Experiment: R2A with 3-octanone 15.9309 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS10100 and ABIE40_RS10105 are separated by 87 nucleotides ABIE40_RS10105 and ABIE40_RS10110 are separated by 29 nucleotides ABIE40_RS10110 and ABIE40_RS10115 are separated by 65 nucleotides
ABIE40_RS10100: ABIE40_RS10100 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,945,661 to 1,946,737
_RS10100
ABIE40_RS10105: ABIE40_RS10105 - ribulose-phosphate 3-epimerase, at 1,946,825 to 1,947,502
_RS10105
ABIE40_RS10110: ABIE40_RS10110 - hypothetical protein, at 1,947,532 to 1,948,017
_RS10110
ABIE40_RS10115: ABIE40_RS10115 - adenylosuccinate lyase, at 1,948,083 to 1,949,384
_RS10115
Position (kb) 1946
1947
1948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1945.831 kb on + strand, within ABIE40_RS10100 at 1945.831 kb on + strand, within ABIE40_RS10100 at 1945.832 kb on - strand, within ABIE40_RS10100 at 1946.231 kb on + strand, within ABIE40_RS10100 at 1946.231 kb on + strand, within ABIE40_RS10100 at 1946.231 kb on + strand, within ABIE40_RS10100 at 1946.371 kb on + strand, within ABIE40_RS10100 at 1946.372 kb on - strand, within ABIE40_RS10100 at 1946.453 kb on + strand, within ABIE40_RS10100 at 1946.453 kb on + strand, within ABIE40_RS10100 at 1946.453 kb on + strand, within ABIE40_RS10100 at 1946.453 kb on + strand, within ABIE40_RS10100 at 1946.454 kb on - strand, within ABIE40_RS10100 at 1946.454 kb on - strand, within ABIE40_RS10100 at 1946.522 kb on + strand, within ABIE40_RS10100 at 1946.522 kb on + strand, within ABIE40_RS10100 at 1946.522 kb on + strand, within ABIE40_RS10100 at 1946.522 kb on + strand, within ABIE40_RS10100 at 1946.679 kb on - strand at 1946.787 kb on - strand at 1946.806 kb on + strand at 1946.807 kb on - strand at 1947.631 kb on + strand, within ABIE40_RS10110 at 1947.631 kb on + strand, within ABIE40_RS10110 at 1947.631 kb on + strand, within ABIE40_RS10110 at 1947.632 kb on - strand, within ABIE40_RS10110 at 1947.632 kb on - strand, within ABIE40_RS10110 at 1947.682 kb on + strand, within ABIE40_RS10110 at 1947.682 kb on + strand, within ABIE40_RS10110 at 1947.682 kb on + strand, within ABIE40_RS10110 at 1947.682 kb on + strand, within ABIE40_RS10110 at 1947.683 kb on - strand, within ABIE40_RS10110 at 1947.835 kb on + strand, within ABIE40_RS10110 at 1947.836 kb on - strand, within ABIE40_RS10110 at 1947.840 kb on + strand, within ABIE40_RS10110 at 1947.840 kb on + strand, within ABIE40_RS10110 at 1947.840 kb on + strand, within ABIE40_RS10110 at 1947.840 kb on + strand, within ABIE40_RS10110 at 1947.840 kb on + strand, within ABIE40_RS10110 at 1947.841 kb on - strand, within ABIE40_RS10110 at 1947.847 kb on + strand, within ABIE40_RS10110 at 1947.922 kb on + strand, within ABIE40_RS10110 at 1947.923 kb on - strand, within ABIE40_RS10110 at 1948.037 kb on + strand at 1948.037 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 15.9309 mM remove 1,945,831 + ABIE40_RS10100 0.16 +2.1 1,945,831 + ABIE40_RS10100 0.16 -2.3 1,945,832 - ABIE40_RS10100 0.16 -1.7 1,946,231 + ABIE40_RS10100 0.53 +0.5 1,946,231 + ABIE40_RS10100 0.53 -1.5 1,946,231 + ABIE40_RS10100 0.53 -2.4 1,946,371 + ABIE40_RS10100 0.66 -1.5 1,946,372 - ABIE40_RS10100 0.66 -1.3 1,946,453 + ABIE40_RS10100 0.74 -3.0 1,946,453 + ABIE40_RS10100 0.74 +2.1 1,946,453 + ABIE40_RS10100 0.74 +1.1 1,946,453 + ABIE40_RS10100 0.74 -1.0 1,946,454 - ABIE40_RS10100 0.74 -1.3 1,946,454 - ABIE40_RS10100 0.74 +0.5 1,946,522 + ABIE40_RS10100 0.80 -1.0 1,946,522 + ABIE40_RS10100 0.80 -0.2 1,946,522 + ABIE40_RS10100 0.80 -2.3 1,946,522 + ABIE40_RS10100 0.80 +2.1 1,946,679 - -1.6 1,946,787 - +1.1 1,946,806 + -0.6 1,946,807 - +0.0 1,947,631 + ABIE40_RS10110 0.20 +2.1 1,947,631 + ABIE40_RS10110 0.20 -1.3 1,947,631 + ABIE40_RS10110 0.20 -3.4 1,947,632 - ABIE40_RS10110 0.21 +0.4 1,947,632 - ABIE40_RS10110 0.21 +0.0 1,947,682 + ABIE40_RS10110 0.31 -1.6 1,947,682 + ABIE40_RS10110 0.31 -0.9 1,947,682 + ABIE40_RS10110 0.31 -1.2 1,947,682 + ABIE40_RS10110 0.31 -0.5 1,947,683 - ABIE40_RS10110 0.31 +0.1 1,947,835 + ABIE40_RS10110 0.62 -2.0 1,947,836 - ABIE40_RS10110 0.63 +1.1 1,947,840 + ABIE40_RS10110 0.63 -0.7 1,947,840 + ABIE40_RS10110 0.63 -1.5 1,947,840 + ABIE40_RS10110 0.63 -0.0 1,947,840 + ABIE40_RS10110 0.63 -2.4 1,947,840 + ABIE40_RS10110 0.63 -2.6 1,947,841 - ABIE40_RS10110 0.64 +0.3 1,947,847 + ABIE40_RS10110 0.65 -0.5 1,947,922 + ABIE40_RS10110 0.80 -0.2 1,947,923 - ABIE40_RS10110 0.80 +0.7 1,948,037 + +0.1 1,948,037 + -0.5
Or see this region's nucleotide sequence