361 kb on - strand at 575.361 kb on - strand at 575.419 kb on + strand, within ABIE40_RS02910 at 575.419 kb on + strand, within ABIE40_RS02910 at 575.420 kb on - strand, within ABIE40_RS02910 at 575.887 kb on + strand, within ABIE40_RS02910 at 575.888 kb on - strand, within ABIE40_RS02910 at 575.888 kb on - strand, within ABIE40_RS02910 at 575.888 kb on - strand, within ABIE40_RS02910 at 575.968 kb on + strand, within ABIE40_RS02910 at 576.038 kb on + strand, within ABIE40_RS02910 at 576.038 kb on + strand, within ABIE40_RS02910 at 576.038 kb on + strand, within ABIE40_RS02910 at 576.039 kb on - strand, within ABIE40_RS02910 at 576.039 kb on - strand, within ABIE40_RS02910 at 576.039 kb on - strand, within ABIE40_RS02910 at 576.039 kb on - strand, within ABIE40_RS02910 at 576.039 kb on - strand, within ABIE40_RS02910 at 576.039 kb on - strand, within ABIE40_RS02910
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 15.9309 mM remove 573,749 + +0.2 573,749 + -0.3 573,749 + -0.7 573,749 + -1.8 573,749 + +1.8 573,749 + +1.5 573,750 - -0.8 573,750 - -1.0 573,750 - -1.4 573,750 - -0.1 573,771 + -0.7 573,771 + -0.5 573,771 + +0.5 573,772 - +1.8 573,772 - -0.2 574,039 - ABIE40_RS02895 0.74 +0.0 574,087 - ABIE40_RS02895 0.86 -1.5 574,087 - ABIE40_RS02895 0.86 -2.8 574,087 - ABIE40_RS02895 0.86 -0.0 574,111 - +1.3 574,196 - ABIE40_RS02900 0.11 -1.4 574,673 + -1.6 574,674 - -0.1 574,674 - -0.3 574,705 + +0.6 574,706 - -0.0 574,716 + -0.3 574,716 + +0.4 574,801 + ABIE40_RS02905 0.24 -0.7 574,801 + ABIE40_RS02905 0.24 +1.5 575,150 + +1.8 575,151 - -0.6 575,168 + -1.4 575,169 - -0.4 575,169 - -1.5 575,304 + -2.2 575,305 - -2.1 575,305 - -0.5 575,338 + -0.8 575,338 + -1.5 575,338 + -0.4 575,339 - -2.5 575,339 - -0.5 575,339 - -0.7 575,339 - -0.7 575,360 + +0.1 575,360 + +0.6 575,360 + -0.2 575,361 - -0.6 575,361 - -0.3 575,419 + ABIE40_RS02910 0.12 -1.8 575,419 + ABIE40_RS02910 0.12 +0.9 575,420 - ABIE40_RS02910 0.13 -2.6 575,887 + ABIE40_RS02910 0.40 +1.8 575,888 - ABIE40_RS02910 0.40 -0.8 575,888 - ABIE40_RS02910 0.40 -3.2 575,888 - ABIE40_RS02910 0.40 -1.1 575,968 + ABIE40_RS02910 0.45 +0.8 576,038 + ABIE40_RS02910 0.49 -0.2 576,038 + ABIE40_RS02910 0.49 -0.1 576,038 + ABIE40_RS02910 0.49 -1.0 576,039 - ABIE40_RS02910 0.49 -0.8 576,039 - ABIE40_RS02910 0.49 +0.4 576,039 - ABIE40_RS02910 0.49 -0.0 576,039 - ABIE40_RS02910 0.49 -0.8 576,039 - ABIE40_RS02910 0.49 -1.4 576,039 - ABIE40_RS02910 0.49 +0.1
Or see this region's nucleotide sequence