Experiment: R2A with 3-octanone 15.9309 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS24115 and ABIE40_RS24120 are separated by 68 nucleotides ABIE40_RS24120 and ABIE40_RS24125 are separated by 18 nucleotides
ABIE40_RS24115: ABIE40_RS24115 - amidase, at 968,153 to 969,196
_RS24115
ABIE40_RS24120: ABIE40_RS24120 - ABC transporter substrate-binding protein, at 969,265 to 970,779
_RS24120
ABIE40_RS24125: ABIE40_RS24125 - ABC transporter ATP-binding protein, at 970,798 to 972,507
_RS24125
Position (kb) 969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 968.519 kb on + strand, within ABIE40_RS24115 at 968.640 kb on + strand, within ABIE40_RS24115 at 968.640 kb on + strand, within ABIE40_RS24115 at 968.640 kb on + strand, within ABIE40_RS24115 at 968.641 kb on - strand, within ABIE40_RS24115 at 968.641 kb on - strand, within ABIE40_RS24115 at 968.641 kb on - strand, within ABIE40_RS24115 at 968.755 kb on + strand, within ABIE40_RS24115 at 968.802 kb on + strand, within ABIE40_RS24115 at 968.808 kb on + strand, within ABIE40_RS24115 at 968.808 kb on + strand, within ABIE40_RS24115 at 968.865 kb on - strand, within ABIE40_RS24115 at 968.865 kb on - strand, within ABIE40_RS24115 at 969.172 kb on + strand at 969.173 kb on - strand at 969.259 kb on + strand at 969.259 kb on + strand at 969.350 kb on + strand at 969.350 kb on + strand at 969.350 kb on + strand at 969.350 kb on + strand at 969.350 kb on + strand at 969.351 kb on - strand at 969.351 kb on - strand at 969.351 kb on - strand at 969.351 kb on - strand at 969.351 kb on - strand at 969.351 kb on - strand at 969.359 kb on + strand at 969.360 kb on - strand at 969.360 kb on - strand at 969.360 kb on - strand at 969.360 kb on - strand at 969.362 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.413 kb on + strand at 969.414 kb on - strand at 969.414 kb on - strand at 969.414 kb on - strand at 969.414 kb on - strand at 969.414 kb on - strand at 969.414 kb on - strand at 969.414 kb on - strand at 969.414 kb on - strand at 969.485 kb on + strand, within ABIE40_RS24120 at 969.489 kb on - strand, within ABIE40_RS24120 at 969.489 kb on - strand, within ABIE40_RS24120 at 969.489 kb on - strand, within ABIE40_RS24120 at 969.489 kb on - strand, within ABIE40_RS24120 at 969.500 kb on + strand, within ABIE40_RS24120 at 969.500 kb on + strand, within ABIE40_RS24120 at 969.500 kb on + strand, within ABIE40_RS24120 at 969.559 kb on - strand, within ABIE40_RS24120 at 969.559 kb on - strand, within ABIE40_RS24120 at 969.573 kb on - strand, within ABIE40_RS24120 at 969.591 kb on - strand, within ABIE40_RS24120 at 969.591 kb on - strand, within ABIE40_RS24120 at 969.728 kb on + strand, within ABIE40_RS24120 at 969.728 kb on + strand, within ABIE40_RS24120 at 969.729 kb on - strand, within ABIE40_RS24120 at 969.729 kb on - strand, within ABIE40_RS24120 at 969.729 kb on - strand, within ABIE40_RS24120 at 969.791 kb on + strand, within ABIE40_RS24120 at 969.791 kb on + strand, within ABIE40_RS24120 at 969.792 kb on - strand, within ABIE40_RS24120 