Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02270

Experiment: R2A with 3-octanone 15.9309 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02265 and ABIE40_RS02270 are separated by 9 nucleotidesABIE40_RS02270 and ABIE40_RS02275 are separated by 8 nucleotides ABIE40_RS02265: ABIE40_RS02265 - regulator, at 447,908 to 449,116 _RS02265 ABIE40_RS02270: ABIE40_RS02270 - hypothetical protein, at 449,126 to 449,548 _RS02270 ABIE40_RS02275: ABIE40_RS02275 - polyphosphate kinase 2, at 449,557 to 450,438 _RS02275 Position (kb) 449 450Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 448.238 kb on + strand, within ABIE40_RS02265at 448.239 kb on - strand, within ABIE40_RS02265at 448.239 kb on - strand, within ABIE40_RS02265at 448.262 kb on + strand, within ABIE40_RS02265at 448.262 kb on + strand, within ABIE40_RS02265at 448.262 kb on + strand, within ABIE40_RS02265at 448.263 kb on - strand, within ABIE40_RS02265at 448.263 kb on - strand, within ABIE40_RS02265at 448.263 kb on - strand, within ABIE40_RS02265at 448.263 kb on - strand, within ABIE40_RS02265at 448.379 kb on - strand, within ABIE40_RS02265at 448.612 kb on + strand, within ABIE40_RS02265at 448.612 kb on + strand, within ABIE40_RS02265at 448.613 kb on - strand, within ABIE40_RS02265at 448.613 kb on - strand, within ABIE40_RS02265at 448.613 kb on - strand, within ABIE40_RS02265at 448.613 kb on - strand, within ABIE40_RS02265at 448.613 kb on - strand, within ABIE40_RS02265at 448.807 kb on + strand, within ABIE40_RS02265at 448.807 kb on + strand, within ABIE40_RS02265at 448.808 kb on - strand, within ABIE40_RS02265at 448.808 kb on - strand, within ABIE40_RS02265at 448.873 kb on + strand, within ABIE40_RS02265at 449.088 kb on - strandat 449.114 kb on + strandat 449.115 kb on - strandat 449.174 kb on - strand, within ABIE40_RS02270at 449.174 kb on - strand, within ABIE40_RS02270at 449.266 kb on - strand, within ABIE40_RS02270at 449.295 kb on + strand, within ABIE40_RS02270at 449.295 kb on + strand, within ABIE40_RS02270at 449.295 kb on + strand, within ABIE40_RS02270at 449.296 kb on - strand, within ABIE40_RS02270at 449.296 kb on - strand, within ABIE40_RS02270at 449.348 kb on + strand, within ABIE40_RS02270at 449.349 kb on - strand, within ABIE40_RS02270at 449.349 kb on - strand, within ABIE40_RS02270at 449.349 kb on - strand, within ABIE40_RS02270at 449.406 kb on + strand, within ABIE40_RS02270at 449.457 kb on + strand, within ABIE40_RS02270at 449.457 kb on + strand, within ABIE40_RS02270at 449.457 kb on + strand, within ABIE40_RS02270at 449.458 kb on - strand, within ABIE40_RS02270at 449.458 kb on - strand, within ABIE40_RS02270at 449.519 kb on + strandat 449.520 kb on - strandat 449.532 kb on - strandat 449.558 kb on + strandat 449.558 kb on + strandat 449.559 kb on - strandat 449.559 kb on - strandat 449.633 kb on + strandat 449.633 kb