Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS15560

Experiment: R2A with 3-octanone 15.9309 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS15550 and ABIE40_RS15555 are separated by 87 nucleotidesABIE40_RS15555 and ABIE40_RS15560 are separated by 70 nucleotidesABIE40_RS15560 and ABIE40_RS15565 are separated by 85 nucleotides ABIE40_RS15550: ABIE40_RS15550 - heavy metal translocating P-type ATPase, at 3,082,240 to 3,084,453 _RS15550 ABIE40_RS15555: ABIE40_RS15555 - YidB family protein, at 3,084,541 to 3,085,125 _RS15555 ABIE40_RS15560: ABIE40_RS15560 - phosphoglycerate dehydrogenase, at 3,085,196 to 3,086,791 _RS15560 ABIE40_RS15565: ABIE40_RS15565 - phosphoserine transaminase, at 3,086,877 to 3,088,058 _RS15565 Position (kb) 3085 3086 3087Strain fitness (log2 ratio) -2 -1 0 1at 3084.327 kb on - strandat 3084.327 kb on - strandat 3084.413 kb on + strandat 3084.558 kb on + strandat 3084.559 kb on - strandat 3084.559 kb on - strandat 3085.291 kb on - strandat 3085.394 kb on - strand, within ABIE40_RS15560at 3085.394 kb on - strand, within ABIE40_RS15560at 3085.394 kb on - strand, within ABIE40_RS15560at 3085.419 kb on + strand, within ABIE40_RS15560at 3085.420 kb on - strand, within ABIE40_RS15560at 3085.420 kb on - strand, within ABIE40_RS15560at 3085.420 kb on - strand, within ABIE40_RS15560at 3086.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 15.9309 mM
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3,084,327 - -2.4
3,084,327 - -1.2
3,084,413 + -0.1
3,084,558 + -2.7
3,084,559 - -0.7
3,084,559 - +0.6
3,085,291 - +0.1
3,085,394 - ABIE40_RS15560 0.12 -0.2
3,085,394 - ABIE40_RS15560 0.12 -1.3
3,085,394 - ABIE40_RS15560 0.12 +0.1
3,085,419 + ABIE40_RS15560 0.14 +0.3
3,085,420 - ABIE40_RS15560 0.14 -0.1
3,085,420 - ABIE40_RS15560 0.14 -0.3
3,085,420 - ABIE40_RS15560 0.14 -1.6
3,086,901 - +0.7

Or see this region's nucleotide sequence