at 969.792 kb on - strand, within ABIE40_RS24120 at 969.792 kb on - strand, within ABIE40_RS24120 at 969.815 kb on + strand, within ABIE40_RS24120 at 969.815 kb on + strand, within ABIE40_RS24120 at 969.818 kb on + strand, within ABIE40_RS24120 at 969.819 kb on - strand, within ABIE40_RS24120 at 969.819 kb on - strand, within ABIE40_RS24120 at 969.821 kb on + strand, within ABIE40_RS24120 at 969.822 kb on - strand, within ABIE40_RS24120 at 969.822 kb on - strand, within ABIE40_RS24120 at 969.822 kb on - strand, within ABIE40_RS24120 at 969.840 kb on + strand, within ABIE40_RS24120 at 969.842 kb on + strand, within ABIE40_RS24120 at 969.842 kb on + strand, within ABIE40_RS24120 at 969.842 kb on + strand, within ABIE40_RS24120 at 969.842 kb on + strand, within ABIE40_RS24120 at 969.842 kb on + strand, within ABIE40_RS24120 at 969.843 kb on - strand, within ABIE40_RS24120 at 969.843 kb on - strand, within ABIE40_RS24120 at 969.843 kb on - strand, within ABIE40_RS24120 at 969.858 kb on + strand, within ABIE40_RS24120 at 970.186 kb on - strand, within ABIE40_RS24120 at 970.397 kb on + strand, within ABIE40_RS24120 at 970.398 kb on - strand, within ABIE40_RS24120 at 970.398 kb on - strand, within ABIE40_RS24120 at 970.514 kb on + strand, within ABIE40_RS24120 at 970.514 kb on + strand, within ABIE40_RS24120 at 970.514 kb on + strand, within ABIE40_RS24120 at 970.514 kb on + strand, within ABIE40_RS24120 at 970.514 kb on + strand, within ABIE40_RS24120 at 970.514 kb on + strand, within ABIE40_RS24120 at 970.515 kb on - strand, within ABIE40_RS24120 at 970.515 kb on - strand, within ABIE40_RS24120 at 970.515 kb on - strand, within ABIE40_RS24120 at 970.515 kb on - strand, within ABIE40_RS24120 at 970.515 kb on - strand, within ABIE40_RS24120 at 970.515 kb on - strand, within ABIE40_RS24120 at 970.515 kb on - strand, within ABIE40_RS24120 at 970.604 kb on + strand, within ABIE40_RS24120 at 970.604 kb on + strand, within ABIE40_RS24120 at 970.604 kb on + strand, within ABIE40_RS24120 at 970.605 kb on - strand, within ABIE40_RS24120 at 970.605 kb on - strand, within ABIE40_RS24120 at 970.605 kb on - strand, within ABIE40_RS24120 at 970.605 kb on - strand, within ABIE40_RS24120 at 970.713 kb on - strand at 970.799 kb on + strand at 970.799 kb on + strand at 970.799 kb on + strand at 970.800 kb on - strand at 970.800 kb on - strand at 970.800 kb on - strand at 970.800 kb on - strand at 970.800 kb on - strand at 970.804 kb on + strand at 970.804 kb on + strand at 970.804 kb on + strand at 970.805 kb on - strand at 970.805 kb on - strand at 970.805 kb on - strand at 970.805 kb on - strand at 970.805 kb on - strand at 970.918 kb on - strand at 970.918 kb on - strand at 970.919 kb on + strand at 970.919 kb on + strand at 970.919 kb on + strand at 970.919 kb on + strand at 970.919 kb on + strand at 970.920 kb on - strand at 970.920 kb on - strand at 970.982 kb on + strand, within ABIE40_RS24125 at 970.982 kb on + strand, within ABIE40_RS24125 at 970.982 kb on + strand, within ABIE40_RS24125 at 970.982 kb