on + strandat 449.762 kb on + strand, within ABIE40_RS02275at 449.763 kb on - strand, within ABIE40_RS02275at 449.763 kb on - strand, within ABIE40_RS02275at 449.803 kb on + strand, within ABIE40_RS02275at 449.803 kb on + strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.879 kb on + strand, within ABIE40_RS02275at 449.880 kb on - strand, within ABIE40_RS02275at 449.880 kb on - strand, within ABIE40_RS02275at 449.880 kb on - strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.954 kb on + strand, within ABIE40_RS02275at 449.955 kb on - strand, within ABIE40_RS02275at 450.003 kb on + strand, within ABIE40_RS02275at 450.006 kb on - strand, within ABIE40_RS02275at 450.006 kb on - strand, within ABIE40_RS02275at 450.057 kb on + strand, within ABIE40_RS02275at 450.058 kb on - strand, within ABIE40_RS02275at 450.058 kb on - strand, within ABIE40_RS02275at 450.058 kb on - strand, within ABIE40_RS02275at 450.059 kb on + strand, within ABIE40_RS02275at 450.059 kb on + strand, within ABIE40_RS02275at 450.060 kb on - strand, within ABIE40_RS02275at 450.060 kb on - strand, within ABIE40_RS02275at 450.060 kb on - strand, within ABIE40_RS02275at 450.071 kb on + strand, within ABIE40_RS02275at 450.071 kb on + strand, within ABIE40_RS02275at 450.071 kb on + strand, within ABIE40_RS02275at 450.071 kb on + strand, within ABIE40_RS02275at 450.072 kb on - strand, within ABIE40_RS02275at 450.281 kb on + strand, within ABIE40_RS02275at 450.281 kb on + strand, within ABIE40_RS02275at 450.281 kb on + strand, within ABIE40_RS02275at 450.281 kb on + strand, within ABIE40_RS02275at 450.282 kb on - strand, within ABIE40_RS02275at 450.308 kb on + strand, within ABIE40_RS02275at 450.400 kb on - strandat 450.478 kb on + strandat 450.520 kb on + strandat 450.520 kb on + strandat 450.520 kb on + strandat 450.520 kb on + strandat 450.521 kb on - strandat 450.521 kb on - strandat 450.521 kb on - strandat 450.521 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 15.9309 mM
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448,238 + ABIE40_RS02265 0.27 -0.1
448,239 - ABIE40_RS02265 0.27 +1.6
448,239 - ABIE40_RS02265 0.27 -3.6
448,262 + ABIE40_RS02265 0.29 -2.6
448,262 + ABIE40_RS02265 0.29 -0.4
448,262 + ABIE40_RS02265 0.29 -1.9
448,263 - ABIE40_RS02265 0.29 -0.8
448,263 - ABIE40_RS02265 0.29 -1.0
448,263 - ABIE40_RS02265 0.29 -2.8
448,263 - ABIE40_RS02265 0.29 +1.3
448,379 - ABIE40_RS02265 0.39 -0.9
448,612 + ABIE40_RS02265 0.58 -2.0
448,612 + ABIE40_RS02265 0.58 -0.5
448,613 - ABIE40_RS02265 0.58 -3.0
448,613 - ABIE40_RS02265 0.58 -0.2
448,613 - ABIE40_RS02265 0.58 -1.0
448,613 - ABIE40_RS02265 0.58 -1.0
448,613 - ABIE40_RS02265 0.58 -3.1
448,807 + ABIE40_RS02265 0.74 +0.5
448,807 + ABIE40_RS02265 0.74 -1.4
448,808 - ABIE40_RS02265 0.74 -2.7
448,808 - ABIE40_RS02265 0.74 -2.5
448,873 + ABIE40_RS02265 0.80 +1.8
449,088 - -1.2
449,114 + -0.2
449,115 - -0.4
449,174 - ABIE40_RS02270 0.11 -1.9
449,174 - ABIE40_RS02270 0.11 -1.0
449,266 - ABIE40_RS02270 0.33 -0.2
449,295 + ABIE40_RS02270 0.40 +0.6
449,295 + ABIE40_RS02270 0.40 +1.8
449,295 + ABIE40_RS02270 0.40 -1.2
449,296 - ABIE40_RS02270 0.40 -1.5
449,296 - ABIE40_RS02270 0.40 -0.8
449,348 + ABIE40_RS02270 0.52 -1.7
449,349 - ABIE40_RS02270 0.53 -0.7
449,349 - ABIE40_RS02270 0.53 +1.3
449,349 - ABIE40_RS02270 0.53 +1.8
449,406 + ABIE40_RS02270 0.66 -1.9
449,457 + ABIE40_RS02270 0.78 -2.6
449,457 + ABIE40_RS02270 0.78 -1.2
449,457 + ABIE40_RS02270 0.78 -0.4
449,458 - ABIE40_RS02270 0.78 +1.5
449,458 - ABIE40_RS02270 0.78 +1.7
449,519 + -1.7
449,520 - -0.8
449,532 - -0.0
449,558 + -0.1
449,558 + -3.5
449,559 - +0.1
449,559 - -0.9
449,633 + +0.6
449,633 + +0.5
449,762 + ABIE40_RS02275 0.23 +0.1
449,763 - ABIE40_RS02275 0.23 -0.9
449,763 - ABIE40_RS02275 0.23 -1.2
449,803 + ABIE40_RS02275 0.28 -1.2
449,803 + ABIE40_RS02275 0.28 +0.8
449,804 - ABIE40_RS02275 0.28 +0.2
449,804 - ABIE40_RS02275 0.28 -0.8
449,804 - ABIE40_RS02275 0.28 -0.9
449,804 - ABIE40_RS02275 0.28 +0.1
449,804 - ABIE40_RS02275 0.28 -0.6
449,804 - ABIE40_RS02275 0.28 -0.1
449,804 - ABIE40_RS02275 0.28 -1.2
449,879 + ABIE40_RS02275 0.37 -0.9
449,880 - ABIE40_RS02275 0.37 -0.1
449,880 - ABIE40_RS02275 0.37 -2.0
449,880 - ABIE40_RS02275 0.37 +1.3
449,894 + ABIE40_RS02275 0.38 -0.4
449,894 + ABIE40_RS02275 0.38 -0.5
449,894 + ABIE40_RS02275 0.38 +0.9
449,894 + ABIE40_RS02275 0.38 -1.4
449,894 + ABIE40_RS02275 0.38 +0.8
449,894 + ABIE40_RS02275 0.38 -0.0
449,895 - ABIE40_RS02275 0.38 +1.1
449,895 - ABIE40_RS02275 0.38 -1.0
449,895 - ABIE40_RS02275 0.38 -1.2
449,895 - ABIE40_RS02275 0.38 -0.6
449,895 - ABIE40_RS02275 0.38 +0.8
449,895 - ABIE40_RS02275 0.38 +0.4
449,954 + ABIE40_RS02275 0.45 -1.9
449,955 - ABIE40_RS02275 0.45 -0.0
450,003 + ABIE40_RS02275 0.51 -0.4
450,006 - ABIE40_RS02275 0.51 +0.0
450,006 - ABIE40_RS02275 0.51 +0.5
450,057 + ABIE40_RS02275 0.57 +1.9
450,058 - ABIE40_RS02275 0.57 +0.4
450,058 - ABIE40_RS02275 0.57 -0.7
450,058 - ABIE40_RS02275 0.57 -1.6
450,059 + ABIE40_RS02275 0.57 -0.5
450,059 + ABIE40_RS02275 0.57 -0.1
450,060 - ABIE40_RS02275 0.57 -1.7
450,060 - ABIE40_RS02275 0.57 -0.9
450,060 - ABIE40_RS02275 0.57 -1.3
450,071 + ABIE40_RS02275 0.58 +0.8
450,071 + ABIE40_RS02275 0.58 -1.4
450,071 + ABIE40_RS02275 0.58 -1.3
450,071 + ABIE40_RS02275 0.58 +0.2
450,072 - ABIE40_RS02275 0.58 -2.0
450,281 + ABIE40_RS02275 0.82 +0.2
450,281 + ABIE40_RS02275 0.82 -0.5
450,281 + ABIE40_RS02275 0.82 -2.7
450,281 + ABIE40_RS02275 0.82 +3.4
450,282 - ABIE40_RS02275 0.82 +1.4
450,308 + ABIE40_RS02275 0.85 +0.0
450,400 - +0.4
450,478 + -0.6
450,520 + -0.3
450,520 + -1.9
450,520 + -1.8
450,520 + +0.7
450,521 - -1.2
450,521 - +0.1
450,521 - -0.6
450,521 - +0.1

Or see this region's nucleotide sequence