on + strand, within ABIE40_RS24125 at 970.982 kb on + strand, within ABIE40_RS24125 at 970.982 kb on + strand, within ABIE40_RS24125 at 970.982 kb on + strand, within ABIE40_RS24125 at 970.982 kb on + strand, within ABIE40_RS24125 at 970.982 kb on + strand, within ABIE40_RS24125 at 970.983 kb on - strand, within ABIE40_RS24125 at 970.983 kb on - strand, within ABIE40_RS24125 at 970.983 kb on - strand, within ABIE40_RS24125 at 970.983 kb on - strand, within ABIE40_RS24125 at 971.361 kb on + strand, within ABIE40_RS24125 at 971.361 kb on + strand, within ABIE40_RS24125 at 971.361 kb on + strand, within ABIE40_RS24125 at 971.362 kb on - strand, within ABIE40_RS24125 at 971.363 kb on + strand, within ABIE40_RS24125 at 971.363 kb on + strand, within ABIE40_RS24125 at 971.363 kb on + strand, within ABIE40_RS24125 at 971.363 kb on + strand, within ABIE40_RS24125 at 971.364 kb on - strand, within ABIE40_RS24125 at 971.364 kb on - strand, within ABIE40_RS24125 at 971.364 kb on - strand, within ABIE40_RS24125 at 971.364 kb on - strand, within ABIE40_RS24125 at 971.364 kb on - strand, within ABIE40_RS24125 at 971.364 kb on - strand, within ABIE40_RS24125 at 971.753 kb on + strand, within ABIE40_RS24125
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 15.9309 mM remove 968,519 + ABIE40_RS24115 0.35 +0.1 968,640 + ABIE40_RS24115 0.47 -2.1 968,640 + ABIE40_RS24115 0.47 +0.5 968,640 + ABIE40_RS24115 0.47 -2.0 968,641 - ABIE40_RS24115 0.47 +0.3 968,641 - ABIE40_RS24115 0.47 +1.6 968,641 - ABIE40_RS24115 0.47 -0.4 968,755 + ABIE40_RS24115 0.58 +0.4 968,802 + ABIE40_RS24115 0.62 +0.4 968,808 + ABIE40_RS24115 0.63 +2.2 968,808 + ABIE40_RS24115 0.63 -0.0 968,865 - ABIE40_RS24115 0.68 -0.0 968,865 - ABIE40_RS24115 0.68 +3.2 969,172 + -0.0 969,173 - -0.6 969,259 + -1.7 969,259 + +0.6 969,350 + +1.2 969,350 + -1.1 969,350 + -0.1 969,350 + -0.4 969,350 + -1.0 969,351 - +1.2 969,351 - -1.9 969,351 - +0.5 969,351 - +0.5 969,351 - -0.6 969,351 - -1.7 969,359 + +1.0 969,360 - -1.0 969,360 - +0.2 969,360 - +0.0 969,360 - +0.2 969,362 + -0.8 969,413 + -0.1 969,413 + +0.4 969,413 + -1.7 969,413 + -0.4 969,413 + -2.3 969,413 + -2.1 969,413 + -1.4 969,413 + -0.3 969,413 + +0.8 969,413 + -2.4 969,413 + +1.9 969,413 + -2.1 969,413 + -0.6 969,414 - -0.9 969,414 - +0.7 969,414 - +1.0 969,414 - -1.9 969,414 - +0.6 969,414 - -0.6 969,414 - +0.2 969,414 - -1.3 969,485 + ABIE40_RS24120 0.15 +0.3 969,489 - ABIE40_RS24120 0.15 -0.0 969,489 - ABIE40_RS24120 0.15 +0.9 969,489 - ABIE40_RS24120 0.15 +0.2 969,489 - ABIE40_RS24120 0.15 +0.3 969,500 + ABIE40_RS24120 0.16 +0.3 969,500 + ABIE40_RS24120 0.16 +0.1 969,500 + ABIE40_RS24120 0.16 +0.9 969,559 - ABIE40_RS24120 0.19 +0.6 969,559 - ABIE40_RS24120 0.19 +5.2 969,573 - ABIE40_RS24120 0.20 -1.2 969,591 - ABIE40_RS24120 0.22 -1.8 969,591 - ABIE40_RS24120 0.22 -2.5 969,728 + ABIE40_RS24120 0.31 -0.1 969,728 + ABIE40_RS24120 0.31 +0.3 969,729 - ABIE40_RS24120 0.31 -2.0 969,729 - ABIE40_RS24120 0.31 +0.6 969,729 - ABIE40_RS24120 0.31 +0.6 969,791 + ABIE40_RS24120 0.35 -2.0 969,791 + ABIE40_RS24120 0.35 +1.0 969,792 - ABIE40_RS24120 0.35 +0.4 969,792 - ABIE40_RS24120 0.35 -1.9 969,792 - ABIE40_RS24120 0.35 -0.4 969,815 + ABIE40_RS24120 0.36 -1.9 969,815 + ABIE40_RS24120 0.36 +1.4 969,818 + ABIE40_RS24120 0.37 +0.5 969,819 - ABIE40_RS24120 0.37 -2.7 969,819 - ABIE40_RS24120 0.37 +3.5 969,821 + ABIE40_RS24120 0.37 -0.3 969,822 - ABIE40_RS24120 0.37 -0.2 969,822 - ABIE40_RS24120 0.37 +0.0 969,822 - ABIE40_RS24120 0.37 -1.5 969,840 + ABIE40_RS24120 0.38 +0.3 969,842 + ABIE40_RS24120 0.38 +0.1 969,842 + ABIE40_RS24120 0.38 -0.2 969,842 + ABIE40_RS24120 0.38 +0.5 969,842 + ABIE40_RS24120 0.38 -2.1 969,842 + ABIE40_RS24120 0.38 +0.3 969,843 - ABIE40_RS24120 0.38 +0.6 969,843 - ABIE40_RS24120 0.38 -0.8 969,843 - ABIE40_RS24120 0.38 -0.7 969,858 + ABIE40_RS24120 0.39 +0.9 970,186 - ABIE40_RS24120 0.61 +0.1 970,397 + ABIE40_RS24120 0.75 +2.9 970,398 - ABIE40_RS24120 0.75 -0.1 970,398 - ABIE40_RS24120 0.75 +1.8 970,514 + ABIE40_RS24120 0.82 +2.2 970,514 + ABIE40_RS24120 0.82 -1.9 970,514 + ABIE40_RS24120 0.82 -0.4 970,514 + ABIE40_RS24120 0.82 +1.7 970,514 + ABIE40_RS24120 0.82 +1.3 970,514 + ABIE40_RS24120 0.82 +2.2 970,515 - ABIE40_RS24120 0.83 +0.6 970,515 - ABIE40_RS24120 0.83 -2.6 970,515 - ABIE40_RS24120 0.83 -0.6 970,515 - ABIE40_RS24120 0.83 -1.8 970,515 - ABIE40_RS24120 0.83 +0.6 970,515 - ABIE40_RS24120 0.83 +1.0 970,515 - ABIE40_RS24120 0.83 -0.8 970,604 + ABIE40_RS24120 0.88 -0.4 970,604 + ABIE40_RS24120 0.88 -0.2 970,604 + ABIE40_RS24120 0.88 -0.1 970,605 - ABIE40_RS24120 0.88 -2.1 970,605 - ABIE40_RS24120 0.88 +0.2 970,605 - ABIE40_RS24120 0.88 -0.8 970,605 - ABIE40_RS24120 0.88 -0.6 970,713 - -3.2 970,799 + +1.2 970,799 + +0.0 970,799 + -1.1 970,800 - +1.0 970,800 - +0.5 970,800 - +0.0 970,800 - +0.9 970,800 - -1.0 970,804 + +0.4 970,804 + -0.6 970,804 + -0.3 970,805 - +0.1 970,805 - -0.4 970,805 - -1.1 970,805 - +0.1 970,805 - -0.4 970,918 - -2.1 970,918 - -2.9 970,919 + +1.8 970,919 + +0.1 970,919 + -0.4 970,919 + -1.5 970,919 + -0.3 970,920 - -0.6 970,920 - -1.7 970,982 + ABIE40_RS24125 0.11 -0.8 970,982 + ABIE40_RS24125 0.11 -2.1 970,982 + ABIE40_RS24125 0.11 +1.7 970,982 + ABIE40_RS24125 0.11 -1.3 970,982 + ABIE40_RS24125 0.11 +0.5 970,982 + ABIE40_RS24125 0.11 -1.4 970,982 + ABIE40_RS24125 0.11 +0.3 970,982 + ABIE40_RS24125 0.11 -1.0 970,982 + ABIE40_RS24125 0.11 -0.1 970,983 - ABIE40_RS24125 0.11 -0.7 970,983 - ABIE40_RS24125 0.11 +1.4 970,983 - ABIE40_RS24125 0.11 +0.9 970,983 - ABIE40_RS24125 0.11 -1.6 971,361 + ABIE40_RS24125 0.33 +0.3 971,361 + ABIE40_RS24125 0.33 -1.1 971,361 + ABIE40_RS24125 0.33 +0.7 971,362 - ABIE40_RS24125 0.33 +0.6 971,363 + ABIE40_RS24125 0.33 -0.1 971,363 + ABIE40_RS24125 0.33 +0.7 971,363 + ABIE40_RS24125 0.33 +0.7 971,363 + ABIE40_RS24125 0.33 +0.1 971,364 - ABIE40_RS24125 0.33 -1.9 971,364 - ABIE40_RS24125 0.33 -0.2 971,364 - ABIE40_RS24125 0.33 +1.4 971,364 - ABIE40_RS24125 0.33 -0.6 971,364 - ABIE40_RS24125 0.33 +1.0 971,364 - ABIE40_RS24125 0.33 +0.0 971,753 + ABIE40_RS24125 0.56 +0.9
Or see this region's nucleotide sequence